Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4550.t1
Gene name
Locationscaffold_09:528118..529635
Strand+
Gene length (bp)1517
Transcript length (bp)1410
Coding sequence length (bp)1410
Protein length (aa) 470

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06068 TIP49 TIP49 P-loop domain 3.2E-153 20 361
PF17856 TIP49_C TIP49 AAA-lid domain 1.1E-20 368 433
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-05 72 122
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 8.3E-05 43 100
PF03796 DnaB_C DnaB-like helicase C terminal domain 6.6E-06 65 178

GO

GO Term Description Terminal node
GO:0003678 DNA helicase activity Yes
GO:0006310 DNA recombination Yes
GO:0006260 DNA replication Yes
GO:0006281 DNA repair Yes
GO:0009378 four-way junction helicase activity Yes
GO:0005524 ATP binding Yes
GO:0009987 cellular process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0043168 anion binding No
GO:0004386 helicase activity No
GO:0032559 adenyl ribonucleotide binding No
GO:0044238 primary metabolic process No
GO:0003824 catalytic activity No
GO:0006950 response to stress No
GO:0033554 cellular response to stress No
GO:0044260 cellular macromolecule metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0044237 cellular metabolic process No
GO:0032553 ribonucleotide binding No
GO:0071704 organic substance metabolic process No
GO:0016462 pyrophosphatase activity No
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides No
GO:0097159 organic cyclic compound binding No
GO:0032555 purine ribonucleotide binding No
GO:0036094 small molecule binding No
GO:1901363 heterocyclic compound binding No
GO:0090304 nucleic acid metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0034645 cellular macromolecule biosynthetic process No
GO:0008150 biological_process No
GO:0005488 binding No
GO:0006259 DNA metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0009058 biosynthetic process No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0043167 ion binding No
GO:0006807 nitrogen compound metabolic process No
GO:0000166 nucleotide binding No
GO:0003674 molecular_function No
GO:0008144 drug binding No
GO:0051716 cellular response to stimulus No
GO:0016817 hydrolase activity, acting on acid anhydrides No
GO:0050896 response to stimulus No
GO:0140097 catalytic activity, acting on DNA No
GO:1901576 organic substance biosynthetic process No
GO:0016787 hydrolase activity No
GO:0008152 metabolic process No
GO:0044249 cellular biosynthetic process No
GO:0009059 macromolecule biosynthetic process No
GO:0030554 adenyl nucleotide binding No
GO:0097367 carbohydrate derivative binding No
GO:0017076 purine nucleotide binding No
GO:1901265 nucleoside phosphate binding No
GO:0017111 nucleoside-triphosphatase activity No
GO:0006974 cellular response to DNA damage stimulus No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 34 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4550.t1
MAVPISTVAESKELRGLNLIAAHSHIRGLGVDADTLQPRASSQGLVGQEKARKAAAVILQMVREGKIAGRAVLIA
GPPSTGKTAIAMGMAQSLGPDVPFTMLAASEIFSMEMSKTEALTQAFRRSIGVRIKEESEIIEGEVVEIQIDRSV
TGGNKQGKLTIKTTDMETIYDMGTKMIDSMTKERVMAGDVISIDKSSGKITKLGRSYARSRDYDAMGADTKFVQC
PEGELQVRKEIVHTVSLHEIDVINSRSQGFLALFSGDTGEIRSEVRDQINTKVAEWKEEGKAEIIPGVLFIDEVH
MLDIECYSYINRALEAELAPIVIMASNRGQARIRGTTYTSPHGLPLDFLDRVVIVSTHMYSGDEIRQILAIRAQE
EEIDLSPDALALLTKIGQESNLRYASNIITTSHLLSQKRKAKEVSVDDVQRSFRLFYDPARSVKFVNQYEQRFIG
DQGTVSFTAATNGDAMELS*
Coding >Pro_DTO377G3_2|g4550.t1
ATGGCTGTGCCAATCTCGACTGTCGCAGAGAGCAAGGAGCTCCGGGGACTGAACCTCATCGCCGCCCATTCGCAT
ATCAGAGGCCTTGGTGTCGATGCAGACACTCTTCAACCTCGGGCATCATCCCAAGGCCTTGTGGGTCAGGAAAAG
GCCCGGAAGGCTGCTGCGGTGATTCTGCAGATGGTGAGGGAAGGCAAGATTGCCGGTCGCGCTGTTCTGATCGCA
GGACCTCCTAGCACCGGAAAGACAGCAATTGCAATGGGCATGGCACAATCTCTCGGGCCGGACGTACCTTTCACC
ATGCTTGCTGCTTCTGAAATCTTCTCAATGGAGATGTCGAAGACAGAAGCCCTGACCCAGGCATTCCGGAGGTCC
ATCGGTGTGCGCATTAAGGAAGAGAGCGAAATCATTGAAGGTGAAGTTGTGGAGATTCAAATTGACCGGAGTGTT
ACTGGCGGCAATAAACAAGGAAAGCTCACGATCAAGACTACGGACATGGAAACGATTTACGACATGGGAACCAAG
ATGATTGATTCTATGACAAAGGAACGAGTAATGGCAGGAGATGTAATCTCGATCGACAAGTCCTCAGGCAAGATC
ACCAAGCTCGGTCGCTCATACGCACGCTCTCGAGACTACGACGCCATGGGCGCCGATACCAAGTTTGTCCAATGC
CCCGAAGGCGAACTCCAGGTTCGCAAGGAGATCGTCCACACCGTCAGCCTCCACGAGATCGACGTCATTAACTCG
CGTTCACAAGGCTTCCTGGCTCTCTTCTCCGGCGATACGGGCGAGATTCGGAGTGAAGTTCGGGACCAGATCAAT
ACCAAGGTGGCTGAATGGAAGGAAGAGGGTAAGGCAGAGATTATTCCTGGTGTTCTGTTCATTGACGAGGTTCAC
ATGCTTGATATCGAGTGTTACTCCTACATCAATCGTGCCCTTGAGGCTGAGTTGGCCCCTATCGTCATCATGGCT
AGCAATCGCGGCCAGGCACGCATCCGCGGAACCACCTATACCTCTCCTCACGGTCTACCCCTTGACTTCCTCGAT
CGGGTTGTTATCGTCAGCACACATATGTACTCTGGTGACGAGATCCGTCAAATCCTCGCCATCCGAGCGCAGGAA
GAAGAGATTGATCTTTCGCCTGATGCTCTCGCCCTTCTCACCAAGATTGGTCAGGAGTCAAATCTGCGTTATGCC
AGCAACATTATTACTACTTCGCATCTCTTGAGTCAAAAACGCAAGGCGAAGGAGGTCAGTGTTGATGACGTCCAA
CGCAGCTTCCGGTTGTTCTACGACCCTGCTCGGAGTGTGAAGTTCGTCAATCAATATGAGCAGCGCTTCATCGGT
GACCAAGGTACCGTTAGCTTCACTGCTGCTACCAATGGCGACGCCATGGAGCTTTCTTAA
Transcript >Pro_DTO377G3_2|g4550.t1
ATGGCTGTGCCAATCTCGACTGTCGCAGAGAGCAAGGAGCTCCGGGGACTGAACCTCATCGCCGCCCATTCGCAT
ATCAGAGGCCTTGGTGTCGATGCAGACACTCTTCAACCTCGGGCATCATCCCAAGGCCTTGTGGGTCAGGAAAAG
GCCCGGAAGGCTGCTGCGGTGATTCTGCAGATGGTGAGGGAAGGCAAGATTGCCGGTCGCGCTGTTCTGATCGCA
GGACCTCCTAGCACCGGAAAGACAGCAATTGCAATGGGCATGGCACAATCTCTCGGGCCGGACGTACCTTTCACC
ATGCTTGCTGCTTCTGAAATCTTCTCAATGGAGATGTCGAAGACAGAAGCCCTGACCCAGGCATTCCGGAGGTCC
ATCGGTGTGCGCATTAAGGAAGAGAGCGAAATCATTGAAGGTGAAGTTGTGGAGATTCAAATTGACCGGAGTGTT
ACTGGCGGCAATAAACAAGGAAAGCTCACGATCAAGACTACGGACATGGAAACGATTTACGACATGGGAACCAAG
ATGATTGATTCTATGACAAAGGAACGAGTAATGGCAGGAGATGTAATCTCGATCGACAAGTCCTCAGGCAAGATC
ACCAAGCTCGGTCGCTCATACGCACGCTCTCGAGACTACGACGCCATGGGCGCCGATACCAAGTTTGTCCAATGC
CCCGAAGGCGAACTCCAGGTTCGCAAGGAGATCGTCCACACCGTCAGCCTCCACGAGATCGACGTCATTAACTCG
CGTTCACAAGGCTTCCTGGCTCTCTTCTCCGGCGATACGGGCGAGATTCGGAGTGAAGTTCGGGACCAGATCAAT
ACCAAGGTGGCTGAATGGAAGGAAGAGGGTAAGGCAGAGATTATTCCTGGTGTTCTGTTCATTGACGAGGTTCAC
ATGCTTGATATCGAGTGTTACTCCTACATCAATCGTGCCCTTGAGGCTGAGTTGGCCCCTATCGTCATCATGGCT
AGCAATCGCGGCCAGGCACGCATCCGCGGAACCACCTATACCTCTCCTCACGGTCTACCCCTTGACTTCCTCGAT
CGGGTTGTTATCGTCAGCACACATATGTACTCTGGTGACGAGATCCGTCAAATCCTCGCCATCCGAGCGCAGGAA
GAAGAGATTGATCTTTCGCCTGATGCTCTCGCCCTTCTCACCAAGATTGGTCAGGAGTCAAATCTGCGTTATGCC
AGCAACATTATTACTACTTCGCATCTCTTGAGTCAAAAACGCAAGGCGAAGGAGGTCAGTGTTGATGACGTCCAA
CGCAGCTTCCGGTTGTTCTACGACCCTGCTCGGAGTGTGAAGTTCGTCAATCAATATGAGCAGCGCTTCATCGGT
GACCAAGGTACCGTTAGCTTCACTGCTGCTACCAATGGCGACGCCATGGAGCTTTCTTAA
Gene >Pro_DTO377G3_2|g4550.t1
ATGGCTGTGGTGAGTTACAATTCTTCTGTAATAACCTCACGGTTGCTGACACCAAAACAGCCAATCTCGACTGTC
GCAGAGAGCAAGGAGCTCCGGGGACTGAACCTCATCGCCGCCCATTCGCATATCAGAGGCCTTGGTGTCGATGCA
GACACTCTTCAACCTCGGGCATCATCCCAAGGCCTTGTGGGTCAGGAAAAGGCCCGGAAGGCTGCTGCGGTGATT
CTGCAGATGGTGAGGGAAGGCAAGATTGCCGGTCGCGCTGTTCTGATCGCAGGACCTCCTAGCACCGGAAAGACA
GCAATTGCAATGGGCATGGCACAATCTCTCGGGCCGGACGTACCTTTCACCATGCTTGCTGCTTCTGAAATCTTC
TCAATGGAGATGTCGAAGACAGAAGCCCTGACCCAGGCATTCCGGAGGTCCATCGGTGTGCGCATTAAGGAAGAG
AGCGAAATCATTGAAGGTGAAGTTGTGGAGATTCAAATTGACCGGAGTGTTACTGGCGTGAGTGGATTCTCTATG
CAAACGAGTTCATAACATTGGATACTGACTACCTACAGGGCAATAAACAAGGAAAGCTCACGATCAAGACTACGG
ACATGGAAACGATTTACGACATGGGAACCAAGATGATTGATTCTATGACAAAGGAACGAGTAATGGCAGGAGATG
TAATCTCGATCGACAAGTCCTCAGGCAAGATCACCAAGCTCGGTCGCTCATACGCACGCTCTCGAGACTACGACG
CCATGGGCGCCGATACCAAGTTTGTCCAATGCCCCGAAGGCGAACTCCAGGTTCGCAAGGAGATCGTCCACACCG
TCAGCCTCCACGAGATCGACGTCATTAACTCGCGTTCACAAGGCTTCCTGGCTCTCTTCTCCGGCGATACGGGCG
AGATTCGGAGTGAAGTTCGGGACCAGATCAATACCAAGGTGGCTGAATGGAAGGAAGAGGGTAAGGCAGAGATTA
TTCCTGGTGTTCTGTTCATTGACGAGGTTCACATGCTTGATATCGAGTGTTACTCCTACATCAATCGTGCCCTTG
AGGCTGAGTTGGCCCCTATCGTCATCATGGCTAGCAATCGCGGCCAGGCACGCATCCGCGGAACCACCTATACCT
CTCCTCACGGTCTACCCCTTGACTTCCTCGATCGGGTTGTTATCGTCAGCACACATATGTACTCTGGTGACGAGA
TCCGTCAAATCCTCGCCATCCGAGCGCAGGAAGAAGAGATTGATCTTTCGCCTGATGCTCTCGCCCTTCTCACCA
AGATTGGTCAGGAGTCAAATCTGCGTTATGCCAGCAACATTATTACTACTTCGCATCTCTTGAGTCAAAAACGCA
AGGCGAAGGAGGTCAGTGTTGATGACGTCCAACGCAGCTTCCGGTTGTTCTACGACCCTGCTCGGAGTGTGAAGT
TCGTCAATCAATATGAGCAGCGCTTCATCGGTGACCAAGGTACCGTTAGCTTCACTGCTGCTACCAATGGCGACG
CCATGGAGCTTTCTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail