© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g4562.t1 |
| Gene name | |
| Location | scaffold_09:564609..565957 |
| Strand | - |
| Gene length (bp) | 1348 |
| Transcript length (bp) | 1044 |
| Coding sequence length (bp) | 1044 |
| Protein length (aa) | 348 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05462 | Dicty_CAR | Slime mold cyclic AMP receptor | 4.1E-07 | 17 | 188 |
| PF11710 | Git3 | G protein-coupled glucose receptor regulating Gpa2 | 2.1E-05 | 17 | 194 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 48 | 70 | 22 |
| 3 | 85 | 107 | 22 |
| 4 | 120 | 142 | 22 |
| 5 | 167 | 189 | 22 |
| 6 | 269 | 291 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.41 | 0.00 | 1.01 |
| 5d_25C | Five days - 25 degrees Celsius | 0.88 | 0.00 | 1.92 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.81 | 0.00 | 1.77 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.79 | 0.16 | 3.42 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.45 | 0.00 | 1.09 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.14 | 0.00 | 2.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.335045 | no |
| 3d_25C | 7d_25C | 0.423099 | no |
| 3d_25C | 7d_15C | 1.000000 | no |
| 3d_25C | 7d_30C | 0.174937 | no |
| 3d_25C | 10d_25C | 0.058466 | no |
| 5d_25C | 7d_25C | 0.923556 | no |
| 5d_25C | 7d_15C | 0.410168 | no |
| 5d_25C | 7d_30C | 0.754126 | no |
| 5d_25C | 10d_25C | 0.244062 | no |
| 7d_25C | 7d_15C | 0.493061 | no |
| 7d_25C | 7d_30C | 0.654499 | no |
| 7d_25C | 10d_25C | 0.191363 | no |
| 7d_15C | 7d_30C | 0.217893 | no |
| 7d_15C | 10d_25C | 0.072166 | no |
| 7d_30C | 10d_25C | 0.469284 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 8822 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4562.t1 MSYTPEELNRIAIAGRISSVLSILGSFTIIGAFALSRHFRSPIHRIIFFNAFYNLFDSVATMISTSGPAAGDTSS LCQFQGFALQMFPVADVLWTFAMALDTYLVVFYHFDTLSLRKLEVKYISVITALSFIPAFVFLFIRGHEKGPIYG DETIWCSVARSWMILRIIFYYAPVWLIIVIVLILYSLIGIEITRVRDEFKLSEDDHIALTSNNSASSITTSADAN SRRKTGLTPESTITSDITEQNTFQRPPPSRNASTTYQTPKQRRVSLRQYVIMPSLFFLAMLATWIAPTINRIAEF AHHEHGSYSLLLSGGSDELRRGGWLLDRIEIFVGDMDLMMPSFCMFK* |
| Coding | >Pro_DTO377G3_2|g4562.t1 ATGTCGTACACTCCCGAGGAGCTCAACCGGATTGCCATTGCAGGGCGAATCTCTTCAGTGCTCTCTATTCTGGGC TCATTCACAATAATCGGCGCCTTTGCTCTCTCGCGACACTTCCGGAGCCCTATTCATCGTATAATATTTTTCAAT GCCTTTTATAATCTGTTCGACTCTGTCGCCACCATGATATCCACTAGTGGACCTGCAGCTGGGGATACTTCGTCG CTATGCCAATTCCAAGGCTTCGCGCTGCAGATGTTTCCAGTAGCCGACGTGCTCTGGACATTCGCAATGGCCTTG GATACATACTTGGTTGTCTTCTATCATTTTGATACTCTGTCTTTGCGCAAGCTCGAAGTCAAATACATTAGTGTT ATCACTGCTCTCTCCTTCATACCTGCCTTTGTCTTTCTCTTCATCCGCGGTCATGAGAAAGGTCCTATATATGGC GACGAAACCATCTGGTGCTCAGTAGCTCGCAGTTGGATGATCCTGCGCATAATCTTCTACTATGCACCCGTATGG CTGATAATAGTAATCGTCCTAATACTGTACTCTCTCATCGGTATCGAGATAACCAGAGTGCGCGACGAGTTCAAA TTGAGCGAGGACGATCACATCGCTCTGACCTCTAACAACTCCGCTAGCAGCATCACGACAAGCGCGGATGCGAAT TCCCGGAGAAAAACTGGGTTGACCCCAGAATCTACCATAACAAGCGATATCACGGAACAAAATACGTTCCAGCGT CCGCCTCCATCCAGAAACGCCTCGACTACTTATCAAACCCCGAAACAGAGACGTGTGTCGCTGAGGCAGTATGTG ATCATGCCATCGCTTTTCTTCCTAGCGATGCTAGCAACGTGGATTGCACCGACCATCAACCGTATCGCGGAATTC GCGCATCATGAGCATGGATCTTACTCGCTTCTGCTCTCCGGTGGAAGCGACGAGCTTCGGAGAGGAGGATGGCTC TTAGACAGAATAGAAATCTTCGTGGGTGACATGGATCTCATGATGCCATCGTTCTGCATGTTCAAATGA |
| Transcript | >Pro_DTO377G3_2|g4562.t1 ATGTCGTACACTCCCGAGGAGCTCAACCGGATTGCCATTGCAGGGCGAATCTCTTCAGTGCTCTCTATTCTGGGC TCATTCACAATAATCGGCGCCTTTGCTCTCTCGCGACACTTCCGGAGCCCTATTCATCGTATAATATTTTTCAAT GCCTTTTATAATCTGTTCGACTCTGTCGCCACCATGATATCCACTAGTGGACCTGCAGCTGGGGATACTTCGTCG CTATGCCAATTCCAAGGCTTCGCGCTGCAGATGTTTCCAGTAGCCGACGTGCTCTGGACATTCGCAATGGCCTTG GATACATACTTGGTTGTCTTCTATCATTTTGATACTCTGTCTTTGCGCAAGCTCGAAGTCAAATACATTAGTGTT ATCACTGCTCTCTCCTTCATACCTGCCTTTGTCTTTCTCTTCATCCGCGGTCATGAGAAAGGTCCTATATATGGC GACGAAACCATCTGGTGCTCAGTAGCTCGCAGTTGGATGATCCTGCGCATAATCTTCTACTATGCACCCGTATGG CTGATAATAGTAATCGTCCTAATACTGTACTCTCTCATCGGTATCGAGATAACCAGAGTGCGCGACGAGTTCAAA TTGAGCGAGGACGATCACATCGCTCTGACCTCTAACAACTCCGCTAGCAGCATCACGACAAGCGCGGATGCGAAT TCCCGGAGAAAAACTGGGTTGACCCCAGAATCTACCATAACAAGCGATATCACGGAACAAAATACGTTCCAGCGT CCGCCTCCATCCAGAAACGCCTCGACTACTTATCAAACCCCGAAACAGAGACGTGTGTCGCTGAGGCAGTATGTG ATCATGCCATCGCTTTTCTTCCTAGCGATGCTAGCAACGTGGATTGCACCGACCATCAACCGTATCGCGGAATTC GCGCATCATGAGCATGGATCTTACTCGCTTCTGCTCTCCGGTGGAAGCGACGAGCTTCGGAGAGGAGGATGGCTC TTAGACAGAATAGAAATCTTCGTGGGTGACATGGATCTCATGATGCCATCGTTCTGCATGTTCAAATGA |
| Gene | >Pro_DTO377G3_2|g4562.t1 ATGTCGTACACTCCCGAGGAGCTCAACCGGATTGCCATTGCAGGGCGAATCTCTTCAGTGCTCTCTATTCTGGGC TCATTCACAATAATCGGCGCCTTTGCTCTCTCGCGACACTTCCGGAGCCCTATTCATCGTATAATATTTTTCAAT GCCTTTTATAATCTGTTCGACTCTGTCGCCACCATGATATCCACTAGTGGACCTGCAGCTGGGGATACTTCGTCG CTATGCCAATTCCAAGGCTTCGCGCTGCAGATGTATGTGGCATTGACAGAGATTTGTCGAGGCAATTTGGTTCGC AAAGACATTCTAACCCCAAAAATATAGGTTTCCAGTAGCCGACGTGCTCTGGACATTCGCAATGGCCTTGGATAC ATACTTGGTTGTCTTCTATCATTTTGATACTCTGTCTTTGCGCAAGCTCGAAGTCAAATACATTAGTGTTATCAC TGCTCTCTCCTTCATACCTGCCTTTGTCTTTCTCTTCATCCGCGGTCATGAGAAAGGTCCTATATATGGCGACGA AACCGTGAGTACCAATCGACTTGAAGCTAAACATTGAGGCTGAAAACTTCTATAGATCTGGTGCTCAGTAGCTCG CAGTTGGATGATCCTGCGCATAATCTTCTACTATGCACCCGTATGGTACGCATACTTCCATTCGCCCGCCCAAGC ACTCTTCTAATAGTTCCACAACAGGCTGATAATAGTAATCGTCCTAATACTGTACTCTCTCATCGGTATCGAGAT AACCAGAGTGCGCGACGAGTTCAAATTGAGCGAGGACGATCACATCGCTCTGACCTCTAACAACTCCGCTAGCAG CATCACGACAAGCGCGGATGCGAATTCCCGGAGAAAAACTGGGTTGACCCCAGAATCTACCATAACAAGCGATAT CACGGAACAAAATACGTTCCAGCGTCCGCCTCCATCCAGAAACGCCTCGACTACTTATCAAACCCCGAAACAGAG ACGTGTGTCGCTGAGGCAGTATGTGATCATGCCATCGCTTTTCTTCCTAGCGATGCTAGCAACGTGGATTGCACC GACCATCAACCGTATCGCGGAATTCGCGCATCATGAGCATGGATCTTACTCGCTTCTGCTCTCCGTGAGTACGTT GGGGTCCCTGCGTGGCTTTTGGAATGGTGTTATTTTCATCACTATCGGTATGAAAGGGTGGAAGCGACGAGCTTC GGAGAGGAGGATGGCTCTTAGACAGGTAAGATTGTCTTTTTCTATCTCCACCTCAGTTGAGTAGCTGCTGACTTT ACGATATTATAGAATAGAAATCTTCGTGGGTGACATGGATCTCATGATGCCATCGTTCTGCATGTTCAAATGA |