© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4514.t1 |
| Gene name | |
| Location | scaffold_09:442598..443617 |
| Strand | - |
| Gene length (bp) | 1019 |
| Transcript length (bp) | 960 |
| Coding sequence length (bp) | 960 |
| Protein length (aa) | 320 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00188 | CAP | Cysteine-rich secretory protein family | 3.0E-20 | 63 | 166 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 29 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 168.07 | 102.47 | 233.66 |
| 5d_25C | Five days - 25 degrees Celsius | 197.27 | 120.20 | 274.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 161.06 | 97.26 | 224.86 |
| 10d_25C | Ten days - 25 degrees Celsius | 181.32 | 111.03 | 251.62 |
| 7d_15C | Seven days - 15 degrees Celsius | 232.94 | 134.78 | 331.09 |
| 7d_30C | Seven days - 30 degrees Celsius | 173.68 | 102.83 | 244.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.533036 | no |
| 3d_25C | 7d_25C | 0.898059 | no |
| 3d_25C | 7d_15C | 0.153602 | no |
| 3d_25C | 7d_30C | 0.923455 | no |
| 3d_25C | 10d_25C | 0.798956 | no |
| 5d_25C | 7d_25C | 0.418753 | no |
| 5d_25C | 7d_15C | 0.539224 | no |
| 5d_25C | 7d_30C | 0.651196 | no |
| 5d_25C | 10d_25C | 0.774717 | no |
| 7d_25C | 7d_15C | 0.098462 | no |
| 7d_25C | 7d_30C | 0.810491 | no |
| 7d_25C | 10d_25C | 0.673405 | no |
| 7d_15C | 7d_30C | 0.226837 | no |
| 7d_15C | 10d_25C | 0.302065 | no |
| 7d_30C | 10d_25C | 0.896428 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4514.t1 MDRNTHTRTTRWLAILTLLTVQILNANADVVTVWTTVKVPAPTQTAPVSPSYTSLDEFKGDMLKVTNDYRANHDA KPLKWNDTLADYSKEWASACIWKHSESSYGENLAYGYQNVSAAVIAWGDEGELYNFDKPTGFTEATGHFTQLVWK STTQVGCAAVNCGYTKNDNAKRDVEVEVQDDVFEEDLFEGVVMTPRFSVDEAGGDGLEGLKVARGEPRAQGWYVV CEYTPPGNVVGLHDSYFKKNVLPESSSSTKSSSSTTSESSSTSITEPSPNAATSTTIGSQSQPTGGAMRFALDST LGMMLVTLGAVGVGRGLYT* |
| Coding | >Pro_DTO377G3_2|g4514.t1 ATGGATCGAAACACTCACACCAGAACTACACGATGGTTGGCCATTCTTACACTCCTCACCGTGCAAATACTCAAT GCAAACGCCGACGTAGTAACCGTCTGGACGACGGTAAAAGTGCCAGCGCCAACACAAACAGCCCCCGTGTCACCA TCCTACACCTCCCTGGACGAGTTCAAGGGCGATATGCTGAAAGTCACGAACGATTACCGCGCCAATCACGATGCC AAACCACTGAAATGGAACGACACTTTGGCCGATTACTCGAAGGAGTGGGCATCAGCCTGTATCTGGAAACATTCG GAAAGCAGCTACGGCGAGAACCTCGCATACGGATACCAGAATGTCTCTGCTGCTGTCATTGCCTGGGGTGATGAA GGCGAATTGTATAACTTCGACAAGCCGACAGGCTTCACTGAGGCGACGGGGCATTTCACTCAGTTGGTCTGGAAG TCAACTACGCAGGTTGGGTGTGCCGCTGTCAACTGTGGGTATACGAAGAATGACAATGCGAAAAGAGATGTCGAG GTCGAAGTACAAGATGATGTCTTCGAAGAGGATTTGTTCGAAGGGGTGGTGATGACGCCTCGTTTCAGTGTGGAT GAAGCTGGAGGAGATGGCTTGGAAGGGCTGAAGGTCGCGCGAGGCGAACCGCGGGCTCAAGGCTGGTATGTGGTT TGCGAATATACACCTCCTGGAAATGTTGTGGGCTTGCATGATTCCTACTTCAAAAAGAACGTCTTGCCAGAGTCC TCGTCTTCAACCAAGTCTTCTTCGTCCACGACTTCTGAGTCCTCTTCCACGTCTATCACTGAGCCGTCGCCGAAT GCTGCGACATCCACTACCATCGGAAGTCAGAGTCAGCCTACGGGAGGTGCTATGAGGTTCGCGCTGGACTCGACA TTGGGCATGATGCTGGTAACATTGGGAGCGGTGGGCGTGGGAAGGGGGCTTTATACTTGA |
| Transcript | >Pro_DTO377G3_2|g4514.t1 ATGGATCGAAACACTCACACCAGAACTACACGATGGTTGGCCATTCTTACACTCCTCACCGTGCAAATACTCAAT GCAAACGCCGACGTAGTAACCGTCTGGACGACGGTAAAAGTGCCAGCGCCAACACAAACAGCCCCCGTGTCACCA TCCTACACCTCCCTGGACGAGTTCAAGGGCGATATGCTGAAAGTCACGAACGATTACCGCGCCAATCACGATGCC AAACCACTGAAATGGAACGACACTTTGGCCGATTACTCGAAGGAGTGGGCATCAGCCTGTATCTGGAAACATTCG GAAAGCAGCTACGGCGAGAACCTCGCATACGGATACCAGAATGTCTCTGCTGCTGTCATTGCCTGGGGTGATGAA GGCGAATTGTATAACTTCGACAAGCCGACAGGCTTCACTGAGGCGACGGGGCATTTCACTCAGTTGGTCTGGAAG TCAACTACGCAGGTTGGGTGTGCCGCTGTCAACTGTGGGTATACGAAGAATGACAATGCGAAAAGAGATGTCGAG GTCGAAGTACAAGATGATGTCTTCGAAGAGGATTTGTTCGAAGGGGTGGTGATGACGCCTCGTTTCAGTGTGGAT GAAGCTGGAGGAGATGGCTTGGAAGGGCTGAAGGTCGCGCGAGGCGAACCGCGGGCTCAAGGCTGGTATGTGGTT TGCGAATATACACCTCCTGGAAATGTTGTGGGCTTGCATGATTCCTACTTCAAAAAGAACGTCTTGCCAGAGTCC TCGTCTTCAACCAAGTCTTCTTCGTCCACGACTTCTGAGTCCTCTTCCACGTCTATCACTGAGCCGTCGCCGAAT GCTGCGACATCCACTACCATCGGAAGTCAGAGTCAGCCTACGGGAGGTGCTATGAGGTTCGCGCTGGACTCGACA TTGGGCATGATGCTGGTAACATTGGGAGCGGTGGGCGTGGGAAGGGGGCTTTATACTTGA |
| Gene | >Pro_DTO377G3_2|g4514.t1 ATGGATCGAAACACTCACACCAGAACTACACGATGGTTGGCCATTCTTACACTCCTCACCGTGCAAATACTCAAT GCAAACGCCGACGTAGTAACCGTCTGGACGACGGTAAAAGTGCCAGCGCCAACACAAACAGCCCCCGTGTCACCA TCCTACACCTCCCTGGACGAGTTCAAGGGCGATATGCTGAAAGTCACGAACGATTACCGCGCCAATCACGATGCC AAACCACTGAAATGGAACGACACTTTGGCCGATTACTCGAAGGAGTGGGCATCAGCCTGTATCTGGAAACATTCG GTATGTATCAATTCCCCCCATACTACCAGATAATAGCGCTAATAGTATTACCTTCGCAGGAAAGCAGCTACGGCG AGAACCTCGCATACGGATACCAGAATGTCTCTGCTGCTGTCATTGCCTGGGGTGATGAAGGCGAATTGTATAACT TCGACAAGCCGACAGGCTTCACTGAGGCGACGGGGCATTTCACTCAGTTGGTCTGGAAGTCAACTACGCAGGTTG GGTGTGCCGCTGTCAACTGTGGGTATACGAAGAATGACAATGCGAAAAGAGATGTCGAGGTCGAAGTACAAGATG ATGTCTTCGAAGAGGATTTGTTCGAAGGGGTGGTGATGACGCCTCGTTTCAGTGTGGATGAAGCTGGAGGAGATG GCTTGGAAGGGCTGAAGGTCGCGCGAGGCGAACCGCGGGCTCAAGGCTGGTATGTGGTTTGCGAATATACACCTC CTGGAAATGTTGTGGGCTTGCATGATTCCTACTTCAAAAAGAACGTCTTGCCAGAGTCCTCGTCTTCAACCAAGT CTTCTTCGTCCACGACTTCTGAGTCCTCTTCCACGTCTATCACTGAGCCGTCGCCGAATGCTGCGACATCCACTA CCATCGGAAGTCAGAGTCAGCCTACGGGAGGTGCTATGAGGTTCGCGCTGGACTCGACATTGGGCATGATGCTGG TAACATTGGGAGCGGTGGGCGTGGGAAGGGGGCTTTATACTTGA |