© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4568.t1 |
| Gene name | |
| Location | scaffold_09:582199..583997 |
| Strand | - |
| Gene length (bp) | 1798 |
| Transcript length (bp) | 1500 |
| Coding sequence length (bp) | 1500 |
| Protein length (aa) | 500 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00135 | COesterase | Carboxylesterase family | 1.5E-74 | 22 | 363 |
| PF00135 | COesterase | Carboxylesterase family | 2.7E-07 | 360 | 477 |
| PF07859 | Abhydrolase_3 | alpha/beta hydrolase fold | 1.3E-08 | 130 | 253 |
| PF20434 | BD-FAE | BD-FAE | 1.0E-06 | 114 | 217 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.82 | 0.70 | 4.95 |
| 5d_25C | Five days - 25 degrees Celsius | 2.13 | 0.34 | 3.92 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.36 | 0.41 | 4.32 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.87 | 0.03 | 1.71 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.01 | 0.00 | 2.07 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.56 | 0.55 | 4.57 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.609870 | no |
| 3d_25C | 7d_25C | 0.763241 | no |
| 3d_25C | 7d_15C | 0.057236 | no |
| 3d_25C | 7d_30C | 0.871004 | no |
| 3d_25C | 10d_25C | 0.025128 | yes |
| 5d_25C | 7d_25C | 0.882888 | no |
| 5d_25C | 7d_15C | 0.202459 | no |
| 5d_25C | 7d_30C | 0.769140 | no |
| 5d_25C | 10d_25C | 0.101883 | no |
| 7d_25C | 7d_15C | 0.128266 | no |
| 7d_25C | 7d_30C | 0.909279 | no |
| 7d_25C | 10d_25C | 0.060029 | no |
| 7d_15C | 7d_30C | 0.093704 | no |
| 7d_15C | 10d_25C | 0.866646 | no |
| 7d_30C | 10d_25C | 0.038776 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4568.t1 MRVIWLAFAVVAVARQAHVGSNGIIQGHEASKNPGVTEWLGVPYAQPPVEQLRFVPPQPYTPRGVHVASEYGKDC MYSVSKLVDYPDKTPQFDSIFEAFAAINNNTQSEDCLTLNIWSKPDSNQLKPVYVHFYGGRWTSGTTDTPFYYGG GFAGTEDVIVVTVNYRMNIFGFPGLPGHPPNLGLLDQRLAVEWVKQNIRGFGGDPNRITISGQSCGSASVDYWAY AYQSEPLVTGLISHSGTALSFPTNNRTTAAEHWYTVSAQLGCGSSGDVLPCMRKQNASAILAAASAVKVPTTNPA RKSPAFQPTVDDVTVFENYTLLSQQGKFARIPYLVGHNANEAGFYKIATYAQGSTLTDEQWDDFNMQTFFCPSNL EAAHRSRRHTPVWRFQYNADWENTRLYPTSGAYHGVEFNMIFGESAEITGIAESDAQRQLQVQMRSAWGSFIADP EHGLKALGWPSYDPDASTLVEIGLDNRPSVSFVGTENSAQRCAALLAQI* |
| Coding | >Pro_DTO377G3_2|g4568.t1 ATGCGAGTAATATGGCTGGCCTTCGCAGTGGTTGCCGTAGCGCGACAGGCCCATGTCGGGTCGAATGGAATCATT CAGGGCCATGAGGCATCAAAGAATCCAGGGGTCACGGAATGGCTCGGAGTTCCTTACGCGCAGCCGCCTGTCGAG CAATTGCGATTCGTACCGCCCCAACCTTACACGCCGAGGGGTGTTCATGTCGCCTCAGAATATGGAAAAGACTGC ATGTACTCGGTGTCGAAGCTGGTCGACTATCCCGACAAAACTCCGCAATTTGACAGCATCTTCGAGGCCTTCGCG GCTATAAATAACAACACTCAAAGTGAAGACTGCTTGACTCTGAATATTTGGTCAAAGCCAGACTCAAATCAACTC AAGCCCGTCTATGTTCATTTTTACGGTGGTAGATGGACAAGTGGCACGACTGATACTCCTTTTTATTATGGAGGC GGATTTGCTGGTACTGAGGATGTAATCGTTGTCACGGTCAACTACCGCATGAACATATTCGGGTTTCCTGGCCTG CCTGGACACCCTCCTAATCTTGGTCTACTAGACCAACGTCTAGCCGTTGAATGGGTGAAGCAAAATATTCGTGGA TTCGGGGGTGATCCTAACCGCATCACTATATCTGGCCAGTCTTGCGGAAGTGCTTCTGTTGATTATTGGGCGTAC GCCTACCAGTCCGAACCCCTAGTTACCGGTTTGATCTCGCATTCCGGCACAGCTCTCAGCTTCCCAACAAACAAT AGGACAACTGCAGCGGAGCATTGGTATACTGTGTCTGCCCAGTTAGGCTGTGGGTCTTCAGGGGATGTTCTGCCG TGCATGAGAAAGCAGAATGCGAGTGCCATTCTCGCCGCTGCTAGTGCAGTGAAGGTTCCGACTACAAACCCTGCA AGGAAATCCCCGGCTTTCCAGCCCACCGTGGACGACGTGACTGTTTTTGAGAATTACACTCTTCTTTCGCAGCAA GGAAAATTCGCCCGCATCCCCTACTTGGTCGGGCACAACGCCAATGAAGCGGGATTCTACAAGATCGCGACCTAC GCCCAGGGATCGACACTGACAGACGAACAGTGGGATGATTTCAACATGCAAACATTCTTCTGCCCATCCAATCTC GAAGCCGCACACCGAAGTCGTCGACATACACCAGTTTGGCGCTTTCAATACAACGCGGACTGGGAGAATACCCGT CTTTACCCTACCAGTGGAGCATACCATGGTGTCGAATTTAACATGATTTTTGGAGAATCTGCTGAAATTACTGGG ATTGCTGAGTCTGATGCGCAGCGCCAGCTGCAGGTTCAGATGCGATCCGCCTGGGGATCATTCATCGCTGATCCC GAACACGGACTGAAAGCCCTGGGATGGCCCAGTTATGATCCTGACGCTTCGACACTTGTTGAAATCGGTCTCGAT AATCGTCCCAGCGTGTCTTTTGTAGGCACGGAAAACTCTGCTCAGCGGTGTGCAGCTTTGCTGGCGCAAATATGA |
| Transcript | >Pro_DTO377G3_2|g4568.t1 ATGCGAGTAATATGGCTGGCCTTCGCAGTGGTTGCCGTAGCGCGACAGGCCCATGTCGGGTCGAATGGAATCATT CAGGGCCATGAGGCATCAAAGAATCCAGGGGTCACGGAATGGCTCGGAGTTCCTTACGCGCAGCCGCCTGTCGAG CAATTGCGATTCGTACCGCCCCAACCTTACACGCCGAGGGGTGTTCATGTCGCCTCAGAATATGGAAAAGACTGC ATGTACTCGGTGTCGAAGCTGGTCGACTATCCCGACAAAACTCCGCAATTTGACAGCATCTTCGAGGCCTTCGCG GCTATAAATAACAACACTCAAAGTGAAGACTGCTTGACTCTGAATATTTGGTCAAAGCCAGACTCAAATCAACTC AAGCCCGTCTATGTTCATTTTTACGGTGGTAGATGGACAAGTGGCACGACTGATACTCCTTTTTATTATGGAGGC GGATTTGCTGGTACTGAGGATGTAATCGTTGTCACGGTCAACTACCGCATGAACATATTCGGGTTTCCTGGCCTG CCTGGACACCCTCCTAATCTTGGTCTACTAGACCAACGTCTAGCCGTTGAATGGGTGAAGCAAAATATTCGTGGA TTCGGGGGTGATCCTAACCGCATCACTATATCTGGCCAGTCTTGCGGAAGTGCTTCTGTTGATTATTGGGCGTAC GCCTACCAGTCCGAACCCCTAGTTACCGGTTTGATCTCGCATTCCGGCACAGCTCTCAGCTTCCCAACAAACAAT AGGACAACTGCAGCGGAGCATTGGTATACTGTGTCTGCCCAGTTAGGCTGTGGGTCTTCAGGGGATGTTCTGCCG TGCATGAGAAAGCAGAATGCGAGTGCCATTCTCGCCGCTGCTAGTGCAGTGAAGGTTCCGACTACAAACCCTGCA AGGAAATCCCCGGCTTTCCAGCCCACCGTGGACGACGTGACTGTTTTTGAGAATTACACTCTTCTTTCGCAGCAA GGAAAATTCGCCCGCATCCCCTACTTGGTCGGGCACAACGCCAATGAAGCGGGATTCTACAAGATCGCGACCTAC GCCCAGGGATCGACACTGACAGACGAACAGTGGGATGATTTCAACATGCAAACATTCTTCTGCCCATCCAATCTC GAAGCCGCACACCGAAGTCGTCGACATACACCAGTTTGGCGCTTTCAATACAACGCGGACTGGGAGAATACCCGT CTTTACCCTACCAGTGGAGCATACCATGGTGTCGAATTTAACATGATTTTTGGAGAATCTGCTGAAATTACTGGG ATTGCTGAGTCTGATGCGCAGCGCCAGCTGCAGGTTCAGATGCGATCCGCCTGGGGATCATTCATCGCTGATCCC GAACACGGACTGAAAGCCCTGGGATGGCCCAGTTATGATCCTGACGCTTCGACACTTGTTGAAATCGGTCTCGAT AATCGTCCCAGCGTGTCTTTTGTAGGCACGGAAAACTCTGCTCAGCGGTGTGCAGCTTTGCTGGCGCAAATATGA |
| Gene | >Pro_DTO377G3_2|g4568.t1 ATGCGAGTAATATGGCTGGCCTTCGCAGTGGTTGCCGTAGCGCGACAGGCCCATGTCGGGTCGAATGGAATCATT CAGGGCCATGAGGCATCAAAGAATCCAGGGGTCACGGAATGGCTCGGAGTTCCTTACGCGCAGCCGCCTGTCGAG CAATTGCGATTCGTACCGCCCCAACCTTACACGCCGAGGGGTGTTCATGTCGCCTCAGAATATGTATGGTCTCAA CTTATCCCTTACACCCGAAGTGCATAAAATGTATGAATGTCTGACATGAACGTAACATAGGGAAAGTGAGTGCTA TTTGCGGTGATTGTATTCTACTTTCTTTAACAGCAATCTACAGAGACTGCATGTACTCGGTGTCGAAGCTGGTCG ACTATCCCGACAAAACTCCGCAATTTGACAGCATCTTCGAGGCCTTCGCGGCTATAAATAACAACACTCAAAGTG AAGACTGCTTGACTCTGAATATTTGGTCAAAGCCAGACTCAAATCAACTCAAGCCCGTCTATGTTCATTTTTACG GTGGTAGTAAGTTTTTGCTACTTATTTTCCAATGTCTTGTTTCTGATCCATGTTATAGGATGGACAAGTGGCACG ACTGATACTCCTTTTTATTATGGAGGCGGATTTGCTGGTACTGAGGATGTAATCGTTGTCACGGTCAACTACCGC ATGAACATATTCGGGTTTCCTGGCCTGCCTGGACACCCTCCTAATCTTGGTCTACTAGACCAACGTCTAGCCGTT GAATGGGTGAAGCAAAATATTCGTGGATTCGGGGGTGATCCTAACCGCATCACTATATCTGGCCAGTCTTGCGGA AGTGCTTCTGTTGATTATTGGGCGTACGCCTACCAGTCCGAACCCCTAGTTACCGGTTTGATCTCGCATTCCGGC ACAGCTCTCAGCTTCCCAACAAACAATAGGACAACTGCAGCGGAGCATTGGTATACTGTGTCTGCCCAGTTAGGC TGTGGGTCTTCAGGGGATGTTCTGCCGTGCATGAGAAAGCAGAATGCGAGTGCCATTCTCGCCGCTGCTAGTGCA GTGAAGGTTCCGACTACAAACCCTGCAAGGAAATCCCCGGCTTTCCAGCCCACCGTGGACGACGTGACTGTTTTT GAGAATTACACTCTTCTTTCGCAGCAAGGAAAATTCGCCCGCATCGTGAGTGGGCTCTCCTACATCTCAAATATA GTCGATGGGTCAATGTAGCTACTAACCATATTCTCCAACAGCCCTACTTGGTCGGGCACAACGCCAATGAAGCGG GATTCTACAAGATCGCGACCTACGCCCAGGGATCGACACTGACAGACGAACAGTGGGATGATTTCAACATGCAAA CATTCTTCTGCCCATCCAATCTCGAAGCCGCACACCGAAGTCGTCGACATACACCAGTTTGGCGCTTTCAATACA ACGCGGACTGGGAGAATACCCGTCTTTACCCTACCAGTGGAGCATACCATGGTGTCGAATTTAACATGATTTTTG GAGAATCTGCTGAAATTACTGGGATTGCTGAGTCTGATGCGCAGCGCCAGCTGCAGGTTCAGATGCGATCCGCCT GGGGATCATTCATCGCTGATCCCGAACACGGACTGAAAGCCCTGGGATGGCCCAGTTATGATCCTGACGGTGAGT CCACACTGCTTCGATCGAGATGATTTGTTCCTTAACATTATTAGCTTCGACACTTGTTGAAATCGGTCTCGATAA TCGTCCCAGCGTGTCTTTTGTAGGCACGGAAAACTCTGCTCAGCGGTGTGCAGCTTTGCTGGCGCAAATATGA |