© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4513.t1 |
| Gene name | |
| Location | scaffold_09:439867..442284 |
| Strand | + |
| Gene length (bp) | 2417 |
| Transcript length (bp) | 2232 |
| Coding sequence length (bp) | 2232 |
| Protein length (aa) | 744 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08662 | eIF2A | Eukaryotic translation initiation factor eIF2A | 7.3E-34 | 404 | 626 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.1E-06 | 78 | 118 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 80.82 | 49.34 | 112.30 |
| 5d_25C | Five days - 25 degrees Celsius | 66.19 | 40.65 | 91.74 |
| 7d_25C | Seven days - 25 degrees Celsius | 73.01 | 44.78 | 101.25 |
| 10d_25C | Ten days - 25 degrees Celsius | 70.16 | 43.10 | 97.22 |
| 7d_15C | Seven days - 15 degrees Celsius | 78.25 | 47.77 | 108.73 |
| 7d_30C | Seven days - 30 degrees Celsius | 74.41 | 45.38 | 103.44 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.413979 | no |
| 3d_25C | 7d_25C | 0.718314 | no |
| 3d_25C | 7d_15C | 0.924573 | no |
| 3d_25C | 7d_30C | 0.785582 | no |
| 3d_25C | 10d_25C | 0.589254 | no |
| 5d_25C | 7d_25C | 0.724100 | no |
| 5d_25C | 7d_15C | 0.503331 | no |
| 5d_25C | 7d_30C | 0.675247 | no |
| 5d_25C | 10d_25C | 0.849611 | no |
| 7d_25C | 7d_15C | 0.816697 | no |
| 7d_25C | 7d_30C | 0.956115 | no |
| 7d_25C | 10d_25C | 0.900861 | no |
| 7d_15C | 7d_30C | 0.877042 | no |
| 7d_15C | 10d_25C | 0.697569 | no |
| 7d_30C | 10d_25C | 0.851052 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4513.t1 MAPSFDTLSEQDLHEEEEEEIDFSDLKEQYEVKVEEGLDTFIVIDGLPVVPEDSRQKLVKFLLRKLNSVGSTSED AVFMPVNDKKMTEGFAFVEYETPEMAVAAVKQLHGVPLDKKHIMAVNKLMDIERYGREGRIDEEYKPPVPEPFKE KEHLRSWMGDASARDQFALYRNDKVGVFWNNKTNPPENVVDRAHWTQLFVQWSPKGTFLASVHPQGVQLWGGESF SKQKQFPHPFVQLIEFSPLEGYLTTWSARPIQVEEGQPILTYEEDGKNIIIWDIETGKPLRSFVSHDLAAPADIE GSDVAPKKKVQWPAFKWSSDEKYVARMLQGQSLSIYELPNMNLLGRTSVKIEGAMDFEWSPATVAREGIKQYEQL LCFWTPEIGSNPARVGMMSVPSKEVVRTRNLFNVSDVKLHWQSQGAYVCVKVDRHSKSKKSMATNLEIFRVREKG VPVEVVDSLKDTVINFAWEPNGSRFVVIANGEAPTGAAVLPKTSVSFFAPEKKGYTAGNFKLVRTIEKKTSNGIY WSPKGRFVIVATVHSQTSFDMDFWDLDFEGEKIEAEKDLAANLQLMKTVEHYGVTDVDWDSTGRYVVSSASVWTH SMENGWNMHTFSGTTLSENPTEKFKQFLWRPRPATLLSKEEQKQVRKNLREYSKEFDEEDKYAVDIANTAVVETR KRVLSEWVAWLRREKELLAEEKEAFNLPEDADSPTAASDARPVVEDQGDSVVEEIVEEIIEETEEVIG* |
| Coding | >Pro_DTO377G3_2|g4513.t1 ATGGCGCCCAGTTTCGATACCCTGTCCGAGCAGGATCTCCACGAGGAAGAGGAGGAGGAGATTGATTTCTCCGAT CTCAAGGAGCAATATGAAGTGAAAGTCGAGGAGGGACTGGACACATTTATCGTCATCGATGGCCTCCCCGTTGTA CCCGAAGATAGCCGACAAAAACTCGTCAAGTTCTTATTGAGAAAACTCAACTCCGTTGGCAGCACCTCCGAAGAT GCGGTTTTCATGCCCGTTAACGACAAGAAGATGACTGAAGGATTCGCCTTTGTGGAATATGAAACCCCAGAAATG GCAGTCGCCGCCGTCAAGCAGTTGCACGGCGTCCCTCTCGATAAGAAGCACATTATGGCTGTCAACAAGTTGATG GATATCGAGCGTTATGGTCGTGAAGGTCGTATTGATGAAGAATACAAGCCGCCTGTCCCGGAACCGTTCAAGGAG AAGGAGCACCTGCGCTCGTGGATGGGAGATGCCAGCGCCCGGGATCAATTCGCCCTTTACCGTAACGACAAGGTT GGCGTGTTCTGGAACAACAAGACGAACCCACCGGAGAATGTCGTGGACCGCGCTCACTGGACACAACTTTTCGTT CAATGGTCCCCCAAGGGTACATTCCTCGCCTCCGTTCACCCCCAGGGTGTCCAACTCTGGGGCGGCGAGTCCTTC TCTAAGCAAAAGCAGTTCCCCCACCCCTTCGTGCAGTTGATCGAGTTCTCCCCGCTCGAGGGCTACTTGACAACG TGGTCAGCACGGCCCATCCAGGTCGAGGAAGGCCAACCCATATTGACCTACGAGGAGGACGGCAAGAACATCATT ATCTGGGATATCGAGACTGGCAAGCCTCTCCGTTCGTTTGTGTCGCACGATTTGGCTGCCCCTGCGGATATTGAG GGTAGCGATGTTGCGCCTAAGAAAAAGGTGCAGTGGCCTGCCTTCAAGTGGTCCTCGGACGAGAAGTACGTTGCT CGCATGCTCCAAGGCCAATCTCTCTCTATCTACGAACTTCCCAACATGAACCTTCTTGGTCGCACTTCCGTGAAG ATTGAGGGTGCTATGGACTTCGAGTGGTCCCCTGCCACCGTCGCCCGCGAGGGTATCAAGCAGTACGAGCAATTG CTCTGCTTCTGGACTCCTGAAATTGGCAGCAACCCCGCCCGTGTCGGTATGATGAGCGTTCCCTCCAAGGAGGTT GTCCGAACCCGTAACCTGTTCAACGTTTCCGATGTCAAGCTGCACTGGCAATCACAGGGTGCCTACGTCTGCGTC AAGGTCGACCGTCACTCTAAGTCTAAGAAGTCTATGGCTACTAACTTGGAGATCTTCCGCGTTCGCGAGAAGGGT GTGCCCGTCGAGGTTGTTGACAGTCTCAAGGATACCGTGATTAACTTTGCCTGGGAGCCCAATGGATCCCGATTC GTCGTTATCGCCAACGGTGAGGCACCAACTGGTGCCGCCGTCCTCCCTAAGACTTCCGTTTCATTCTTCGCGCCT GAGAAGAAGGGCTACACTGCCGGTAACTTCAAGCTGGTGCGCACCATTGAGAAGAAGACCAGCAACGGCATCTAC TGGTCGCCCAAGGGCCGATTCGTTATTGTCGCCACCGTTCACTCCCAGACCAGCTTTGACATGGACTTCTGGGAT CTCGACTTCGAGGGCGAGAAGATCGAGGCTGAGAAGGATCTCGCAGCCAACCTCCAACTGATGAAGACTGTAGAG CACTACGGTGTCACCGATGTTGACTGGGACTCCACTGGTCGTTACGTTGTTAGCAGCGCCAGTGTGTGGACTCAC TCGATGGAGAACGGCTGGAACATGCACACCTTCTCCGGTACTACCCTCTCCGAGAACCCCACCGAAAAGTTCAAG CAGTTCCTTTGGCGCCCACGCCCTGCCACTCTTCTAAGCAAGGAGGAGCAGAAGCAAGTGCGCAAGAATCTCCGC GAGTACTCAAAGGAGTTCGACGAAGAAGACAAGTACGCTGTCGACATCGCCAACACCGCCGTTGTCGAGACCCGC AAGCGTGTACTCAGCGAGTGGGTCGCCTGGCTCCGTCGGGAGAAGGAGCTCCTGGCGGAAGAGAAGGAGGCCTTC AACCTCCCCGAGGACGCAGATTCACCCACAGCCGCCAGCGACGCGCGCCCGGTTGTCGAAGATCAGGGCGACTCC GTGGTCGAGGAGATTGTGGAGGAGATTATCGAGGAGACCGAGGAGGTCATTGGCTGA |
| Transcript | >Pro_DTO377G3_2|g4513.t1 ATGGCGCCCAGTTTCGATACCCTGTCCGAGCAGGATCTCCACGAGGAAGAGGAGGAGGAGATTGATTTCTCCGAT CTCAAGGAGCAATATGAAGTGAAAGTCGAGGAGGGACTGGACACATTTATCGTCATCGATGGCCTCCCCGTTGTA CCCGAAGATAGCCGACAAAAACTCGTCAAGTTCTTATTGAGAAAACTCAACTCCGTTGGCAGCACCTCCGAAGAT GCGGTTTTCATGCCCGTTAACGACAAGAAGATGACTGAAGGATTCGCCTTTGTGGAATATGAAACCCCAGAAATG GCAGTCGCCGCCGTCAAGCAGTTGCACGGCGTCCCTCTCGATAAGAAGCACATTATGGCTGTCAACAAGTTGATG GATATCGAGCGTTATGGTCGTGAAGGTCGTATTGATGAAGAATACAAGCCGCCTGTCCCGGAACCGTTCAAGGAG AAGGAGCACCTGCGCTCGTGGATGGGAGATGCCAGCGCCCGGGATCAATTCGCCCTTTACCGTAACGACAAGGTT GGCGTGTTCTGGAACAACAAGACGAACCCACCGGAGAATGTCGTGGACCGCGCTCACTGGACACAACTTTTCGTT CAATGGTCCCCCAAGGGTACATTCCTCGCCTCCGTTCACCCCCAGGGTGTCCAACTCTGGGGCGGCGAGTCCTTC TCTAAGCAAAAGCAGTTCCCCCACCCCTTCGTGCAGTTGATCGAGTTCTCCCCGCTCGAGGGCTACTTGACAACG TGGTCAGCACGGCCCATCCAGGTCGAGGAAGGCCAACCCATATTGACCTACGAGGAGGACGGCAAGAACATCATT ATCTGGGATATCGAGACTGGCAAGCCTCTCCGTTCGTTTGTGTCGCACGATTTGGCTGCCCCTGCGGATATTGAG GGTAGCGATGTTGCGCCTAAGAAAAAGGTGCAGTGGCCTGCCTTCAAGTGGTCCTCGGACGAGAAGTACGTTGCT CGCATGCTCCAAGGCCAATCTCTCTCTATCTACGAACTTCCCAACATGAACCTTCTTGGTCGCACTTCCGTGAAG ATTGAGGGTGCTATGGACTTCGAGTGGTCCCCTGCCACCGTCGCCCGCGAGGGTATCAAGCAGTACGAGCAATTG CTCTGCTTCTGGACTCCTGAAATTGGCAGCAACCCCGCCCGTGTCGGTATGATGAGCGTTCCCTCCAAGGAGGTT GTCCGAACCCGTAACCTGTTCAACGTTTCCGATGTCAAGCTGCACTGGCAATCACAGGGTGCCTACGTCTGCGTC AAGGTCGACCGTCACTCTAAGTCTAAGAAGTCTATGGCTACTAACTTGGAGATCTTCCGCGTTCGCGAGAAGGGT GTGCCCGTCGAGGTTGTTGACAGTCTCAAGGATACCGTGATTAACTTTGCCTGGGAGCCCAATGGATCCCGATTC GTCGTTATCGCCAACGGTGAGGCACCAACTGGTGCCGCCGTCCTCCCTAAGACTTCCGTTTCATTCTTCGCGCCT GAGAAGAAGGGCTACACTGCCGGTAACTTCAAGCTGGTGCGCACCATTGAGAAGAAGACCAGCAACGGCATCTAC TGGTCGCCCAAGGGCCGATTCGTTATTGTCGCCACCGTTCACTCCCAGACCAGCTTTGACATGGACTTCTGGGAT CTCGACTTCGAGGGCGAGAAGATCGAGGCTGAGAAGGATCTCGCAGCCAACCTCCAACTGATGAAGACTGTAGAG CACTACGGTGTCACCGATGTTGACTGGGACTCCACTGGTCGTTACGTTGTTAGCAGCGCCAGTGTGTGGACTCAC TCGATGGAGAACGGCTGGAACATGCACACCTTCTCCGGTACTACCCTCTCCGAGAACCCCACCGAAAAGTTCAAG CAGTTCCTTTGGCGCCCACGCCCTGCCACTCTTCTAAGCAAGGAGGAGCAGAAGCAAGTGCGCAAGAATCTCCGC GAGTACTCAAAGGAGTTCGACGAAGAAGACAAGTACGCTGTCGACATCGCCAACACCGCCGTTGTCGAGACCCGC AAGCGTGTACTCAGCGAGTGGGTCGCCTGGCTCCGTCGGGAGAAGGAGCTCCTGGCGGAAGAGAAGGAGGCCTTC AACCTCCCCGAGGACGCAGATTCACCCACAGCCGCCAGCGACGCGCGCCCGGTTGTCGAAGATCAGGGCGACTCC GTGGTCGAGGAGATTGTGGAGGAGATTATCGAGGAGACCGAGGAGGTCATTGGCTGA |
| Gene | >Pro_DTO377G3_2|g4513.t1 ATGGCGCCCAGTTTCGATACCCTGTCCGAGCAGGATCTCCACGAGGAAGAGGAGGAGGAGATTGATTTCTCCGGT GAGTGCAAGATTTGTCGTGGTCTGTGTGCCCCTCTCTAACACATTAGTCCACAGATCTCAAGGAGCAATATGAAG TGAAAGTCGAGGAGGGACTGGACACATTTATCGTCATCGATGGCCTCCCCGTTGTACCCGAAGATAGCCGACAAA AACTCGTCAAGTTCTTATTGAGAAAACTCAACTCCGTTGGCAGCACCTCCGAAGATGCGGTTTTCATGCCCGTTA ACGACAAGAAGATGACTGAAGGGTGCGTATTGGATATCTAATGAGATGTGGAGGAATCATGGACGATCTCTAACC TTCGTTCGCGCGATATAGATTCGCCTTTGTGGAATATGAAACCCCAGAAATGGCAGTCGCCGCCGTCAAGCAGTT GCACGGCGTCCCTCTCGATAAGAAGCACATTATGGCTGTCAACAAGTTGATGGATATCGAGCGTTATGGTCGTGA AGGTCGTATTGATGAAGAATACAAGCCGCCTGTCCCGGAACCGTTCAAGGAGAAGGAGCACCTGCGCTCGTGGAT GGGAGATGCCAGCGCCCGGGATCAATTCGCCCTTTACCGTAACGACAAGGTTGGCGTGTTCTGGAACAACAAGAC GAACCCACCGGAGAATGTCGTGGACCGCGCTCACTGGACACAACTTTTCGTTCAATGGTCCCCCAAGGGTACATT CCTCGCCTCCGTTCACCCCCAGGGTGTCCAACTCTGGGGCGGCGAGTCCTTCTCTAAGCAAAAGCAGTTCCCCCA CCCCTTCGTGCAGTTGATCGAGTTCTCCCCGCTCGAGGGCTACTTGACAACGTGGTCAGCACGGCCCATCCAGGT CGAGGAAGGCCAACCCATATTGACCTACGAGGAGGACGGCAAGAACATCATTATCTGGGATATCGAGACTGGCAA GCCTCTCCGTTCGTTTGTGTCGCACGATTTGGCTGCCCCTGCGGATATTGAGGGTAGCGATGTTGCGCCTAAGAA AAAGGTGCAGTGGCCTGCCTTCAAGTGGTCCTCGGACGAGAAGTACGTTGCTCGCATGCTCCAAGGCCAATCTCT CTCTATCTACGAACTTCCCAACATGAACCTTCTTGGTCGCACTTCCGTGAAGATTGAGGGTGCTATGGACTTCGA GTGGTCCCCTGCCACCGTCGCCCGCGAGGGTATCAAGCAGTACGAGCAATTGCTCTGCTTCTGGACTCCTGAAAT TGGCAGCAACCCCGCCCGTGTCGGTATGATGAGCGTTCCCTCCAAGGAGGTTGTCCGAACCCGTAACCTGTTCAA CGTTTCCGATGTCAAGCTGCACTGGCAATCACAGGGTGCCTACGTCTGCGTCAAGGTCGACCGTCACTCTAAGTC TAAGAAGTCTATGGCTACTAACTTGGAGATCTTCCGCGTTCGCGAGAAGGGTGTGCCCGTCGAGGTTGTTGACAG TCTCAAGGATACCGTGATTAACTTTGCCTGGGAGCCCAATGGATCCCGATTCGTCGTTATCGCCAACGGTGAGGC ACCAACTGGTGCCGCCGTCCTCCCTAAGACTTCCGTTTCATTCTTCGCGCCTGAGAAGAAGGGCTACACTGCCGG TAACTTCAAGCTGGTGCGCACCATTGAGAAGAAGACCAGCAACGGCATCTACTGGTCGCCCAAGGGCCGATTCGT TATTGTCGCCACCGTTCACTCCCAGACCAGCTTTGACATGGACTTCTGGGATCTCGACTTCGAGGGCGAGAAGAT CGAGGCTGAGAAGGATCTCGCAGCCAACCTCCAACTGATGAAGACTGTAGAGCACTACGGTGTCACCGATGTTGA CTGGGACTCCACTGGTCGTTACGTTGTTAGCAGCGCCAGTGTGTGGACTCACTCGGTAAGATTTTACCTCGTTCT ATTTTTGATTGTGTTACATAATATTGACCCCATTATAGATGGAGAACGGCTGGAACATGCACACCTTCTCCGGTA CTACCCTCTCCGAGAACCCCACCGAAAAGTTCAAGCAGTTCCTTTGGCGCCCACGCCCTGCCACTCTTCTAAGCA AGGAGGAGCAGAAGCAAGTGCGCAAGAATCTCCGCGAGTACTCAAAGGAGTTCGACGAAGAAGACAAGTACGCTG TCGACATCGCCAACACCGCCGTTGTCGAGACCCGCAAGCGTGTACTCAGCGAGTGGGTCGCCTGGCTCCGTCGGG AGAAGGAGCTCCTGGCGGAAGAGAAGGAGGCCTTCAACCTCCCCGAGGACGCAGATTCACCCACAGCCGCCAGCG ACGCGCGCCCGGTTGTCGAAGATCAGGGCGACTCCGTGGTCGAGGAGATTGTGGAGGAGATTATCGAGGAGACCG AGGAGGTCATTGGCTGA |