Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4562.t1
Gene name
Locationscaffold_09:564609..565957
Strand-
Gene length (bp)1348
Transcript length (bp)1044
Coding sequence length (bp)1044
Protein length (aa) 348

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05462 Dicty_CAR Slime mold cyclic AMP receptor 4.1E-07 17 188
PF11710 Git3 G protein-coupled glucose receptor regulating Gpa2 2.1E-05 17 194

GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 13 35 22
2 48 70 22
3 85 107 22
4 120 142 22
5 167 189 22
6 269 291 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.41 0.00 1.01
5d_25C Five days - 25 degrees Celsius 0.88 0.00 1.92
7d_25C Seven days - 25 degrees Celsius 0.81 0.00 1.77
10d_25C Ten days - 25 degrees Celsius 1.79 0.16 3.42
7d_15C Seven days - 15 degrees Celsius 0.45 0.00 1.09
7d_30C Seven days - 30 degrees Celsius 1.14 0.00 2.30

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.335045 no
3d_25C 7d_25C 0.423099 no
3d_25C 7d_15C 1.000000 no
3d_25C 7d_30C 0.174937 no
3d_25C 10d_25C 0.058466 no
5d_25C 7d_25C 0.923556 no
5d_25C 7d_15C 0.410168 no
5d_25C 7d_30C 0.754126 no
5d_25C 10d_25C 0.244062 no
7d_25C 7d_15C 0.493061 no
7d_25C 7d_30C 0.654499 no
7d_25C 10d_25C 0.191363 no
7d_15C 7d_30C 0.217893 no
7d_15C 10d_25C 0.072166 no
7d_30C 10d_25C 0.469284 no

Orthologs

Orthofinder run ID2
Orthogroup8822
Change Orthofinder run
Species Protein ID
Penicillium roqueforti DTO002I6 Pro_DTO002I6_2|g9635.t1
Penicillium roqueforti DTO003C3 Pro_DTO003C3_2|g2627.t1
Penicillium roqueforti DTO003H1 (CBS 147308) Pro_DTO003H1_2|g3201.t1
Penicillium roqueforti DTO006G1 Pro_DTO006G1_2|g7666.t1
Penicillium roqueforti DTO006G7 Pro_DTO006G7_3|g4479.t1
Penicillium roqueforti DTO012A1 Pro_DTO012A1_2|g7072.t1
Penicillium roqueforti DTO012A2 (CBS 147309) Pro_DTO012A2_2|g3503.t1
Penicillium roqueforti DTO012A6 (CBS 147310) Pro_DTO012A6_2|g3921.t1
Penicillium roqueforti DTO012A7 Pro_DTO012A7_2|g346.t1
Penicillium roqueforti DTO012A8 Pro_DTO012A8_2|g7858.t1
Penicillium roqueforti DTO012A9 Pro_DTO012A9_2|g5380.t1
Penicillium roqueforti DTO013E5 Pro_DTO013E5_2|g2776.t1
Penicillium roqueforti DTO013F2 Pro_DTO013F2_2|g5611.t1
Penicillium roqueforti DTO013F5 (CBS 147311) Pro_DTO013F5_2|g2878.t1
Penicillium roqueforti DTO027I6 Pro_DTO027I6_2|g2348.t1
Penicillium roqueforti DTO032C6 Pro_DTO032C6_2|g4744.t1
Penicillium roqueforti DTO039G3 Pro_DTO039G3_2|g1971.t1
Penicillium roqueforti DTO046C5 Pro_DTO046C5_2|g1450.t1
Penicillium roqueforti DTO070G2 (CBS 147317) Pro_DTO070G2_2|g6773.t1
Penicillium roqueforti DTO081F9 (CBS 147318) Pro_DTO081F9_2|g3118.t1
Penicillium roqueforti DTO101D6 (CBS 147325) Pro_DTO101D6_2|g6096.t1
Penicillium roqueforti DTO102I9 (CBS 147326) Pro_DTO102I9_2|g3524.t1
Penicillium roqueforti DTO126G2 (CBS 147330) Pro_DTO126G2_2|g5822.t1
Penicillium roqueforti DTO127F7 (CBS 147331) Pro_DTO127F7_2|g4272.t1
Penicillium roqueforti DTO127F9 (CBS 147332) Pro_DTO127F9_2|g5922.t1
Penicillium roqueforti DTO130C1 (CBS 147333) Pro_DTO130C1_2|g7307.t1
Penicillium roqueforti DTO163C3 (CBS 147337) Pro_DTO163C3_2|g5047.t1
Penicillium roqueforti DTO163F5 (CBS 147338) Pro_DTO163F5_2|g1351.t1
Penicillium roqueforti DTO163G4 (CBS 147339) Pro_DTO163G4_2|g5301.t1
Penicillium roqueforti DTO265D5 (CBS 147372) Pro_DTO265D5_2|g6168.t1
Penicillium roqueforti DTO369A1 (CBS 147354) Pro_DTO369A1_2|g3879.t1
Penicillium roqueforti DTO375B1 (CBS 147355) Pro_DTO375B1_2|g6687.t1
Penicillium roqueforti DTO377G2 (LCP 96.3914a) Pro_DTO377G2_2|g3437.t1
Penicillium roqueforti LCP96 04111 Pro_DTO377G3_2|g4562.t1 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4562.t1
MSYTPEELNRIAIAGRISSVLSILGSFTIIGAFALSRHFRSPIHRIIFFNAFYNLFDSVATMISTSGPAAGDTSS
LCQFQGFALQMFPVADVLWTFAMALDTYLVVFYHFDTLSLRKLEVKYISVITALSFIPAFVFLFIRGHEKGPIYG
DETIWCSVARSWMILRIIFYYAPVWLIIVIVLILYSLIGIEITRVRDEFKLSEDDHIALTSNNSASSITTSADAN
SRRKTGLTPESTITSDITEQNTFQRPPPSRNASTTYQTPKQRRVSLRQYVIMPSLFFLAMLATWIAPTINRIAEF
AHHEHGSYSLLLSGGSDELRRGGWLLDRIEIFVGDMDLMMPSFCMFK*
Coding >Pro_DTO377G3_2|g4562.t1
ATGTCGTACACTCCCGAGGAGCTCAACCGGATTGCCATTGCAGGGCGAATCTCTTCAGTGCTCTCTATTCTGGGC
TCATTCACAATAATCGGCGCCTTTGCTCTCTCGCGACACTTCCGGAGCCCTATTCATCGTATAATATTTTTCAAT
GCCTTTTATAATCTGTTCGACTCTGTCGCCACCATGATATCCACTAGTGGACCTGCAGCTGGGGATACTTCGTCG
CTATGCCAATTCCAAGGCTTCGCGCTGCAGATGTTTCCAGTAGCCGACGTGCTCTGGACATTCGCAATGGCCTTG
GATACATACTTGGTTGTCTTCTATCATTTTGATACTCTGTCTTTGCGCAAGCTCGAAGTCAAATACATTAGTGTT
ATCACTGCTCTCTCCTTCATACCTGCCTTTGTCTTTCTCTTCATCCGCGGTCATGAGAAAGGTCCTATATATGGC
GACGAAACCATCTGGTGCTCAGTAGCTCGCAGTTGGATGATCCTGCGCATAATCTTCTACTATGCACCCGTATGG
CTGATAATAGTAATCGTCCTAATACTGTACTCTCTCATCGGTATCGAGATAACCAGAGTGCGCGACGAGTTCAAA
TTGAGCGAGGACGATCACATCGCTCTGACCTCTAACAACTCCGCTAGCAGCATCACGACAAGCGCGGATGCGAAT
TCCCGGAGAAAAACTGGGTTGACCCCAGAATCTACCATAACAAGCGATATCACGGAACAAAATACGTTCCAGCGT
CCGCCTCCATCCAGAAACGCCTCGACTACTTATCAAACCCCGAAACAGAGACGTGTGTCGCTGAGGCAGTATGTG
ATCATGCCATCGCTTTTCTTCCTAGCGATGCTAGCAACGTGGATTGCACCGACCATCAACCGTATCGCGGAATTC
GCGCATCATGAGCATGGATCTTACTCGCTTCTGCTCTCCGGTGGAAGCGACGAGCTTCGGAGAGGAGGATGGCTC
TTAGACAGAATAGAAATCTTCGTGGGTGACATGGATCTCATGATGCCATCGTTCTGCATGTTCAAATGA
Transcript >Pro_DTO377G3_2|g4562.t1
ATGTCGTACACTCCCGAGGAGCTCAACCGGATTGCCATTGCAGGGCGAATCTCTTCAGTGCTCTCTATTCTGGGC
TCATTCACAATAATCGGCGCCTTTGCTCTCTCGCGACACTTCCGGAGCCCTATTCATCGTATAATATTTTTCAAT
GCCTTTTATAATCTGTTCGACTCTGTCGCCACCATGATATCCACTAGTGGACCTGCAGCTGGGGATACTTCGTCG
CTATGCCAATTCCAAGGCTTCGCGCTGCAGATGTTTCCAGTAGCCGACGTGCTCTGGACATTCGCAATGGCCTTG
GATACATACTTGGTTGTCTTCTATCATTTTGATACTCTGTCTTTGCGCAAGCTCGAAGTCAAATACATTAGTGTT
ATCACTGCTCTCTCCTTCATACCTGCCTTTGTCTTTCTCTTCATCCGCGGTCATGAGAAAGGTCCTATATATGGC
GACGAAACCATCTGGTGCTCAGTAGCTCGCAGTTGGATGATCCTGCGCATAATCTTCTACTATGCACCCGTATGG
CTGATAATAGTAATCGTCCTAATACTGTACTCTCTCATCGGTATCGAGATAACCAGAGTGCGCGACGAGTTCAAA
TTGAGCGAGGACGATCACATCGCTCTGACCTCTAACAACTCCGCTAGCAGCATCACGACAAGCGCGGATGCGAAT
TCCCGGAGAAAAACTGGGTTGACCCCAGAATCTACCATAACAAGCGATATCACGGAACAAAATACGTTCCAGCGT
CCGCCTCCATCCAGAAACGCCTCGACTACTTATCAAACCCCGAAACAGAGACGTGTGTCGCTGAGGCAGTATGTG
ATCATGCCATCGCTTTTCTTCCTAGCGATGCTAGCAACGTGGATTGCACCGACCATCAACCGTATCGCGGAATTC
GCGCATCATGAGCATGGATCTTACTCGCTTCTGCTCTCCGGTGGAAGCGACGAGCTTCGGAGAGGAGGATGGCTC
TTAGACAGAATAGAAATCTTCGTGGGTGACATGGATCTCATGATGCCATCGTTCTGCATGTTCAAATGA
Gene >Pro_DTO377G3_2|g4562.t1
ATGTCGTACACTCCCGAGGAGCTCAACCGGATTGCCATTGCAGGGCGAATCTCTTCAGTGCTCTCTATTCTGGGC
TCATTCACAATAATCGGCGCCTTTGCTCTCTCGCGACACTTCCGGAGCCCTATTCATCGTATAATATTTTTCAAT
GCCTTTTATAATCTGTTCGACTCTGTCGCCACCATGATATCCACTAGTGGACCTGCAGCTGGGGATACTTCGTCG
CTATGCCAATTCCAAGGCTTCGCGCTGCAGATGTATGTGGCATTGACAGAGATTTGTCGAGGCAATTTGGTTCGC
AAAGACATTCTAACCCCAAAAATATAGGTTTCCAGTAGCCGACGTGCTCTGGACATTCGCAATGGCCTTGGATAC
ATACTTGGTTGTCTTCTATCATTTTGATACTCTGTCTTTGCGCAAGCTCGAAGTCAAATACATTAGTGTTATCAC
TGCTCTCTCCTTCATACCTGCCTTTGTCTTTCTCTTCATCCGCGGTCATGAGAAAGGTCCTATATATGGCGACGA
AACCGTGAGTACCAATCGACTTGAAGCTAAACATTGAGGCTGAAAACTTCTATAGATCTGGTGCTCAGTAGCTCG
CAGTTGGATGATCCTGCGCATAATCTTCTACTATGCACCCGTATGGTACGCATACTTCCATTCGCCCGCCCAAGC
ACTCTTCTAATAGTTCCACAACAGGCTGATAATAGTAATCGTCCTAATACTGTACTCTCTCATCGGTATCGAGAT
AACCAGAGTGCGCGACGAGTTCAAATTGAGCGAGGACGATCACATCGCTCTGACCTCTAACAACTCCGCTAGCAG
CATCACGACAAGCGCGGATGCGAATTCCCGGAGAAAAACTGGGTTGACCCCAGAATCTACCATAACAAGCGATAT
CACGGAACAAAATACGTTCCAGCGTCCGCCTCCATCCAGAAACGCCTCGACTACTTATCAAACCCCGAAACAGAG
ACGTGTGTCGCTGAGGCAGTATGTGATCATGCCATCGCTTTTCTTCCTAGCGATGCTAGCAACGTGGATTGCACC
GACCATCAACCGTATCGCGGAATTCGCGCATCATGAGCATGGATCTTACTCGCTTCTGCTCTCCGTGAGTACGTT
GGGGTCCCTGCGTGGCTTTTGGAATGGTGTTATTTTCATCACTATCGGTATGAAAGGGTGGAAGCGACGAGCTTC
GGAGAGGAGGATGGCTCTTAGACAGGTAAGATTGTCTTTTTCTATCTCCACCTCAGTTGAGTAGCTGCTGACTTT
ACGATATTATAGAATAGAAATCTTCGTGGGTGACATGGATCTCATGATGCCATCGTTCTGCATGTTCAAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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