© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4583.t1 |
| Gene name | |
| Location | scaffold_09:611738..613329 |
| Strand | - |
| Gene length (bp) | 1591 |
| Transcript length (bp) | 1536 |
| Coding sequence length (bp) | 1536 |
| Protein length (aa) | 512 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01180 | DHO_dh | Dihydroorotate dehydrogenase | 5.8E-55 | 150 | 434 |
| PF01180 | DHO_dh | Dihydroorotate dehydrogenase | 1.1E-09 | 459 | 508 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005737 | cytoplasm | Yes |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 78 | 95 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 44.54 | 26.29 | 62.79 |
| 5d_25C | Five days - 25 degrees Celsius | 27.29 | 14.70 | 39.87 |
| 7d_25C | Seven days - 25 degrees Celsius | 21.37 | 11.04 | 31.70 |
| 10d_25C | Ten days - 25 degrees Celsius | 19.65 | 9.91 | 29.39 |
| 7d_15C | Seven days - 15 degrees Celsius | 31.21 | 17.46 | 44.97 |
| 7d_30C | Seven days - 30 degrees Celsius | 26.41 | 14.27 | 38.56 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.041016 | yes |
| 3d_25C | 7d_25C | 0.002297 | yes |
| 3d_25C | 7d_15C | 0.129711 | no |
| 3d_25C | 7d_30C | 0.020660 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.423674 | no |
| 5d_25C | 7d_15C | 0.679327 | no |
| 5d_25C | 7d_30C | 0.935911 | no |
| 5d_25C | 10d_25C | 0.237804 | no |
| 7d_25C | 7d_15C | 0.150197 | no |
| 7d_25C | 7d_30C | 0.496487 | no |
| 7d_25C | 10d_25C | 0.829044 | no |
| 7d_15C | 7d_30C | 0.586445 | no |
| 7d_15C | 10d_25C | 0.066479 | no |
| 7d_30C | 10d_25C | 0.301341 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4583.t1 MAWRASVRARALPTSRLIQRPSALLPKRAQRYPGALRYASDSAAPPPTEAAKEMGKEVTQEAAKEIPRKARRGSR KALYGASLALTLLVGYIYGTDTRASIHRYGVVPLIRLLWPDAEDAHHVGVENLKMLYQYGLHPRERGDPDSDGVL ATEVFGYTLSNPIGISAGLDKHAEVPDALFDIGPAIVEVGGTTPLPQEGNPKPRVFRLPSQHAMINRYGLNSKGA DHMAKVLKQRVADFAYAAGFGLHEQSAQRVLDGEANVPPGSLVPGKLLAVQVAKNKVTPDGDIEAIKRDYVYCVD RVAPYADILVVNVSSPNTPGLRDLQAAAPLTAILTAVVASAKNVERKTKPYVMVKVSPDEDSDEQISGICEAVWN SGVDGVIVGNTTNRRPDPVPRGFVLPAEEQKTLKETGGYSGPQLFNRSIALVARYRALLDQGPPSSATNSDKSVG KVSGLPRKVIFASGGITTGEEAREALKAGASVAMMYTGIVYGGVGTVTRVKQELREELQKK* |
| Coding | >Pro_DTO377G3_2|g4583.t1 ATGGCCTGGAGAGCCAGCGTCCGGGCTCGCGCTCTTCCTACCTCCCGCTTGATCCAACGGCCGTCGGCATTGCTA CCGAAACGGGCCCAGCGCTACCCCGGTGCTTTGCGATATGCTTCGGACTCGGCTGCACCTCCACCCACTGAGGCG GCCAAGGAGATGGGAAAGGAAGTTACGCAGGAGGCCGCTAAGGAGATCCCCCGCAAAGCCCGCCGTGGCTCTAGG AAGGCTTTGTACGGTGCCTCATTGGCCTTAACCCTGCTGGTGGGCTACATCTATGGAACGGACACCAGAGCCAGT ATCCACAGATACGGCGTTGTACCCTTGATCCGCCTTTTGTGGCCCGATGCGGAGGATGCGCACCACGTTGGCGTG GAAAACCTGAAGATGCTCTACCAATATGGTCTGCACCCACGCGAGCGTGGCGACCCGGACAGTGATGGTGTCCTG GCAACTGAGGTCTTTGGATACACCCTCTCTAACCCCATCGGTATCTCCGCCGGTCTGGACAAGCACGCCGAGGTC CCTGATGCGCTGTTCGACATCGGTCCTGCCATCGTCGAGGTGGGCGGCACGACCCCTCTACCACAGGAAGGCAAC CCGAAGCCTAGAGTATTCCGACTGCCCTCGCAACACGCGATGATCAACCGCTACGGCCTCAACTCCAAGGGCGCC GACCATATGGCAAAGGTTCTGAAGCAGCGTGTAGCTGACTTCGCCTACGCCGCCGGATTTGGCCTGCACGAACAA TCCGCGCAGCGCGTCTTGGACGGCGAAGCCAACGTTCCGCCCGGAAGTCTCGTCCCAGGCAAACTTCTTGCGGTG CAAGTTGCCAAGAACAAGGTTACCCCCGACGGAGACATCGAAGCCATCAAGCGCGACTACGTTTACTGCGTGGAC CGAGTGGCGCCGTACGCCGACATTCTCGTCGTGAACGTCTCCAGCCCCAACACCCCAGGTCTGCGTGACCTCCAA GCAGCCGCACCCCTCACAGCAATCCTCACGGCGGTCGTCGCCTCCGCCAAGAACGTCGAGCGCAAGACCAAGCCC TACGTAATGGTCAAGGTAAGCCCGGATGAAGACTCCGACGAGCAGATATCCGGCATCTGCGAGGCTGTCTGGAAC TCCGGCGTCGACGGTGTCATCGTCGGCAACACCACCAACCGTCGGCCCGACCCCGTGCCCCGGGGCTTCGTCCTC CCCGCCGAGGAGCAGAAGACTCTGAAGGAAACCGGCGGTTACTCCGGCCCCCAGCTGTTTAACCGCTCCATTGCG CTCGTCGCCCGCTACCGCGCCCTGCTTGACCAGGGACCCCCATCATCTGCGACCAATTCGGATAAGTCTGTCGGG AAGGTGTCTGGCCTTCCTCGGAAGGTTATCTTCGCTTCCGGCGGTATCACTACTGGTGAGGAGGCACGCGAGGCT CTCAAGGCCGGCGCTTCGGTGGCTATGATGTACACTGGTATTGTCTACGGCGGTGTTGGCACTGTCACGCGTGTC AAGCAGGAGCTGCGCGAGGAGCTGCAGAAGAAATAA |
| Transcript | >Pro_DTO377G3_2|g4583.t1 ATGGCCTGGAGAGCCAGCGTCCGGGCTCGCGCTCTTCCTACCTCCCGCTTGATCCAACGGCCGTCGGCATTGCTA CCGAAACGGGCCCAGCGCTACCCCGGTGCTTTGCGATATGCTTCGGACTCGGCTGCACCTCCACCCACTGAGGCG GCCAAGGAGATGGGAAAGGAAGTTACGCAGGAGGCCGCTAAGGAGATCCCCCGCAAAGCCCGCCGTGGCTCTAGG AAGGCTTTGTACGGTGCCTCATTGGCCTTAACCCTGCTGGTGGGCTACATCTATGGAACGGACACCAGAGCCAGT ATCCACAGATACGGCGTTGTACCCTTGATCCGCCTTTTGTGGCCCGATGCGGAGGATGCGCACCACGTTGGCGTG GAAAACCTGAAGATGCTCTACCAATATGGTCTGCACCCACGCGAGCGTGGCGACCCGGACAGTGATGGTGTCCTG GCAACTGAGGTCTTTGGATACACCCTCTCTAACCCCATCGGTATCTCCGCCGGTCTGGACAAGCACGCCGAGGTC CCTGATGCGCTGTTCGACATCGGTCCTGCCATCGTCGAGGTGGGCGGCACGACCCCTCTACCACAGGAAGGCAAC CCGAAGCCTAGAGTATTCCGACTGCCCTCGCAACACGCGATGATCAACCGCTACGGCCTCAACTCCAAGGGCGCC GACCATATGGCAAAGGTTCTGAAGCAGCGTGTAGCTGACTTCGCCTACGCCGCCGGATTTGGCCTGCACGAACAA TCCGCGCAGCGCGTCTTGGACGGCGAAGCCAACGTTCCGCCCGGAAGTCTCGTCCCAGGCAAACTTCTTGCGGTG CAAGTTGCCAAGAACAAGGTTACCCCCGACGGAGACATCGAAGCCATCAAGCGCGACTACGTTTACTGCGTGGAC CGAGTGGCGCCGTACGCCGACATTCTCGTCGTGAACGTCTCCAGCCCCAACACCCCAGGTCTGCGTGACCTCCAA GCAGCCGCACCCCTCACAGCAATCCTCACGGCGGTCGTCGCCTCCGCCAAGAACGTCGAGCGCAAGACCAAGCCC TACGTAATGGTCAAGGTAAGCCCGGATGAAGACTCCGACGAGCAGATATCCGGCATCTGCGAGGCTGTCTGGAAC TCCGGCGTCGACGGTGTCATCGTCGGCAACACCACCAACCGTCGGCCCGACCCCGTGCCCCGGGGCTTCGTCCTC CCCGCCGAGGAGCAGAAGACTCTGAAGGAAACCGGCGGTTACTCCGGCCCCCAGCTGTTTAACCGCTCCATTGCG CTCGTCGCCCGCTACCGCGCCCTGCTTGACCAGGGACCCCCATCATCTGCGACCAATTCGGATAAGTCTGTCGGG AAGGTGTCTGGCCTTCCTCGGAAGGTTATCTTCGCTTCCGGCGGTATCACTACTGGTGAGGAGGCACGCGAGGCT CTCAAGGCCGGCGCTTCGGTGGCTATGATGTACACTGGTATTGTCTACGGCGGTGTTGGCACTGTCACGCGTGTC AAGCAGGAGCTGCGCGAGGAGCTGCAGAAGAAATAA |
| Gene | >Pro_DTO377G3_2|g4583.t1 ATGGCCTGGAGAGCCAGCGTCCGGGCTCGCGCTCTTCCTACCTCCCGCTTGATCCAACGGCCGTCGGCATTGCTA CCGAAACGGGCCCAGCGCTACCCCGGTGCTTTGCGATATGCTTCGGACTCGGCTGCACCTCCACCCACTGAGGCG GCCAAGGAGATGGGAAAGGAAGTTACGCAGGAGGCCGCTAAGGAGATCCCCCGCAAAGCCCGCCGTGGCTCTAGG AAGGCTTTGTACGGTGCCTCATTGGCCTTAACCCTGCTGGTGGGCTACATCTATGGAACGGACACCAGAGCCAGT ATCCACAGATACGGCGTTGTACCCTTGATCCGCCTTTTGTGGCCCGATGCGGAGGATGCGCACCACGTTGGCGTG GAAAACCTGAAGATGCTCTACCAATATGGTCTGCACCCACGCGAGCGTGGCGACCCGGACAGTGATGGTGTCCTG GCAACTGAGGTAATGGTATTCCCAAACCTGCCGATGGTCAATCACTGACGAGGTCTTTTACCAGGTCTTTGGATA CACCCTCTCTAACCCCATCGGTATCTCCGCCGGTCTGGACAAGCACGCCGAGGTCCCTGATGCGCTGTTCGACAT CGGTCCTGCCATCGTCGAGGTGGGCGGCACGACCCCTCTACCACAGGAAGGCAACCCGAAGCCTAGAGTATTCCG ACTGCCCTCGCAACACGCGATGATCAACCGCTACGGCCTCAACTCCAAGGGCGCCGACCATATGGCAAAGGTTCT GAAGCAGCGTGTAGCTGACTTCGCCTACGCCGCCGGATTTGGCCTGCACGAACAATCCGCGCAGCGCGTCTTGGA CGGCGAAGCCAACGTTCCGCCCGGAAGTCTCGTCCCAGGCAAACTTCTTGCGGTGCAAGTTGCCAAGAACAAGGT TACCCCCGACGGAGACATCGAAGCCATCAAGCGCGACTACGTTTACTGCGTGGACCGAGTGGCGCCGTACGCCGA CATTCTCGTCGTGAACGTCTCCAGCCCCAACACCCCAGGTCTGCGTGACCTCCAAGCAGCCGCACCCCTCACAGC AATCCTCACGGCGGTCGTCGCCTCCGCCAAGAACGTCGAGCGCAAGACCAAGCCCTACGTAATGGTCAAGGTAAG CCCGGATGAAGACTCCGACGAGCAGATATCCGGCATCTGCGAGGCTGTCTGGAACTCCGGCGTCGACGGTGTCAT CGTCGGCAACACCACCAACCGTCGGCCCGACCCCGTGCCCCGGGGCTTCGTCCTCCCCGCCGAGGAGCAGAAGAC TCTGAAGGAAACCGGCGGTTACTCCGGCCCCCAGCTGTTTAACCGCTCCATTGCGCTCGTCGCCCGCTACCGCGC CCTGCTTGACCAGGGACCCCCATCATCTGCGACCAATTCGGATAAGTCTGTCGGGAAGGTGTCTGGCCTTCCTCG GAAGGTTATCTTCGCTTCCGGCGGTATCACTACTGGTGAGGAGGCACGCGAGGCTCTCAAGGCCGGCGCTTCGGT GGCTATGATGTACACTGGTATTGTCTACGGCGGTGTTGGCACTGTCACGCGTGTCAAGCAGGAGCTGCGCGAGGA GCTGCAGAAGAAATAA |