© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4550.t1 |
| Gene name | |
| Location | scaffold_09:528118..529635 |
| Strand | + |
| Gene length (bp) | 1517 |
| Transcript length (bp) | 1410 |
| Coding sequence length (bp) | 1410 |
| Protein length (aa) | 470 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06068 | TIP49 | TIP49 P-loop domain | 3.5E-153 | 20 | 361 |
| PF17856 | TIP49_C | TIP49 AAA-lid domain | 1.2E-20 | 368 | 433 |
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 1.2E-05 | 72 | 122 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0005488 | binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 147.96 | 90.49 | 205.42 |
| 5d_25C | Five days - 25 degrees Celsius | 142.08 | 86.65 | 197.51 |
| 7d_25C | Seven days - 25 degrees Celsius | 150.01 | 91.62 | 208.40 |
| 10d_25C | Ten days - 25 degrees Celsius | 174.45 | 105.65 | 243.25 |
| 7d_15C | Seven days - 15 degrees Celsius | 121.93 | 74.94 | 168.92 |
| 7d_30C | Seven days - 30 degrees Celsius | 140.67 | 85.92 | 195.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.904691 | no |
| 3d_25C | 7d_25C | 0.968748 | no |
| 3d_25C | 7d_15C | 0.429758 | no |
| 3d_25C | 7d_30C | 0.877126 | no |
| 3d_25C | 10d_25C | 0.518030 | no |
| 5d_25C | 7d_25C | 0.864392 | no |
| 5d_25C | 7d_15C | 0.556150 | no |
| 5d_25C | 7d_30C | 0.978103 | no |
| 5d_25C | 10d_25C | 0.395211 | no |
| 7d_25C | 7d_15C | 0.389976 | no |
| 7d_25C | 7d_30C | 0.837933 | no |
| 7d_25C | 10d_25C | 0.559908 | no |
| 7d_15C | 7d_30C | 0.591367 | no |
| 7d_15C | 10d_25C | 0.090191 | no |
| 7d_30C | 10d_25C | 0.372227 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 8833 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4550.t1 MAVPISTVAESKELRGLNLIAAHSHIRGLGVDADTLQPRASSQGLVGQEKARKAAAVILQMVREGKIAGRAVLIA GPPSTGKTAIAMGMAQSLGPDVPFTMLAASEIFSMEMSKTEALTQAFRRSIGVRIKEESEIIEGEVVEIQIDRSV TGGNKQGKLTIKTTDMETIYDMGTKMIDSMTKERVMAGDVISIDKSSGKITKLGRSYARSRDYDAMGADTKFVQC PEGELQVRKEIVHTVSLHEIDVINSRSQGFLALFSGDTGEIRSEVRDQINTKVAEWKEEGKAEIIPGVLFIDEVH MLDIECYSYINRALEAELAPIVIMASNRGQARIRGTTYTSPHGLPLDFLDRVVIVSTHMYSGDEIRQILAIRAQE EEIDLSPDALALLTKIGQESNLRYASNIITTSHLLSQKRKAKEVSVDDVQRSFRLFYDPARSVKFVNQYEQRFIG DQGTVSFTAATNGDAMELS* |
| Coding | >Pro_DTO377G3_2|g4550.t1 ATGGCTGTGCCAATCTCGACTGTCGCAGAGAGCAAGGAGCTCCGGGGACTGAACCTCATCGCCGCCCATTCGCAT ATCAGAGGCCTTGGTGTCGATGCAGACACTCTTCAACCTCGGGCATCATCCCAAGGCCTTGTGGGTCAGGAAAAG GCCCGGAAGGCTGCTGCGGTGATTCTGCAGATGGTGAGGGAAGGCAAGATTGCCGGTCGCGCTGTTCTGATCGCA GGACCTCCTAGCACCGGAAAGACAGCAATTGCAATGGGCATGGCACAATCTCTCGGGCCGGACGTACCTTTCACC ATGCTTGCTGCTTCTGAAATCTTCTCAATGGAGATGTCGAAGACAGAAGCCCTGACCCAGGCATTCCGGAGGTCC ATCGGTGTGCGCATTAAGGAAGAGAGCGAAATCATTGAAGGTGAAGTTGTGGAGATTCAAATTGACCGGAGTGTT ACTGGCGGCAATAAACAAGGAAAGCTCACGATCAAGACTACGGACATGGAAACGATTTACGACATGGGAACCAAG ATGATTGATTCTATGACAAAGGAACGAGTAATGGCAGGAGATGTAATCTCGATCGACAAGTCCTCAGGCAAGATC ACCAAGCTCGGTCGCTCATACGCACGCTCTCGAGACTACGACGCCATGGGCGCCGATACCAAGTTTGTCCAATGC CCCGAAGGCGAACTCCAGGTTCGCAAGGAGATCGTCCACACCGTCAGCCTCCACGAGATCGACGTCATTAACTCG CGTTCACAAGGCTTCCTGGCTCTCTTCTCCGGCGATACGGGCGAGATTCGGAGTGAAGTTCGGGACCAGATCAAT ACCAAGGTGGCTGAATGGAAGGAAGAGGGTAAGGCAGAGATTATTCCTGGTGTTCTGTTCATTGACGAGGTTCAC ATGCTTGATATCGAGTGTTACTCCTACATCAATCGTGCCCTTGAGGCTGAGTTGGCCCCTATCGTCATCATGGCT AGCAATCGCGGCCAGGCACGCATCCGCGGAACCACCTATACCTCTCCTCACGGTCTACCCCTTGACTTCCTCGAT CGGGTTGTTATCGTCAGCACACATATGTACTCTGGTGACGAGATCCGTCAAATCCTCGCCATCCGAGCGCAGGAA GAAGAGATTGATCTTTCGCCTGATGCTCTCGCCCTTCTCACCAAGATTGGTCAGGAGTCAAATCTGCGTTATGCC AGCAACATTATTACTACTTCGCATCTCTTGAGTCAAAAACGCAAGGCGAAGGAGGTCAGTGTTGATGACGTCCAA CGCAGCTTCCGGTTGTTCTACGACCCTGCTCGGAGTGTGAAGTTCGTCAATCAATATGAGCAGCGCTTCATCGGT GACCAAGGTACCGTTAGCTTCACTGCTGCTACCAATGGCGACGCCATGGAGCTTTCTTAA |
| Transcript | >Pro_DTO377G3_2|g4550.t1 ATGGCTGTGCCAATCTCGACTGTCGCAGAGAGCAAGGAGCTCCGGGGACTGAACCTCATCGCCGCCCATTCGCAT ATCAGAGGCCTTGGTGTCGATGCAGACACTCTTCAACCTCGGGCATCATCCCAAGGCCTTGTGGGTCAGGAAAAG GCCCGGAAGGCTGCTGCGGTGATTCTGCAGATGGTGAGGGAAGGCAAGATTGCCGGTCGCGCTGTTCTGATCGCA GGACCTCCTAGCACCGGAAAGACAGCAATTGCAATGGGCATGGCACAATCTCTCGGGCCGGACGTACCTTTCACC ATGCTTGCTGCTTCTGAAATCTTCTCAATGGAGATGTCGAAGACAGAAGCCCTGACCCAGGCATTCCGGAGGTCC ATCGGTGTGCGCATTAAGGAAGAGAGCGAAATCATTGAAGGTGAAGTTGTGGAGATTCAAATTGACCGGAGTGTT ACTGGCGGCAATAAACAAGGAAAGCTCACGATCAAGACTACGGACATGGAAACGATTTACGACATGGGAACCAAG ATGATTGATTCTATGACAAAGGAACGAGTAATGGCAGGAGATGTAATCTCGATCGACAAGTCCTCAGGCAAGATC ACCAAGCTCGGTCGCTCATACGCACGCTCTCGAGACTACGACGCCATGGGCGCCGATACCAAGTTTGTCCAATGC CCCGAAGGCGAACTCCAGGTTCGCAAGGAGATCGTCCACACCGTCAGCCTCCACGAGATCGACGTCATTAACTCG CGTTCACAAGGCTTCCTGGCTCTCTTCTCCGGCGATACGGGCGAGATTCGGAGTGAAGTTCGGGACCAGATCAAT ACCAAGGTGGCTGAATGGAAGGAAGAGGGTAAGGCAGAGATTATTCCTGGTGTTCTGTTCATTGACGAGGTTCAC ATGCTTGATATCGAGTGTTACTCCTACATCAATCGTGCCCTTGAGGCTGAGTTGGCCCCTATCGTCATCATGGCT AGCAATCGCGGCCAGGCACGCATCCGCGGAACCACCTATACCTCTCCTCACGGTCTACCCCTTGACTTCCTCGAT CGGGTTGTTATCGTCAGCACACATATGTACTCTGGTGACGAGATCCGTCAAATCCTCGCCATCCGAGCGCAGGAA GAAGAGATTGATCTTTCGCCTGATGCTCTCGCCCTTCTCACCAAGATTGGTCAGGAGTCAAATCTGCGTTATGCC AGCAACATTATTACTACTTCGCATCTCTTGAGTCAAAAACGCAAGGCGAAGGAGGTCAGTGTTGATGACGTCCAA CGCAGCTTCCGGTTGTTCTACGACCCTGCTCGGAGTGTGAAGTTCGTCAATCAATATGAGCAGCGCTTCATCGGT GACCAAGGTACCGTTAGCTTCACTGCTGCTACCAATGGCGACGCCATGGAGCTTTCTTAA |
| Gene | >Pro_DTO377G3_2|g4550.t1 ATGGCTGTGGTGAGTTACAATTCTTCTGTAATAACCTCACGGTTGCTGACACCAAAACAGCCAATCTCGACTGTC GCAGAGAGCAAGGAGCTCCGGGGACTGAACCTCATCGCCGCCCATTCGCATATCAGAGGCCTTGGTGTCGATGCA GACACTCTTCAACCTCGGGCATCATCCCAAGGCCTTGTGGGTCAGGAAAAGGCCCGGAAGGCTGCTGCGGTGATT CTGCAGATGGTGAGGGAAGGCAAGATTGCCGGTCGCGCTGTTCTGATCGCAGGACCTCCTAGCACCGGAAAGACA GCAATTGCAATGGGCATGGCACAATCTCTCGGGCCGGACGTACCTTTCACCATGCTTGCTGCTTCTGAAATCTTC TCAATGGAGATGTCGAAGACAGAAGCCCTGACCCAGGCATTCCGGAGGTCCATCGGTGTGCGCATTAAGGAAGAG AGCGAAATCATTGAAGGTGAAGTTGTGGAGATTCAAATTGACCGGAGTGTTACTGGCGTGAGTGGATTCTCTATG CAAACGAGTTCATAACATTGGATACTGACTACCTACAGGGCAATAAACAAGGAAAGCTCACGATCAAGACTACGG ACATGGAAACGATTTACGACATGGGAACCAAGATGATTGATTCTATGACAAAGGAACGAGTAATGGCAGGAGATG TAATCTCGATCGACAAGTCCTCAGGCAAGATCACCAAGCTCGGTCGCTCATACGCACGCTCTCGAGACTACGACG CCATGGGCGCCGATACCAAGTTTGTCCAATGCCCCGAAGGCGAACTCCAGGTTCGCAAGGAGATCGTCCACACCG TCAGCCTCCACGAGATCGACGTCATTAACTCGCGTTCACAAGGCTTCCTGGCTCTCTTCTCCGGCGATACGGGCG AGATTCGGAGTGAAGTTCGGGACCAGATCAATACCAAGGTGGCTGAATGGAAGGAAGAGGGTAAGGCAGAGATTA TTCCTGGTGTTCTGTTCATTGACGAGGTTCACATGCTTGATATCGAGTGTTACTCCTACATCAATCGTGCCCTTG AGGCTGAGTTGGCCCCTATCGTCATCATGGCTAGCAATCGCGGCCAGGCACGCATCCGCGGAACCACCTATACCT CTCCTCACGGTCTACCCCTTGACTTCCTCGATCGGGTTGTTATCGTCAGCACACATATGTACTCTGGTGACGAGA TCCGTCAAATCCTCGCCATCCGAGCGCAGGAAGAAGAGATTGATCTTTCGCCTGATGCTCTCGCCCTTCTCACCA AGATTGGTCAGGAGTCAAATCTGCGTTATGCCAGCAACATTATTACTACTTCGCATCTCTTGAGTCAAAAACGCA AGGCGAAGGAGGTCAGTGTTGATGACGTCCAACGCAGCTTCCGGTTGTTCTACGACCCTGCTCGGAGTGTGAAGT TCGTCAATCAATATGAGCAGCGCTTCATCGGTGACCAAGGTACCGTTAGCTTCACTGCTGCTACCAATGGCGACG CCATGGAGCTTTCTTAA |