Protein ID | Pro_DTO377G3_2|g4550.t1 |
Gene name | |
Location | scaffold_09:528118..529635 |
Strand | + |
Gene length (bp) | 1517 |
Transcript length (bp) | 1410 |
Coding sequence length (bp) | 1410 |
Protein length (aa) | 470 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06068 | TIP49 | TIP49 P-loop domain | 3.2E-153 | 20 | 361 |
PF17856 | TIP49_C | TIP49 AAA-lid domain | 1.1E-20 | 368 | 433 |
PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 1.1E-05 | 72 | 122 |
PF05496 | RuvB_N | Holliday junction DNA helicase RuvB P-loop domain | 8.3E-05 | 43 | 100 |
PF03796 | DnaB_C | DnaB-like helicase C terminal domain | 6.6E-06 | 65 | 178 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003678 | DNA helicase activity | Yes |
GO:0006310 | DNA recombination | Yes |
GO:0006260 | DNA replication | Yes |
GO:0006281 | DNA repair | Yes |
GO:0009378 | four-way junction helicase activity | Yes |
GO:0005524 | ATP binding | Yes |
GO:0009987 | cellular process | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0043168 | anion binding | No |
GO:0004386 | helicase activity | No |
GO:0032559 | adenyl ribonucleotide binding | No |
GO:0044238 | primary metabolic process | No |
GO:0003824 | catalytic activity | No |
GO:0006950 | response to stress | No |
GO:0033554 | cellular response to stress | No |
GO:0044260 | cellular macromolecule metabolic process | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0032553 | ribonucleotide binding | No |
GO:0071704 | organic substance metabolic process | No |
GO:0016462 | pyrophosphatase activity | No |
GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0032555 | purine ribonucleotide binding | No |
GO:0036094 | small molecule binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0034645 | cellular macromolecule biosynthetic process | No |
GO:0008150 | biological_process | No |
GO:0005488 | binding | No |
GO:0006259 | DNA metabolic process | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0009058 | biosynthetic process | No |
GO:0035639 | purine ribonucleoside triphosphate binding | No |
GO:0043167 | ion binding | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0000166 | nucleotide binding | No |
GO:0003674 | molecular_function | No |
GO:0008144 | drug binding | No |
GO:0051716 | cellular response to stimulus | No |
GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
GO:0050896 | response to stimulus | No |
GO:0140097 | catalytic activity, acting on DNA | No |
GO:1901576 | organic substance biosynthetic process | No |
GO:0016787 | hydrolase activity | No |
GO:0008152 | metabolic process | No |
GO:0044249 | cellular biosynthetic process | No |
GO:0009059 | macromolecule biosynthetic process | No |
GO:0030554 | adenyl nucleotide binding | No |
GO:0097367 | carbohydrate derivative binding | No |
GO:0017076 | purine nucleotide binding | No |
GO:1901265 | nucleoside phosphate binding | No |
GO:0017111 | nucleoside-triphosphatase activity | No |
GO:0006974 | cellular response to DNA damage stimulus | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 34 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g4550.t1 MAVPISTVAESKELRGLNLIAAHSHIRGLGVDADTLQPRASSQGLVGQEKARKAAAVILQMVREGKIAGRAVLIA GPPSTGKTAIAMGMAQSLGPDVPFTMLAASEIFSMEMSKTEALTQAFRRSIGVRIKEESEIIEGEVVEIQIDRSV TGGNKQGKLTIKTTDMETIYDMGTKMIDSMTKERVMAGDVISIDKSSGKITKLGRSYARSRDYDAMGADTKFVQC PEGELQVRKEIVHTVSLHEIDVINSRSQGFLALFSGDTGEIRSEVRDQINTKVAEWKEEGKAEIIPGVLFIDEVH MLDIECYSYINRALEAELAPIVIMASNRGQARIRGTTYTSPHGLPLDFLDRVVIVSTHMYSGDEIRQILAIRAQE EEIDLSPDALALLTKIGQESNLRYASNIITTSHLLSQKRKAKEVSVDDVQRSFRLFYDPARSVKFVNQYEQRFIG DQGTVSFTAATNGDAMELS* |
Coding | >Pro_DTO377G3_2|g4550.t1 ATGGCTGTGCCAATCTCGACTGTCGCAGAGAGCAAGGAGCTCCGGGGACTGAACCTCATCGCCGCCCATTCGCAT ATCAGAGGCCTTGGTGTCGATGCAGACACTCTTCAACCTCGGGCATCATCCCAAGGCCTTGTGGGTCAGGAAAAG GCCCGGAAGGCTGCTGCGGTGATTCTGCAGATGGTGAGGGAAGGCAAGATTGCCGGTCGCGCTGTTCTGATCGCA GGACCTCCTAGCACCGGAAAGACAGCAATTGCAATGGGCATGGCACAATCTCTCGGGCCGGACGTACCTTTCACC ATGCTTGCTGCTTCTGAAATCTTCTCAATGGAGATGTCGAAGACAGAAGCCCTGACCCAGGCATTCCGGAGGTCC ATCGGTGTGCGCATTAAGGAAGAGAGCGAAATCATTGAAGGTGAAGTTGTGGAGATTCAAATTGACCGGAGTGTT ACTGGCGGCAATAAACAAGGAAAGCTCACGATCAAGACTACGGACATGGAAACGATTTACGACATGGGAACCAAG ATGATTGATTCTATGACAAAGGAACGAGTAATGGCAGGAGATGTAATCTCGATCGACAAGTCCTCAGGCAAGATC ACCAAGCTCGGTCGCTCATACGCACGCTCTCGAGACTACGACGCCATGGGCGCCGATACCAAGTTTGTCCAATGC CCCGAAGGCGAACTCCAGGTTCGCAAGGAGATCGTCCACACCGTCAGCCTCCACGAGATCGACGTCATTAACTCG CGTTCACAAGGCTTCCTGGCTCTCTTCTCCGGCGATACGGGCGAGATTCGGAGTGAAGTTCGGGACCAGATCAAT ACCAAGGTGGCTGAATGGAAGGAAGAGGGTAAGGCAGAGATTATTCCTGGTGTTCTGTTCATTGACGAGGTTCAC ATGCTTGATATCGAGTGTTACTCCTACATCAATCGTGCCCTTGAGGCTGAGTTGGCCCCTATCGTCATCATGGCT AGCAATCGCGGCCAGGCACGCATCCGCGGAACCACCTATACCTCTCCTCACGGTCTACCCCTTGACTTCCTCGAT CGGGTTGTTATCGTCAGCACACATATGTACTCTGGTGACGAGATCCGTCAAATCCTCGCCATCCGAGCGCAGGAA GAAGAGATTGATCTTTCGCCTGATGCTCTCGCCCTTCTCACCAAGATTGGTCAGGAGTCAAATCTGCGTTATGCC AGCAACATTATTACTACTTCGCATCTCTTGAGTCAAAAACGCAAGGCGAAGGAGGTCAGTGTTGATGACGTCCAA CGCAGCTTCCGGTTGTTCTACGACCCTGCTCGGAGTGTGAAGTTCGTCAATCAATATGAGCAGCGCTTCATCGGT GACCAAGGTACCGTTAGCTTCACTGCTGCTACCAATGGCGACGCCATGGAGCTTTCTTAA |
Transcript | >Pro_DTO377G3_2|g4550.t1 ATGGCTGTGCCAATCTCGACTGTCGCAGAGAGCAAGGAGCTCCGGGGACTGAACCTCATCGCCGCCCATTCGCAT ATCAGAGGCCTTGGTGTCGATGCAGACACTCTTCAACCTCGGGCATCATCCCAAGGCCTTGTGGGTCAGGAAAAG GCCCGGAAGGCTGCTGCGGTGATTCTGCAGATGGTGAGGGAAGGCAAGATTGCCGGTCGCGCTGTTCTGATCGCA GGACCTCCTAGCACCGGAAAGACAGCAATTGCAATGGGCATGGCACAATCTCTCGGGCCGGACGTACCTTTCACC ATGCTTGCTGCTTCTGAAATCTTCTCAATGGAGATGTCGAAGACAGAAGCCCTGACCCAGGCATTCCGGAGGTCC ATCGGTGTGCGCATTAAGGAAGAGAGCGAAATCATTGAAGGTGAAGTTGTGGAGATTCAAATTGACCGGAGTGTT ACTGGCGGCAATAAACAAGGAAAGCTCACGATCAAGACTACGGACATGGAAACGATTTACGACATGGGAACCAAG ATGATTGATTCTATGACAAAGGAACGAGTAATGGCAGGAGATGTAATCTCGATCGACAAGTCCTCAGGCAAGATC ACCAAGCTCGGTCGCTCATACGCACGCTCTCGAGACTACGACGCCATGGGCGCCGATACCAAGTTTGTCCAATGC CCCGAAGGCGAACTCCAGGTTCGCAAGGAGATCGTCCACACCGTCAGCCTCCACGAGATCGACGTCATTAACTCG CGTTCACAAGGCTTCCTGGCTCTCTTCTCCGGCGATACGGGCGAGATTCGGAGTGAAGTTCGGGACCAGATCAAT ACCAAGGTGGCTGAATGGAAGGAAGAGGGTAAGGCAGAGATTATTCCTGGTGTTCTGTTCATTGACGAGGTTCAC ATGCTTGATATCGAGTGTTACTCCTACATCAATCGTGCCCTTGAGGCTGAGTTGGCCCCTATCGTCATCATGGCT AGCAATCGCGGCCAGGCACGCATCCGCGGAACCACCTATACCTCTCCTCACGGTCTACCCCTTGACTTCCTCGAT CGGGTTGTTATCGTCAGCACACATATGTACTCTGGTGACGAGATCCGTCAAATCCTCGCCATCCGAGCGCAGGAA GAAGAGATTGATCTTTCGCCTGATGCTCTCGCCCTTCTCACCAAGATTGGTCAGGAGTCAAATCTGCGTTATGCC AGCAACATTATTACTACTTCGCATCTCTTGAGTCAAAAACGCAAGGCGAAGGAGGTCAGTGTTGATGACGTCCAA CGCAGCTTCCGGTTGTTCTACGACCCTGCTCGGAGTGTGAAGTTCGTCAATCAATATGAGCAGCGCTTCATCGGT GACCAAGGTACCGTTAGCTTCACTGCTGCTACCAATGGCGACGCCATGGAGCTTTCTTAA |
Gene | >Pro_DTO377G3_2|g4550.t1 ATGGCTGTGGTGAGTTACAATTCTTCTGTAATAACCTCACGGTTGCTGACACCAAAACAGCCAATCTCGACTGTC GCAGAGAGCAAGGAGCTCCGGGGACTGAACCTCATCGCCGCCCATTCGCATATCAGAGGCCTTGGTGTCGATGCA GACACTCTTCAACCTCGGGCATCATCCCAAGGCCTTGTGGGTCAGGAAAAGGCCCGGAAGGCTGCTGCGGTGATT CTGCAGATGGTGAGGGAAGGCAAGATTGCCGGTCGCGCTGTTCTGATCGCAGGACCTCCTAGCACCGGAAAGACA GCAATTGCAATGGGCATGGCACAATCTCTCGGGCCGGACGTACCTTTCACCATGCTTGCTGCTTCTGAAATCTTC TCAATGGAGATGTCGAAGACAGAAGCCCTGACCCAGGCATTCCGGAGGTCCATCGGTGTGCGCATTAAGGAAGAG AGCGAAATCATTGAAGGTGAAGTTGTGGAGATTCAAATTGACCGGAGTGTTACTGGCGTGAGTGGATTCTCTATG CAAACGAGTTCATAACATTGGATACTGACTACCTACAGGGCAATAAACAAGGAAAGCTCACGATCAAGACTACGG ACATGGAAACGATTTACGACATGGGAACCAAGATGATTGATTCTATGACAAAGGAACGAGTAATGGCAGGAGATG TAATCTCGATCGACAAGTCCTCAGGCAAGATCACCAAGCTCGGTCGCTCATACGCACGCTCTCGAGACTACGACG CCATGGGCGCCGATACCAAGTTTGTCCAATGCCCCGAAGGCGAACTCCAGGTTCGCAAGGAGATCGTCCACACCG TCAGCCTCCACGAGATCGACGTCATTAACTCGCGTTCACAAGGCTTCCTGGCTCTCTTCTCCGGCGATACGGGCG AGATTCGGAGTGAAGTTCGGGACCAGATCAATACCAAGGTGGCTGAATGGAAGGAAGAGGGTAAGGCAGAGATTA TTCCTGGTGTTCTGTTCATTGACGAGGTTCACATGCTTGATATCGAGTGTTACTCCTACATCAATCGTGCCCTTG AGGCTGAGTTGGCCCCTATCGTCATCATGGCTAGCAATCGCGGCCAGGCACGCATCCGCGGAACCACCTATACCT CTCCTCACGGTCTACCCCTTGACTTCCTCGATCGGGTTGTTATCGTCAGCACACATATGTACTCTGGTGACGAGA TCCGTCAAATCCTCGCCATCCGAGCGCAGGAAGAAGAGATTGATCTTTCGCCTGATGCTCTCGCCCTTCTCACCA AGATTGGTCAGGAGTCAAATCTGCGTTATGCCAGCAACATTATTACTACTTCGCATCTCTTGAGTCAAAAACGCA AGGCGAAGGAGGTCAGTGTTGATGACGTCCAACGCAGCTTCCGGTTGTTCTACGACCCTGCTCGGAGTGTGAAGT TCGTCAATCAATATGAGCAGCGCTTCATCGGTGACCAAGGTACCGTTAGCTTCACTGCTGCTACCAATGGCGACG CCATGGAGCTTTCTTAA |