© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g4525.t1 |
| Gene name | |
| Location | scaffold_09:473875..474453 |
| Strand | + |
| Gene length (bp) | 578 |
| Transcript length (bp) | 513 |
| Coding sequence length (bp) | 513 |
| Protein length (aa) | 171 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF15341 | SLX9 | Ribosome biogenesis protein SLX9 | 1.6E-33 | 28 | 159 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030688 | preribosome, small subunit precursor | Yes |
| GO:0005730 | nucleolus | Yes |
| GO:0030686 | 90S preribosome | Yes |
| GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Yes |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0030684 | preribosome | No |
| GO:0008152 | metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0008150 | biological_process | No |
| GO:0006396 | RNA processing | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0032991 | protein-containing complex | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006364 | rRNA processing | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0043226 | organelle | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0030490 | maturation of SSU-rRNA | No |
| GO:0044238 | primary metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4525.t1 MAPIRKSMTKTASGRGAIAKPSVFGDEFRTSKRDKRQIKHAALVSKIEKNSQKTPKRRRASKKLVANLESLADAL PEAEESNDAASQVNVIKQKTLRHKPGALKRREKMERLERDRFNKNLTEMSNITSAPAANNGEASTESNPTASRWS ALRNFISQTMEQQPVFKTNK* |
| Coding | >Pro_DTO377G3_2|g4525.t1 ATGGCCCCCATTCGCAAATCAATGACGAAAACTGCCTCGGGCAGAGGTGCGATAGCCAAACCTAGTGTCTTTGGT GACGAATTTCGCACGAGCAAGAGGGATAAGCGTCAGATCAAGCATGCTGCCCTCGTGTCTAAGATCGAGAAAAAC TCTCAAAAGACCCCCAAGCGTCGACGAGCATCAAAAAAACTCGTCGCCAACCTCGAATCTTTGGCCGATGCCTTG CCCGAAGCTGAAGAATCCAACGATGCCGCCAGTCAAGTGAATGTCATCAAGCAGAAGACCCTGAGACACAAGCCA GGCGCCCTGAAGCGCCGGGAAAAAATGGAAAGATTGGAGCGCGACCGTTTCAACAAGAACCTGACCGAGATGTCC AACATCACATCAGCTCCGGCTGCCAACAATGGCGAGGCGAGTACCGAGTCGAACCCGACGGCCAGTCGGTGGTCG GCGCTCCGTAACTTCATCTCACAGACGATGGAACAGCAGCCTGTGTTCAAGACGAATAAATAA |
| Transcript | >Pro_DTO377G3_2|g4525.t1 ATGGCCCCCATTCGCAAATCAATGACGAAAACTGCCTCGGGCAGAGGTGCGATAGCCAAACCTAGTGTCTTTGGT GACGAATTTCGCACGAGCAAGAGGGATAAGCGTCAGATCAAGCATGCTGCCCTCGTGTCTAAGATCGAGAAAAAC TCTCAAAAGACCCCCAAGCGTCGACGAGCATCAAAAAAACTCGTCGCCAACCTCGAATCTTTGGCCGATGCCTTG CCCGAAGCTGAAGAATCCAACGATGCCGCCAGTCAAGTGAATGTCATCAAGCAGAAGACCCTGAGACACAAGCCA GGCGCCCTGAAGCGCCGGGAAAAAATGGAAAGATTGGAGCGCGACCGTTTCAACAAGAACCTGACCGAGATGTCC AACATCACATCAGCTCCGGCTGCCAACAATGGCGAGGCGAGTACCGAGTCGAACCCGACGGCCAGTCGGTGGTCG GCGCTCCGTAACTTCATCTCACAGACGATGGAACAGCAGCCTGTGTTCAAGACGAATAAATAA |
| Gene | >Pro_DTO377G3_2|g4525.t1 ATGGTAAGATGCACTATTACTTATCTTGTTCCACTTTCAGCCGGTTAATTATCGTTCTATCTTCACAGGCCCCCA TTCGCAAATCAATGACGAAAACTGCCTCGGGCAGAGGTGCGATAGCCAAACCTAGTGTCTTTGGTGACGAATTTC GCACGAGCAAGAGGGATAAGCGTCAGATCAAGCATGCTGCCCTCGTGTCTAAGATCGAGAAAAACTCTCAAAAGA CCCCCAAGCGTCGACGAGCATCAAAAAAACTCGTCGCCAACCTCGAATCTTTGGCCGATGCCTTGCCCGAAGCTG AAGAATCCAACGATGCCGCCAGTCAAGTGAATGTCATCAAGCAGAAGACCCTGAGACACAAGCCAGGCGCCCTGA AGCGCCGGGAAAAAATGGAAAGATTGGAGCGCGACCGTTTCAACAAGAACCTGACCGAGATGTCCAACATCACAT CAGCTCCGGCTGCCAACAATGGCGAGGCGAGTACCGAGTCGAACCCGACGGCCAGTCGGTGGTCGGCGCTCCGTA ACTTCATCTCACAGACGATGGAACAGCAGCCTGTGTTCAAGACGAATAAATAA |