© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4597.t1 |
| Gene name | |
| Location | scaffold_09:637941..639770 |
| Strand | - |
| Gene length (bp) | 1829 |
| Transcript length (bp) | 1725 |
| Coding sequence length (bp) | 1725 |
| Protein length (aa) | 575 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.3E-84 | 67 | 525 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 8.3E-13 | 108 | 443 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 137 | 156 | 19 |
| 2 | 166 | 188 | 22 |
| 3 | 201 | 223 | 22 |
| 4 | 238 | 260 | 22 |
| 5 | 325 | 347 | 22 |
| 6 | 362 | 384 | 22 |
| 7 | 389 | 411 | 22 |
| 8 | 426 | 445 | 19 |
| 9 | 458 | 480 | 22 |
| 10 | 490 | 508 | 18 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 34.58 | 20.08 | 49.07 |
| 5d_25C | Five days - 25 degrees Celsius | 18.11 | 9.39 | 26.84 |
| 7d_25C | Seven days - 25 degrees Celsius | 23.96 | 13.28 | 34.64 |
| 10d_25C | Ten days - 25 degrees Celsius | 17.56 | 9.08 | 26.03 |
| 7d_15C | Seven days - 15 degrees Celsius | 13.15 | 6.27 | 20.03 |
| 7d_30C | Seven days - 30 degrees Celsius | 13.47 | 6.43 | 20.51 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.007437 | yes |
| 3d_25C | 7d_25C | 0.134928 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.002297 | yes |
| 5d_25C | 7d_25C | 0.329336 | no |
| 5d_25C | 7d_15C | 0.283806 | no |
| 5d_25C | 7d_30C | 0.335611 | no |
| 5d_25C | 10d_25C | 0.942163 | no |
| 7d_25C | 7d_15C | 0.017485 | yes |
| 7d_25C | 7d_30C | 0.027043 | yes |
| 7d_25C | 10d_25C | 0.269978 | no |
| 7d_15C | 7d_30C | 0.959118 | no |
| 7d_15C | 10d_25C | 0.352546 | no |
| 7d_30C | 10d_25C | 0.408515 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4597.t1 MAEPKVSDAITPVDVFPEYGYSSAAGPGSDSSTTKVIQNAKAATEKERSMTLIQGIRLYPKAVFWSVLISTCIAM EGYDISLVNNFYAFPQFNRKYGEMLADGTYQVSAAWQAGLSNGAYCGEIIGLFINGWASERFGYRYTIMSCLVLV SAWTAIFFTAKNVHALLAAEILCGIPWGVFQTLTITYASEVCPVALRGYLTTYVNFCWGLGQLIGIGVIKGMLNR EDEWAYRIPYGLQWMWPLPLFVGIWLAPESPWWLVRKGRTEDAKRALLRLTTKSQGQDGDFDPDETVAMMVHTTA LEEKITQGASYLDCFRGTDLRRTEIVCMVWAIQNLSGNSFSNYSTYFLKQAGLDSSNSYNFAMGQYGINMVGVFG SWFLMTLGIGRRTLCLYGLCGLCTMLLVMGFLGLVPKEHRDQGSLATGSMMLIWALFYQLTVGTVCFSLVAELST RRLQIKTVVLGRNLYNIVAIVCGVLTPYMLNPGAWNWGNYAGFFWGGICFLCIIYTYFRVPEPRGRTFAELDLLF ERGVSARKFATTQVDVFDETIESQVIDDYRANKNTRTDECELEKNHGSI* |
| Coding | >Pro_DTO377G3_2|g4597.t1 ATGGCCGAACCCAAGGTCTCAGATGCCATCACGCCGGTGGATGTCTTTCCCGAATATGGTTACTCTTCAGCCGCT GGACCGGGCTCGGACTCATCCACGACCAAGGTCATTCAAAATGCAAAGGCAGCCACGGAGAAGGAACGGTCTATG ACATTGATACAGGGTATCCGGTTGTACCCCAAAGCCGTTTTTTGGAGCGTGCTCATCTCTACTTGCATTGCCATG GAGGGTTACGATATTAGTTTGGTCAACAACTTCTACGCCTTCCCGCAATTCAATCGCAAATATGGTGAGATGCTG GCCGATGGCACATATCAAGTATCCGCTGCGTGGCAAGCAGGTCTGAGCAACGGTGCTTACTGCGGCGAGATCATC GGTCTATTCATCAACGGCTGGGCTTCAGAACGATTCGGTTACCGGTACACGATTATGTCCTGCCTTGTACTTGTT AGTGCGTGGACGGCGATCTTCTTCACGGCTAAGAATGTGCATGCCCTGCTTGCAGCGGAGATTCTCTGCGGTATT CCTTGGGGTGTCTTTCAGACTTTGACGATCACCTATGCTTCGGAGGTGTGTCCAGTGGCGCTGCGAGGGTATTTG ACGACCTATGTCAATTTCTGCTGGGGTCTTGGCCAGCTTATCGGTATCGGTGTGATTAAGGGCATGTTGAACCGG GAGGACGAATGGGCATATCGGATTCCGTACGGACTGCAGTGGATGTGGCCACTGCCGCTCTTCGTTGGTATTTGG CTTGCGCCTGAATCCCCATGGTGGTTGGTTCGGAAAGGCCGCACTGAAGATGCGAAACGGGCCCTTCTCCGTTTG ACTACCAAAAGTCAGGGACAGGATGGGGATTTCGATCCAGATGAGACTGTCGCTATGATGGTTCATACGACCGCC CTGGAGGAAAAAATCACCCAGGGTGCGAGCTACTTGGATTGCTTCCGGGGCACTGATCTCCGCCGCACAGAGATT GTCTGTATGGTCTGGGCCATCCAAAATCTCAGTGGAAACTCCTTTTCCAACTACTCGACCTACTTCTTAAAACAG GCAGGGTTAGACTCCTCTAACTCTTACAACTTTGCTATGGGTCAATACGGAATCAATATGGTTGGCGTTTTCGGA TCATGGTTCCTTATGACACTCGGAATCGGCCGGCGGACGTTATGTCTGTACGGTCTCTGTGGTCTGTGCACCATG CTATTGGTCATGGGTTTCCTTGGCCTTGTTCCCAAAGAACACAGAGACCAAGGCTCCCTGGCCACTGGTTCAATG ATGTTGATCTGGGCCCTATTCTACCAGCTGACCGTTGGAACGGTCTGCTTCTCCCTTGTTGCCGAGCTTTCCACC CGCCGACTGCAAATCAAGACAGTCGTGCTGGGCCGCAACCTGTACAACATTGTCGCCATCGTCTGCGGCGTTCTG ACCCCTTACATGCTGAACCCCGGCGCCTGGAACTGGGGCAACTACGCCGGTTTCTTCTGGGGTGGCATCTGCTTC CTGTGCATCATATACACGTACTTCCGCGTTCCCGAGCCTCGTGGCCGCACGTTCGCCGAGCTTGACCTGCTCTTC GAGCGCGGTGTCAGCGCTCGCAAGTTTGCGACCACCCAAGTGGATGTGTTTGATGAGACCATTGAGAGCCAAGTC ATTGATGATTACCGGGCAAATAAAAACACCCGAACCGATGAATGCGAATTGGAGAAAAATCACGGTTCGATATGA |
| Transcript | >Pro_DTO377G3_2|g4597.t1 ATGGCCGAACCCAAGGTCTCAGATGCCATCACGCCGGTGGATGTCTTTCCCGAATATGGTTACTCTTCAGCCGCT GGACCGGGCTCGGACTCATCCACGACCAAGGTCATTCAAAATGCAAAGGCAGCCACGGAGAAGGAACGGTCTATG ACATTGATACAGGGTATCCGGTTGTACCCCAAAGCCGTTTTTTGGAGCGTGCTCATCTCTACTTGCATTGCCATG GAGGGTTACGATATTAGTTTGGTCAACAACTTCTACGCCTTCCCGCAATTCAATCGCAAATATGGTGAGATGCTG GCCGATGGCACATATCAAGTATCCGCTGCGTGGCAAGCAGGTCTGAGCAACGGTGCTTACTGCGGCGAGATCATC GGTCTATTCATCAACGGCTGGGCTTCAGAACGATTCGGTTACCGGTACACGATTATGTCCTGCCTTGTACTTGTT AGTGCGTGGACGGCGATCTTCTTCACGGCTAAGAATGTGCATGCCCTGCTTGCAGCGGAGATTCTCTGCGGTATT CCTTGGGGTGTCTTTCAGACTTTGACGATCACCTATGCTTCGGAGGTGTGTCCAGTGGCGCTGCGAGGGTATTTG ACGACCTATGTCAATTTCTGCTGGGGTCTTGGCCAGCTTATCGGTATCGGTGTGATTAAGGGCATGTTGAACCGG GAGGACGAATGGGCATATCGGATTCCGTACGGACTGCAGTGGATGTGGCCACTGCCGCTCTTCGTTGGTATTTGG CTTGCGCCTGAATCCCCATGGTGGTTGGTTCGGAAAGGCCGCACTGAAGATGCGAAACGGGCCCTTCTCCGTTTG ACTACCAAAAGTCAGGGACAGGATGGGGATTTCGATCCAGATGAGACTGTCGCTATGATGGTTCATACGACCGCC CTGGAGGAAAAAATCACCCAGGGTGCGAGCTACTTGGATTGCTTCCGGGGCACTGATCTCCGCCGCACAGAGATT GTCTGTATGGTCTGGGCCATCCAAAATCTCAGTGGAAACTCCTTTTCCAACTACTCGACCTACTTCTTAAAACAG GCAGGGTTAGACTCCTCTAACTCTTACAACTTTGCTATGGGTCAATACGGAATCAATATGGTTGGCGTTTTCGGA TCATGGTTCCTTATGACACTCGGAATCGGCCGGCGGACGTTATGTCTGTACGGTCTCTGTGGTCTGTGCACCATG CTATTGGTCATGGGTTTCCTTGGCCTTGTTCCCAAAGAACACAGAGACCAAGGCTCCCTGGCCACTGGTTCAATG ATGTTGATCTGGGCCCTATTCTACCAGCTGACCGTTGGAACGGTCTGCTTCTCCCTTGTTGCCGAGCTTTCCACC CGCCGACTGCAAATCAAGACAGTCGTGCTGGGCCGCAACCTGTACAACATTGTCGCCATCGTCTGCGGCGTTCTG ACCCCTTACATGCTGAACCCCGGCGCCTGGAACTGGGGCAACTACGCCGGTTTCTTCTGGGGTGGCATCTGCTTC CTGTGCATCATATACACGTACTTCCGCGTTCCCGAGCCTCGTGGCCGCACGTTCGCCGAGCTTGACCTGCTCTTC GAGCGCGGTGTCAGCGCTCGCAAGTTTGCGACCACCCAAGTGGATGTGTTTGATGAGACCATTGAGAGCCAAGTC ATTGATGATTACCGGGCAAATAAAAACACCCGAACCGATGAATGCGAATTGGAGAAAAATCACGGTTCGATATGA |
| Gene | >Pro_DTO377G3_2|g4597.t1 ATGGCCGAACCCAAGGTCTCAGATGCCATCACGCCGGTGGATGTCTTTCCCGAATATGGTTACTCTTCAGCCGCT GGACCGGGCTCGGACTCATCCACGACCAAGGTCATTCAAAATGCAAAGGCAGCCACGGAGAAGGAACGGTCTATG ACATTGATACAGGGTATCCGGTTGTACCCCAAAGCCGTTTTTTGGAGCGTGCTCATCTCTACTTGCATTGCCATG GAGGGTTACGATATTAGTTTGGTCAACAACTTCTACGCCTTCCCGCAATTCAATCGCAAATATGGTGAGATGCTG GCCGATGGCACATATCAAGTATCCGCTGCGGTAAGTTCAACCAATTCCGGCGGTAGCCATTCCTCTATCTCTTGG AGTGGGGTGGACTTGCCTCTTTGGGAGATGAAGAAACTGACAATTCTCTGGACATAAAGTGGCAAGCAGGTCTGA GCAACGGTGCTTACTGCGGCGAGATCATCGGTCTATTCATCAACGGCTGGGCTTCAGAACGATTCGGTTACCGGT ACACGATTATGTCCTGCCTTGTACTTGTTAGTGCGTGGACGGCGATCTTCTTCACGGCTAAGAATGTGCATGCCC TGCTTGCAGCGGAGATTCTCTGCGGTATTCCTTGGGGTGTCTTTCAGACTTTGACGATCACCTATGCTTCGGAGG TGTGTCCAGTGGCGCTGCGAGGGTATTTGACGACCTATGTCAATTTCTGCTGGGGTCTTGGCCAGCTTATCGGTA TCGGTGTGATTAAGGGCATGTTGAACCGGGAGGACGAATGGGCATATCGGATTCCGTACGGACTGCAGTGGATGT GGCCACTGCCGCTCTTCGTTGGTATTTGGCTTGCGCCTGAATCCCCATGGTGGTTGGTTCGGAAAGGCCGCACTG AAGATGCGAAACGGGCCCTTCTCCGTTTGACTACCAAAAGTCAGGGACAGGATGGGGATTTCGATCCAGATGAGA CTGTCGCTATGATGGTTCATACGACCGCCCTGGAGGAAAAAATCACCCAGGGTGCGAGCTACTTGGATTGCTTCC GGGGCACTGATCTCCGCCGCACAGAGATTGTCTGTATGGTCTGGGCCATCCAAAATCTCAGTGGAAACTCCTTTT CCAACTACTCGACCTACTTCTTAAAACAGGCAGGGTTAGACTCCTCTAACTCTTACAACTTTGCTATGGGTCAAT ACGGAATCAATATGGTTGGCGTTTTCGGATCATGGTTCCTTATGACACTCGGAATCGGCCGGCGGACGTTATGTC TGTACGGTCTCTGTGGTCTGTGCACCATGCTATTGGTCATGGGTTTCCTTGGCCTTGTTCCCAAAGAACACAGAG ACCAAGGCTCCCTGGCCACTGGTTCAATGATGTTGATCTGGGCCCTATTCTACCAGCTGACCGTTGGAACGGTCT GCTTCTCCCTTGTTGCCGAGCTTTCCACCCGCCGACTGCAAATCAAGACAGTCGTGCTGGGCCGCAACCTGTACA ACATTGTCGCCATCGTCTGCGGCGTTCTGACCCCTTACATGCTGAACCCCGGCGCCTGGAACTGGGGCAACTACG CCGGTTTCTTCTGGGGTGGCATCTGCTTCCTGTGCATCATATACACGTACTTCCGCGTTCCCGAGCCTCGTGGCC GCACGTTCGCCGAGCTTGACCTGCTCTTCGAGCGCGGTGTCAGCGCTCGCAAGTTTGCGACCACCCAAGTGGATG TGTTTGATGAGACCATTGAGAGCCAAGTCATTGATGATTACCGGGCAAATAAAAACACCCGAACCGATGAATGCG AATTGGAGAAAAATCACGGTTCGATATGA |