© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g4492.t1 |
| Gene name | |
| Location | scaffold_09:388059..389548 |
| Strand | - |
| Gene length (bp) | 1489 |
| Transcript length (bp) | 1383 |
| Coding sequence length (bp) | 1383 |
| Protein length (aa) | 461 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03663 | Glyco_hydro_76 | Glycosyl hydrolase family 76 | 6.0E-139 | 32 | 397 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 437 | 459 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 118.18 | 72.37 | 163.99 |
| 5d_25C | Five days - 25 degrees Celsius | 58.97 | 35.07 | 82.87 |
| 7d_25C | Seven days - 25 degrees Celsius | 66.72 | 39.78 | 93.65 |
| 10d_25C | Ten days - 25 degrees Celsius | 54.94 | 33.06 | 76.81 |
| 7d_15C | Seven days - 15 degrees Celsius | 71.27 | 41.87 | 100.68 |
| 7d_30C | Seven days - 30 degrees Celsius | 54.61 | 32.47 | 76.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.006000 | yes |
| 3d_25C | 7d_15C | 0.016924 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.676859 | no |
| 5d_25C | 7d_15C | 0.477270 | no |
| 5d_25C | 7d_30C | 0.811468 | no |
| 5d_25C | 10d_25C | 0.824395 | no |
| 7d_25C | 7d_15C | 0.845290 | no |
| 7d_25C | 7d_30C | 0.438975 | no |
| 7d_25C | 10d_25C | 0.456448 | no |
| 7d_15C | 7d_30C | 0.285957 | no |
| 7d_15C | 10d_25C | 0.296745 | no |
| 7d_30C | 10d_25C | 0.987419 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4492.t1 MILSKWLATLLGGAFAVQGALAIDVNLDDETSLKNAAKTVATTMMDFYNARDSKDIPGKFDGTWWEGGSMFMTLI MYWFVSGDSQFNDAVQDGMYFQKGDDNFFPSNYSQYLGNDDQVFWGLAAITAAEFNYPERDGEPSWVSLAQGVFN TQYPRWDTSSCHGGMRWQIWPYQDGYLTKNAISNGGLFQLSARLALYTGNKTYADWAERIWDWSATTPLLKEKNW NIADTTTCGTQCTDHGDYQWTYNYATYISGAAYMHNYTNGTETKWKDGVVGLIKTSQQFYPTTGFNGDGGQILCE ITCEAGGNCDRNQITFKAYFANWLGMLTTIVPDTYDLIFPQLRTSAQAAAKQCSGGDDGVHCGIRWYKQAAWDGT KGLEQQMAVLGVLAANLIPFKNKAPLSLTSGGTSKSNPTAGTNTSDNDVPVLNTIGTGDRAGAGILTVIFVSGWA VAVTWMIRGG* |
| Coding | >Pro_DTO377G3_2|g4492.t1 ATGATTTTGTCCAAGTGGCTGGCCACTCTACTGGGTGGCGCGTTCGCCGTCCAGGGTGCCCTCGCTATCGATGTG AACCTCGATGACGAGACCTCCCTGAAAAATGCGGCCAAAACAGTCGCCACCACGATGATGGATTTCTACAATGCT CGCGACTCCAAGGACATCCCTGGTAAATTCGATGGCACTTGGTGGGAGGGCGGTTCCATGTTCATGACCCTTATC ATGTACTGGTTCGTGTCCGGGGACAGCCAGTTCAACGACGCCGTTCAGGACGGAATGTATTTCCAGAAGGGTGAC GACAATTTCTTCCCGAGCAACTATAGTCAGTACCTGGGCAACGACGATCAGGTCTTTTGGGGTCTCGCTGCTATT ACCGCCGCGGAATTCAACTACCCTGAAAGAGATGGCGAACCATCCTGGGTATCTCTCGCACAGGGTGTCTTCAAC ACCCAGTACCCCCGATGGGATACGAGCAGCTGCCACGGTGGTATGCGCTGGCAGATTTGGCCGTACCAGGATGGT TACCTTACGAAGAACGCGATTTCGAACGGAGGACTGTTCCAACTTTCGGCCCGCCTCGCCCTCTACACCGGAAAT AAGACATATGCTGACTGGGCTGAACGCATTTGGGATTGGAGTGCTACCACCCCGCTGCTCAAGGAGAAGAACTGG AACATCGCCGATACTACCACCTGCGGCACGCAGTGCACGGATCATGGCGATTACCAGTGGACCTACAACTATGCC ACCTATATCAGTGGTGCCGCCTACATGCACAACTACACTAATGGCACTGAAACGAAATGGAAGGATGGTGTTGTG GGCCTCATCAAGACCTCCCAGCAGTTCTACCCGACCACAGGATTTAATGGAGACGGTGGCCAAATTCTTTGCGAG ATCACCTGCGAAGCCGGCGGTAATTGTGATCGCAACCAAATTACCTTCAAGGCCTATTTCGCCAACTGGCTTGGA ATGTTGACTACAATCGTCCCCGACACCTACGACTTGATCTTCCCTCAGCTGAGAACCTCAGCCCAGGCCGCTGCA AAGCAATGCTCGGGTGGTGATGACGGTGTACATTGTGGTATTCGCTGGTACAAGCAAGCCGCTTGGGACGGGACC AAAGGTCTGGAGCAACAGATGGCTGTGCTGGGTGTCCTGGCTGCCAATCTGATTCCGTTCAAGAACAAGGCGCCA TTGAGTTTAACATCAGGTGGAACTTCCAAGAGTAACCCGACCGCTGGCACTAATACTTCGGACAATGATGTCCCT GTATTGAATACCATCGGTACCGGTGACCGTGCAGGTGCAGGCATCTTGACCGTCATCTTCGTCAGTGGCTGGGCT GTTGCTGTGACCTGGATGATCCGCGGCGGTTAA |
| Transcript | >Pro_DTO377G3_2|g4492.t1 ATGATTTTGTCCAAGTGGCTGGCCACTCTACTGGGTGGCGCGTTCGCCGTCCAGGGTGCCCTCGCTATCGATGTG AACCTCGATGACGAGACCTCCCTGAAAAATGCGGCCAAAACAGTCGCCACCACGATGATGGATTTCTACAATGCT CGCGACTCCAAGGACATCCCTGGTAAATTCGATGGCACTTGGTGGGAGGGCGGTTCCATGTTCATGACCCTTATC ATGTACTGGTTCGTGTCCGGGGACAGCCAGTTCAACGACGCCGTTCAGGACGGAATGTATTTCCAGAAGGGTGAC GACAATTTCTTCCCGAGCAACTATAGTCAGTACCTGGGCAACGACGATCAGGTCTTTTGGGGTCTCGCTGCTATT ACCGCCGCGGAATTCAACTACCCTGAAAGAGATGGCGAACCATCCTGGGTATCTCTCGCACAGGGTGTCTTCAAC ACCCAGTACCCCCGATGGGATACGAGCAGCTGCCACGGTGGTATGCGCTGGCAGATTTGGCCGTACCAGGATGGT TACCTTACGAAGAACGCGATTTCGAACGGAGGACTGTTCCAACTTTCGGCCCGCCTCGCCCTCTACACCGGAAAT AAGACATATGCTGACTGGGCTGAACGCATTTGGGATTGGAGTGCTACCACCCCGCTGCTCAAGGAGAAGAACTGG AACATCGCCGATACTACCACCTGCGGCACGCAGTGCACGGATCATGGCGATTACCAGTGGACCTACAACTATGCC ACCTATATCAGTGGTGCCGCCTACATGCACAACTACACTAATGGCACTGAAACGAAATGGAAGGATGGTGTTGTG GGCCTCATCAAGACCTCCCAGCAGTTCTACCCGACCACAGGATTTAATGGAGACGGTGGCCAAATTCTTTGCGAG ATCACCTGCGAAGCCGGCGGTAATTGTGATCGCAACCAAATTACCTTCAAGGCCTATTTCGCCAACTGGCTTGGA ATGTTGACTACAATCGTCCCCGACACCTACGACTTGATCTTCCCTCAGCTGAGAACCTCAGCCCAGGCCGCTGCA AAGCAATGCTCGGGTGGTGATGACGGTGTACATTGTGGTATTCGCTGGTACAAGCAAGCCGCTTGGGACGGGACC AAAGGTCTGGAGCAACAGATGGCTGTGCTGGGTGTCCTGGCTGCCAATCTGATTCCGTTCAAGAACAAGGCGCCA TTGAGTTTAACATCAGGTGGAACTTCCAAGAGTAACCCGACCGCTGGCACTAATACTTCGGACAATGATGTCCCT GTATTGAATACCATCGGTACCGGTGACCGTGCAGGTGCAGGCATCTTGACCGTCATCTTCGTCAGTGGCTGGGCT GTTGCTGTGACCTGGATGATCCGCGGCGGTTAA |
| Gene | >Pro_DTO377G3_2|g4492.t1 ATGATTTTGTCCAAGTGGCTGGCCACTCTACTGGGTGGCGCGTTCGCCGTCCAGGGTGCCCTCGCTATCGATGTG AACCTCGATGACGAGAGTACGTTCTCCCCCCCTTCGATCGCATTCATTATCTAATTCAGTAACTTCTCTCAGCCT CCCTGAAAAATGCGGCCAAAACAGTCGCCACCACGATGATGGATTTCTACAATGCTCGCGACTCCAAGGACATCC CTGGTAAATTCGATGGCACTTGGTGGGAGGGCGGTTCCATGTTCATGACCCTTATCATGTACTGGTTCGTGTCCG GGGACAGCCAGTTCAACGACGCCGTTCAGGACGGAATGTATTTCCAGAAGGGTGACGACAATTTCTTCCCGAGCA ACTATAGTCAGTACCTGGGCAACGACGATCAGGTCTTTTGGGGTCTCGCTGCTATTACCGCCGCGGAATTCAACT ACCCTGAAAGAGATGGCGAACCATCCTGGGTATCTCTCGCACAGGGTGTCTTCAACACCCAGTACCCCCGATGGG ATACGAGCAGCTGCCACGGTGGTATGCGCTGGCAGATTTGGCCGTACCAGGATGGTTACCTTACGAAGAACGCGA TTTCGAACGGAGGACTGTTCCAACTTTCGGCCCGCCTCGCCCTCTACACCGGAAATAAGACATATGCTGACTGGG CTGAACGCATTTGGGATTGGAGTGCTACCACCCCGCTGCTCAAGGAGAAGAACTGGAACATCGCCGATACTACCA CCTGCGGCACGCAGTGCACGGATCATGGCGATTACCAGTGGACCTACAACTATGCCACCTATATCAGTGGTGCCG CCTACATGCACAACTACGTATGTCCTGTCTTGCTGCCTAAGAATGGTTGATACTAACCTCGGACTAGACTAATGG CACTGAAACGAAATGGAAGGATGGTGTTGTGGGCCTCATCAAGACCTCCCAGCAGTTCTACCCGACCACAGGATT TAATGGAGACGGTGGCCAAATTCTTTGCGAGATCACCTGCGAAGCCGGCGGTAATTGTGATCGCAACCAAATTAC CTTCAAGGCCTATTTCGCCAACTGGCTTGGAATGTTGACTACAATCGTCCCCGACACCTACGACTTGATCTTCCC TCAGCTGAGAACCTCAGCCCAGGCCGCTGCAAAGCAATGCTCGGGTGGTGATGACGGTGTACATTGTGGTATTCG CTGGTACAAGCAAGCCGCTTGGGACGGGACCAAAGGTCTGGAGCAACAGATGGCTGTGCTGGGTGTCCTGGCTGC CAATCTGATTCCGTTCAAGAACAAGGCGCCATTGAGTTTAACATCAGGTGGAACTTCCAAGAGTAACCCGACCGC TGGCACTAATACTTCGGACAATGATGTCCCTGTATTGAATACCATCGGTACCGGTGACCGTGCAGGTGCAGGCAT CTTGACCGTCATCTTCGTCAGTGGCTGGGCTGTTGCTGTGACCTGGATGATCCGCGGCGGTTAA |