© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4567.t1 |
| Gene name | |
| Location | scaffold_09:580723..581734 |
| Strand | + |
| Gene length (bp) | 1011 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07859 | Abhydrolase_3 | alpha/beta hydrolase fold | 2.6E-42 | 74 | 306 |
| PF20434 | BD-FAE | BD-FAE | 3.1E-20 | 68 | 214 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 257.71 | 156.50 | 358.93 |
| 5d_25C | Five days - 25 degrees Celsius | 412.38 | 242.24 | 582.53 |
| 7d_25C | Seven days - 25 degrees Celsius | 489.83 | 280.10 | 699.57 |
| 10d_25C | Ten days - 25 degrees Celsius | 803.89 | 445.86 | 1161.92 |
| 7d_15C | Seven days - 15 degrees Celsius | 330.08 | 194.21 | 465.96 |
| 7d_30C | Seven days - 30 degrees Celsius | 464.24 | 264.19 | 664.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.026091 | yes |
| 3d_25C | 7d_25C | 0.003625 | yes |
| 3d_25C | 7d_15C | 0.299545 | no |
| 3d_25C | 7d_30C | 0.004840 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.545491 | no |
| 5d_25C | 7d_15C | 0.383303 | no |
| 5d_25C | 7d_30C | 0.689648 | no |
| 5d_25C | 10d_25C | 0.003197 | yes |
| 7d_25C | 7d_15C | 0.084587 | no |
| 7d_25C | 7d_30C | 0.877042 | no |
| 7d_25C | 10d_25C | 0.032406 | yes |
| 7d_15C | 7d_30C | 0.143169 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.016098 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4567.t1 MASSRWWLYVQAIFWRFLMRIGMFLHEIGPRPPRPLFTRTVISDSHCHPVVLHFYCPPDYPEQRRLGHRFPVAVN FHGGGFTLGAATDDSRWAKMVLEDTGAVMVSVGYRRAPEHPFPAAVDDGVEALLYLATHASELGLDVSRVALSGF SAGGNLAVTVPLRLRGRISTEVKEHLGRAESTQNLLSQVGDLHIVALFSWYPILDFEESRDHRRAMSLMPDKTLP AFFTTLFDEAYLPDLDERISPYASPIHASDRILSEALPRDVFFFICEWDMLMKEGQSFVRRLESLGKRPRAMLIE KARHAWDKSPNPWRDQNRVDLLYRDACADMKAIFDR* |
| Coding | >Pro_DTO377G3_2|g4567.t1 ATGGCTTCGTCTCGTTGGTGGCTGTATGTACAGGCCATATTTTGGCGGTTTCTGATGCGCATTGGCATGTTCTTG CACGAGATTGGTCCGCGCCCACCCCGACCGTTATTCACCCGTACCGTGATATCCGACTCCCATTGCCATCCGGTC GTCCTCCACTTTTACTGTCCACCGGATTATCCAGAGCAGCGAAGGCTAGGCCATCGCTTCCCTGTCGCTGTGAAC TTCCACGGAGGCGGTTTCACGCTCGGTGCTGCTACCGATGATTCTCGCTGGGCGAAAATGGTGCTGGAGGATACC GGCGCCGTGATGGTGAGTGTCGGCTACCGGCGAGCCCCCGAACACCCTTTTCCTGCGGCAGTAGACGACGGAGTC GAGGCCCTACTGTACCTGGCAACACATGCCAGTGAACTGGGATTGGATGTGAGCCGAGTGGCGTTGAGCGGGTTC TCGGCAGGCGGCAACCTGGCTGTCACGGTGCCCTTGCGACTGCGTGGCAGAATATCCACCGAAGTGAAGGAACAT TTGGGTCGAGCCGAATCCACGCAAAATCTGCTCAGTCAGGTCGGCGATCTTCACATCGTTGCATTGTTCTCTTGG TATCCGATTCTGGACTTTGAAGAATCTCGCGATCACCGTCGCGCTATGAGTCTGATGCCGGACAAGACTCTCCCT GCATTTTTCACCACACTCTTTGATGAGGCCTATCTTCCTGATTTGGACGAACGTATATCCCCCTATGCATCTCCC ATCCACGCATCTGACCGTATCCTGTCTGAAGCTCTTCCCCGCGACGTCTTTTTCTTTATTTGCGAATGGGATATG TTGATGAAGGAGGGTCAATCTTTCGTTCGCCGATTAGAGAGCCTCGGTAAACGTCCTCGCGCCATGCTTATTGAG AAAGCCCGGCATGCGTGGGATAAGTCACCTAATCCGTGGCGGGACCAAAATCGCGTGGACCTTTTATACCGCGAT GCCTGTGCGGATATGAAGGCTATCTTTGACCGGTGA |
| Transcript | >Pro_DTO377G3_2|g4567.t1 ATGGCTTCGTCTCGTTGGTGGCTGTATGTACAGGCCATATTTTGGCGGTTTCTGATGCGCATTGGCATGTTCTTG CACGAGATTGGTCCGCGCCCACCCCGACCGTTATTCACCCGTACCGTGATATCCGACTCCCATTGCCATCCGGTC GTCCTCCACTTTTACTGTCCACCGGATTATCCAGAGCAGCGAAGGCTAGGCCATCGCTTCCCTGTCGCTGTGAAC TTCCACGGAGGCGGTTTCACGCTCGGTGCTGCTACCGATGATTCTCGCTGGGCGAAAATGGTGCTGGAGGATACC GGCGCCGTGATGGTGAGTGTCGGCTACCGGCGAGCCCCCGAACACCCTTTTCCTGCGGCAGTAGACGACGGAGTC GAGGCCCTACTGTACCTGGCAACACATGCCAGTGAACTGGGATTGGATGTGAGCCGAGTGGCGTTGAGCGGGTTC TCGGCAGGCGGCAACCTGGCTGTCACGGTGCCCTTGCGACTGCGTGGCAGAATATCCACCGAAGTGAAGGAACAT TTGGGTCGAGCCGAATCCACGCAAAATCTGCTCAGTCAGGTCGGCGATCTTCACATCGTTGCATTGTTCTCTTGG TATCCGATTCTGGACTTTGAAGAATCTCGCGATCACCGTCGCGCTATGAGTCTGATGCCGGACAAGACTCTCCCT GCATTTTTCACCACACTCTTTGATGAGGCCTATCTTCCTGATTTGGACGAACGTATATCCCCCTATGCATCTCCC ATCCACGCATCTGACCGTATCCTGTCTGAAGCTCTTCCCCGCGACGTCTTTTTCTTTATTTGCGAATGGGATATG TTGATGAAGGAGGGTCAATCTTTCGTTCGCCGATTAGAGAGCCTCGGTAAACGTCCTCGCGCCATGCTTATTGAG AAAGCCCGGCATGCGTGGGATAAGTCACCTAATCCGTGGCGGGACCAAAATCGCGTGGACCTTTTATACCGCGAT GCCTGTGCGGATATGAAGGCTATCTTTGACCGGTGA |
| Gene | >Pro_DTO377G3_2|g4567.t1 ATGGCTTCGTCTCGTTGGTGGCTGTATGTACAGGCCATATTTTGGCGGTTTCTGATGCGCATTGGCATGTTCTTG CACGAGATTGGTCCGCGCCCACCCCGACCGTTATTCACCCGTACCGTGATATCCGACTCCCATTGCCATCCGGTC GTCCTCCACTTTTACTGTCCACCGGATTATCCAGAGCAGCGAAGGCTAGGCCATCGCTTCCCTGTCGCTGTGAAC TTCCACGGAGGCGGTTTCACGCTCGGTGCTGCTACCGATGATTCTCGCTGGGCGAAAATGGTGCTGGAGGATACC GGCGCCGTGATGGTGAGTGTCGGCTACCGGCGAGCCCCCGAACACCCTTTTCCTGCGGCAGTAGACGACGGAGTC GAGGCCCTACTGTACCTGGCAACACATGCCAGTGAACTGGGATTGGATGTGAGCCGAGTGGCGTTGAGCGGGTTC TCGGCAGGCGGCAACCTGGCTGTCACGGTGCCCTTGCGACTGCGTGGCAGAATATCCACCGAAGTGAAGGAACAT TTGGGTCGAGCCGAATCCACGCAAAATCTGCTCAGTCAGGTCGGCGATCTTCACATCGTTGCATTGTTCTCTTGG TATCCGATTCTGGACTTTGAAGAATCTCGCGATCACCGTCGCGCTATGAGTCTGATGCCGGACAAGACTCTCCCT GCATTTTTCACCACACTCTTTGATGAGGCCTATCTTCCTGATTTGGACGAACGTATATCCCCCTATGCATCTCCC ATCCACGCATCTGACCGTATCCTGTCTGAAGCTCTTCCCCGCGACGTCTTTTTCTTTATTTGCGAATGGGATATG TTGATGAAGGAGGGTCAATCTTTCGTTCGCCGATTAGAGAGCCTCGGTAAACGTCCTCGCGCCATGCTTATTGAG AAAGCCCGGCATGCGTGGGATAAGTCACCTAATCCGTGGCGGGACCAAAATCGCGTGGACCTTTTATACCGCGAT GCCTGTGCGGATATGAAGGCTATCTTTGACCGGTGA |