© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4569.t1 |
| Gene name | |
| Location | scaffold_09:584461..585619 |
| Strand | + |
| Gene length (bp) | 1158 |
| Transcript length (bp) | 915 |
| Coding sequence length (bp) | 915 |
| Protein length (aa) | 305 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 27 | 49 | 22 |
| 2 | 78 | 95 | 17 |
| 3 | 107 | 129 | 22 |
| 4 | 149 | 171 | 22 |
| 5 | 183 | 205 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.22 | 0.00 | 2.56 |
| 5d_25C | Five days - 25 degrees Celsius | 1.54 | 0.03 | 3.04 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.91 | 0.10 | 3.72 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.60 | 0.00 | 1.43 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.82 | 0.00 | 1.80 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.83 | 0.00 | 1.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.782856 | no |
| 3d_25C | 7d_25C | 0.528476 | no |
| 3d_25C | 7d_15C | 0.620247 | no |
| 3d_25C | 7d_30C | 0.638495 | no |
| 3d_25C | 10d_25C | 0.399726 | no |
| 5d_25C | 7d_25C | 0.771424 | no |
| 5d_25C | 7d_15C | 0.357538 | no |
| 5d_25C | 7d_30C | 0.372447 | no |
| 5d_25C | 10d_25C | 0.225167 | no |
| 7d_25C | 7d_15C | 0.187636 | no |
| 7d_25C | 7d_30C | 0.201629 | no |
| 7d_25C | 10d_25C | 0.132536 | no |
| 7d_15C | 7d_30C | 0.984784 | no |
| 7d_15C | 10d_25C | 0.752877 | no |
| 7d_30C | 10d_25C | 0.739098 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4569.t1 MVLTAAIFVTIRLATRIHLKKFGWDDLFLVIALAASVMTTIAVNLAVVHGYGRRKADMGEGIHIALKWFFVAQIP YKIALGFTKASIVLLYLRVFITESFQRVGKGFLTVIAAWTVASVLVTIFQCIPIEASWNHNIKVKQCVDKDSWWY AFAGINTVTDVLIAILPIPPVRHLKLSKRDRIGLCFVFGVGAFVCVTSIMRTVAVSQTSTGLDQSWDFIPRSVWT LVECNMGIICACLPMMRRPLSFLFPWLFRGSSRNESERLSYVPIELRYTNRQLRPRGSQSQEEILQSDVRDKRAL AAEE* |
| Coding | >Pro_DTO377G3_2|g4569.t1 ATGGTGCTCACTGCGGCCATATTTGTTACCATTCGGCTAGCAACGAGGATTCATCTGAAAAAATTCGGTTGGGAT GATCTGTTCCTCGTCATCGCCCTAGCGGCATCGGTCATGACAACAATTGCTGTCAATTTAGCCGTCGTGCATGGT TATGGCAGGCGAAAAGCAGATATGGGAGAGGGTATACATATAGCTTTGAAGTGGTTTTTTGTTGCCCAGATTCCA TATAAGATTGCCCTCGGCTTTACCAAAGCTTCTATCGTCCTCCTTTACCTCCGAGTATTTATCACAGAGTCTTTC CAGCGCGTGGGAAAGGGTTTCCTAACCGTCATCGCCGCATGGACAGTCGCATCAGTCCTCGTCACAATCTTTCAG TGTATCCCAATCGAAGCTTCTTGGAACCATAATATCAAAGTCAAACAATGCGTGGACAAAGATAGCTGGTGGTAT GCATTTGCGGGAATTAACACGGTTACTGACGTTCTGATCGCCATTCTCCCCATTCCCCCAGTTCGCCACCTGAAG CTCTCGAAGCGCGACCGGATTGGGTTGTGTTTTGTTTTCGGTGTTGGAGCATTTGTCTGCGTCACTAGTATCATG CGTACGGTTGCAGTGTCTCAAACATCGACTGGCTTAGATCAAAGCTGGGATTTCATCCCTCGCTCAGTCTGGACT CTCGTGGAGTGCAATATGGGAATAATCTGTGCGTGTCTCCCTATGATGCGCCGGCCGCTAAGTTTTCTGTTTCCG TGGCTTTTCAGAGGCTCTTCTCGGAATGAATCAGAAAGACTTAGCTATGTTCCCATTGAGTTGAGGTATACAAAT CGCCAACTGCGTCCGCGAGGGAGTCAAAGCCAGGAGGAAATTCTACAGTCAGATGTGCGAGATAAAAGGGCTTTG GCGGCTGAGGAATAA |
| Transcript | >Pro_DTO377G3_2|g4569.t1 ATGGTGCTCACTGCGGCCATATTTGTTACCATTCGGCTAGCAACGAGGATTCATCTGAAAAAATTCGGTTGGGAT GATCTGTTCCTCGTCATCGCCCTAGCGGCATCGGTCATGACAACAATTGCTGTCAATTTAGCCGTCGTGCATGGT TATGGCAGGCGAAAAGCAGATATGGGAGAGGGTATACATATAGCTTTGAAGTGGTTTTTTGTTGCCCAGATTCCA TATAAGATTGCCCTCGGCTTTACCAAAGCTTCTATCGTCCTCCTTTACCTCCGAGTATTTATCACAGAGTCTTTC CAGCGCGTGGGAAAGGGTTTCCTAACCGTCATCGCCGCATGGACAGTCGCATCAGTCCTCGTCACAATCTTTCAG TGTATCCCAATCGAAGCTTCTTGGAACCATAATATCAAAGTCAAACAATGCGTGGACAAAGATAGCTGGTGGTAT GCATTTGCGGGAATTAACACGGTTACTGACGTTCTGATCGCCATTCTCCCCATTCCCCCAGTTCGCCACCTGAAG CTCTCGAAGCGCGACCGGATTGGGTTGTGTTTTGTTTTCGGTGTTGGAGCATTTGTCTGCGTCACTAGTATCATG CGTACGGTTGCAGTGTCTCAAACATCGACTGGCTTAGATCAAAGCTGGGATTTCATCCCTCGCTCAGTCTGGACT CTCGTGGAGTGCAATATGGGAATAATCTGTGCGTGTCTCCCTATGATGCGCCGGCCGCTAAGTTTTCTGTTTCCG TGGCTTTTCAGAGGCTCTTCTCGGAATGAATCAGAAAGACTTAGCTATGTTCCCATTGAGTTGAGGTATACAAAT CGCCAACTGCGTCCGCGAGGGAGTCAAAGCCAGGAGGAAATTCTACAGTCAGATGTGCGAGATAAAAGGGCTTTG GCGGCTGAGGAATAA |
| Gene | >Pro_DTO377G3_2|g4569.t1 ATGGTGCTCACTGCGGCCATATTTGTTACCATTCGGCTAGCAACGAGGATTCATCTGAAAAAATTCGGTTGGGAT GATCTGTTCCTCGTCATCGCCCTAGCGGCATCGGTCATGACAACAATTGCTGTCAATTTAGGTAAGTCAAAAGAC ATCTGATGGCGGGTCTTTTAGTCACAAGCTGACCTTTGGTTTCCAGCCGTCGTGCATGGTTATGGCAGGCGAAAA GCAGATATGGGAGAGGGTATACATATAGCTTTGAAGGTGCAGTGATATCAACGGTAGCTAATGCTCGTTCAAATC TCTAACACTCCCCGAAGTGGTTTTTTGTTGCCCAGATTCCATATAAGATTGCCCTCGGCTTTACCAAAGCTTCTA TCGTCCTCCTTTACCTCCGAGTATTTATCACAGAGTCTTTCCAGCGCGTGGGAAAGGGTTTCCTAACCGTCATCG CCGCATGGACAGTCGCATCAGTCCTCGTCACAATCTTTCAGTGTATCCCAATCGAAGCTTCTTGGAACCATAATA TCAAAGTCAAACAATGCGTGGACAAAGATAGCTGGTGGTATGCATTTGCGGGAATTAACACGGTTACTGACGTTC TGATCGCCATTCTCCCCATTCCCCCAGTTCGCCACCTGAAGCTCTCGAAGCGCGACCGGATTGGGTTGTGTTTTG TTTTCGGTGTTGGAGCATTGTATGTATCATTTCATCCTCTCTTCTCTATGCATTAATCAGGAGTCTCATGTGTAC ATAGTGTCTGCGTCACTAGTATCATGCGTACGGTTGCAGTGTCTCAAACATCGACTGGCTTAGATCAAAGCTGTG AGTATCTTGGGAGCCTCGAAAAAAGGGAATGCAGAGAACAGTTGCTGATCAAATTTTACTATAGGGGATTTCATC CCTCGCTCAGTCTGGACTCTCGTGGAGTGCAATATGGGAATAATCTGTGCGTGTCTCCCTATGATGCGCCGGCCG CTAAGTTTTCTGTTTCCGTGGCTTTTCAGAGGCTCTTCTCGGAATGAATCAGAAAGACTTAGCTATGTTCCCATT GAGTTGAGGTATACAAATCGCCAACTGCGTCCGCGAGGGAGTCAAAGCCAGGAGGAAATTCTACAGTCAGATGTG CGAGATAAAAGGGCTTTGGCGGCTGAGGAATAA |