Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4525.t1
Gene name
Locationscaffold_09:473875..474453
Strand+
Gene length (bp)578
Transcript length (bp)513
Coding sequence length (bp)513
Protein length (aa) 171

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF15341 SLX9 Ribosome biogenesis protein SLX9 1.6E-33 28 159

GO

GO Term Description Terminal node
GO:0030688 preribosome, small subunit precursor Yes
GO:0005730 nucleolus Yes
GO:0030686 90S preribosome Yes
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Yes
GO:0043232 intracellular non-membrane-bounded organelle No
GO:0043170 macromolecule metabolic process No
GO:0030684 preribosome No
GO:0008152 metabolic process No
GO:0005575 cellular_component No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0043228 non-membrane-bounded organelle No
GO:0008150 biological_process No
GO:0006396 RNA processing No
GO:0006725 cellular aromatic compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0034470 ncRNA processing No
GO:0032991 protein-containing complex No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0043229 intracellular organelle No
GO:0006807 nitrogen compound metabolic process No
GO:0006364 rRNA processing No
GO:0016072 rRNA metabolic process No
GO:0110165 cellular anatomical entity No
GO:1990904 ribonucleoprotein complex No
GO:0043226 organelle No
GO:0090304 nucleic acid metabolic process No
GO:0044237 cellular metabolic process No
GO:0009987 cellular process No
GO:0030490 maturation of SSU-rRNA No
GO:0044238 primary metabolic process No
GO:0034660 ncRNA metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4525.t1
MAPIRKSMTKTASGRGAIAKPSVFGDEFRTSKRDKRQIKHAALVSKIEKNSQKTPKRRRASKKLVANLESLADAL
PEAEESNDAASQVNVIKQKTLRHKPGALKRREKMERLERDRFNKNLTEMSNITSAPAANNGEASTESNPTASRWS
ALRNFISQTMEQQPVFKTNK*
Coding >Pro_DTO377G3_2|g4525.t1
ATGGCCCCCATTCGCAAATCAATGACGAAAACTGCCTCGGGCAGAGGTGCGATAGCCAAACCTAGTGTCTTTGGT
GACGAATTTCGCACGAGCAAGAGGGATAAGCGTCAGATCAAGCATGCTGCCCTCGTGTCTAAGATCGAGAAAAAC
TCTCAAAAGACCCCCAAGCGTCGACGAGCATCAAAAAAACTCGTCGCCAACCTCGAATCTTTGGCCGATGCCTTG
CCCGAAGCTGAAGAATCCAACGATGCCGCCAGTCAAGTGAATGTCATCAAGCAGAAGACCCTGAGACACAAGCCA
GGCGCCCTGAAGCGCCGGGAAAAAATGGAAAGATTGGAGCGCGACCGTTTCAACAAGAACCTGACCGAGATGTCC
AACATCACATCAGCTCCGGCTGCCAACAATGGCGAGGCGAGTACCGAGTCGAACCCGACGGCCAGTCGGTGGTCG
GCGCTCCGTAACTTCATCTCACAGACGATGGAACAGCAGCCTGTGTTCAAGACGAATAAATAA
Transcript >Pro_DTO377G3_2|g4525.t1
ATGGCCCCCATTCGCAAATCAATGACGAAAACTGCCTCGGGCAGAGGTGCGATAGCCAAACCTAGTGTCTTTGGT
GACGAATTTCGCACGAGCAAGAGGGATAAGCGTCAGATCAAGCATGCTGCCCTCGTGTCTAAGATCGAGAAAAAC
TCTCAAAAGACCCCCAAGCGTCGACGAGCATCAAAAAAACTCGTCGCCAACCTCGAATCTTTGGCCGATGCCTTG
CCCGAAGCTGAAGAATCCAACGATGCCGCCAGTCAAGTGAATGTCATCAAGCAGAAGACCCTGAGACACAAGCCA
GGCGCCCTGAAGCGCCGGGAAAAAATGGAAAGATTGGAGCGCGACCGTTTCAACAAGAACCTGACCGAGATGTCC
AACATCACATCAGCTCCGGCTGCCAACAATGGCGAGGCGAGTACCGAGTCGAACCCGACGGCCAGTCGGTGGTCG
GCGCTCCGTAACTTCATCTCACAGACGATGGAACAGCAGCCTGTGTTCAAGACGAATAAATAA
Gene >Pro_DTO377G3_2|g4525.t1
ATGGTAAGATGCACTATTACTTATCTTGTTCCACTTTCAGCCGGTTAATTATCGTTCTATCTTCACAGGCCCCCA
TTCGCAAATCAATGACGAAAACTGCCTCGGGCAGAGGTGCGATAGCCAAACCTAGTGTCTTTGGTGACGAATTTC
GCACGAGCAAGAGGGATAAGCGTCAGATCAAGCATGCTGCCCTCGTGTCTAAGATCGAGAAAAACTCTCAAAAGA
CCCCCAAGCGTCGACGAGCATCAAAAAAACTCGTCGCCAACCTCGAATCTTTGGCCGATGCCTTGCCCGAAGCTG
AAGAATCCAACGATGCCGCCAGTCAAGTGAATGTCATCAAGCAGAAGACCCTGAGACACAAGCCAGGCGCCCTGA
AGCGCCGGGAAAAAATGGAAAGATTGGAGCGCGACCGTTTCAACAAGAACCTGACCGAGATGTCCAACATCACAT
CAGCTCCGGCTGCCAACAATGGCGAGGCGAGTACCGAGTCGAACCCGACGGCCAGTCGGTGGTCGGCGCTCCGTA
ACTTCATCTCACAGACGATGGAACAGCAGCCTGTGTTCAAGACGAATAAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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