© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4485.t1 |
| Gene name | |
| Location | scaffold_09:365189..366997 |
| Strand | - |
| Gene length (bp) | 1808 |
| Transcript length (bp) | 1752 |
| Coding sequence length (bp) | 1752 |
| Protein length (aa) | 584 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03441 | FAD_binding_7 | FAD binding domain of DNA photolyase | 2.0E-82 | 382 | 577 |
| PF00875 | DNA_photolyase | DNA photolyase | 1.1E-40 | 93 | 257 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 59.27 | 36.02 | 82.51 |
| 5d_25C | Five days - 25 degrees Celsius | 66.46 | 40.45 | 92.47 |
| 7d_25C | Seven days - 25 degrees Celsius | 78.24 | 48.03 | 108.45 |
| 10d_25C | Ten days - 25 degrees Celsius | 100.00 | 60.73 | 139.28 |
| 7d_15C | Seven days - 15 degrees Celsius | 50.26 | 30.45 | 70.07 |
| 7d_30C | Seven days - 30 degrees Celsius | 146.63 | 87.31 | 205.95 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.681488 | no |
| 3d_25C | 7d_25C | 0.223890 | no |
| 3d_25C | 7d_15C | 0.527933 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.008469 | yes |
| 5d_25C | 7d_25C | 0.523640 | no |
| 5d_25C | 7d_15C | 0.222094 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.052547 | no |
| 7d_25C | 7d_15C | 0.028642 | yes |
| 7d_25C | 7d_30C | 0.001804 | yes |
| 7d_25C | 10d_25C | 0.279542 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.074872 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4485.t1 MPPKRKATEPAAEKHDGLSASKKGRPDLHQPHPNANQTEDFGIVLRQFYPAEMSNERCRAYTDGELERPIETLQR ACRETATKRQSINVGNAVVHWFKSDLRLHDNRSLYTAYQTAKENQIPLIGLYIVSPEDWTAHLTSPARVDFTLRT LERLQQDLGELDIPLHMETQEKRKAIPKRIVELCQQWGAKNLYANIEYEVDELRREAKLVRLCADNDINFAPTHD TCVVTPGALASQQGKQYSVYTPWYRSWLAFLKENPDYLEVSEEPGSNPGNARHQLKDLFNCKVPAAPKTHTLSGE DQKRFEGLYPAGEHEALRRLDKFLEEKGRKYEELRSMLPGEHTSVLSPYIACGALSVRTAVATAKRVNKGHLDRY DPGYMTWISELAWRDFYKHVLVNWPFICMNKCFKPEHTDIEWEYDKDQFQAWCDGKTGFPIVDAAMRQLRHCAWM HNRTRMVVSSFLTKDLMLDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLRQSERFDPEGEY IRHWVPELRDVSGKAIHEPYARGAAAIAQKNGYPKPIVDHAESRDRALKRFKSVLQKG* |
| Coding | >Pro_DTO377G3_2|g4485.t1 ATGCCACCGAAGAGGAAAGCTACCGAACCGGCAGCTGAAAAGCATGATGGCTTGAGTGCTAGCAAAAAAGGCCGA CCAGACTTGCACCAACCGCACCCGAACGCGAACCAAACCGAGGATTTCGGCATAGTCCTACGCCAGTTCTATCCG GCCGAGATGAGCAATGAGCGCTGCCGAGCATACACCGATGGCGAGCTGGAACGCCCTATTGAAACGCTACAGAGG GCTTGCCGAGAAACCGCCACCAAGCGCCAGTCGATCAACGTGGGTAATGCCGTGGTACATTGGTTCAAGAGCGAT CTCCGACTGCATGATAATAGGTCACTGTACACTGCCTACCAAACTGCGAAAGAAAACCAGATCCCGTTGATCGGC CTTTACATCGTCTCCCCCGAAGATTGGACTGCCCATTTGACTAGCCCTGCTCGGGTGGATTTCACGCTGCGCACC CTCGAGCGATTGCAACAGGACCTGGGGGAGTTGGATATCCCTCTGCACATGGAAACACAAGAGAAACGGAAGGCA ATCCCGAAACGGATTGTGGAATTGTGTCAACAGTGGGGTGCGAAGAACCTATATGCGAATATCGAGTATGAGGTA GATGAACTGCGACGCGAAGCTAAGCTTGTTAGACTTTGCGCGGATAATGATATTAATTTCGCTCCCACTCATGAC ACATGTGTGGTCACTCCGGGCGCGCTGGCTAGCCAGCAAGGGAAACAATATTCCGTTTACACTCCATGGTATCGC TCCTGGTTGGCCTTCTTGAAAGAGAACCCGGATTACCTCGAGGTCTCTGAGGAGCCCGGGTCAAATCCAGGCAAC GCGCGCCATCAATTGAAGGATTTATTCAATTGCAAGGTGCCAGCCGCACCTAAAACCCATACCTTGTCGGGCGAA GACCAGAAACGCTTTGAGGGACTTTACCCAGCCGGAGAGCATGAAGCCCTCCGGCGGCTGGACAAATTTCTCGAG GAGAAAGGTAGAAAGTACGAGGAGTTGCGGAGCATGTTGCCCGGTGAGCACACTTCGGTGTTGAGTCCTTACATT GCATGCGGAGCGCTGAGCGTAAGGACTGCTGTCGCGACAGCGAAGAGGGTCAACAAAGGCCATCTCGATCGATAC GATCCCGGTTACATGACGTGGATCAGCGAGTTGGCCTGGCGGGACTTCTACAAACATGTCCTGGTGAACTGGCCC TTCATCTGTATGAACAAATGCTTCAAGCCCGAACATACCGATATTGAATGGGAGTACGATAAGGATCAGTTCCAA GCGTGGTGCGATGGCAAGACAGGTTTTCCGATCGTCGACGCAGCAATGCGCCAGCTCCGCCACTGCGCCTGGATG CACAACCGCACGCGCATGGTTGTCTCATCGTTCCTTACCAAGGACTTAATGCTCGATTGGCGCCGTGGCGAGCGC TACTTTATGGAGAATCTAATCGACGGCGACTTCGCGTCCAATCACGGCGGGTGGGGGTTCGGGTCCAGTACTGGC GTGGATCCGCAACCATATTTCCGAATCTTCAATCCTCTTCGGCAGAGTGAGCGCTTCGACCCGGAGGGAGAGTAT ATCCGCCACTGGGTGCCAGAGCTGCGCGATGTGTCTGGTAAAGCCATCCATGAACCATATGCGAGGGGAGCCGCG GCTATTGCGCAGAAGAACGGCTACCCCAAGCCCATTGTGGACCATGCAGAGAGTCGAGATCGAGCGTTGAAGCGA TTCAAGAGTGTACTCCAGAAAGGGTGA |
| Transcript | >Pro_DTO377G3_2|g4485.t1 ATGCCACCGAAGAGGAAAGCTACCGAACCGGCAGCTGAAAAGCATGATGGCTTGAGTGCTAGCAAAAAAGGCCGA CCAGACTTGCACCAACCGCACCCGAACGCGAACCAAACCGAGGATTTCGGCATAGTCCTACGCCAGTTCTATCCG GCCGAGATGAGCAATGAGCGCTGCCGAGCATACACCGATGGCGAGCTGGAACGCCCTATTGAAACGCTACAGAGG GCTTGCCGAGAAACCGCCACCAAGCGCCAGTCGATCAACGTGGGTAATGCCGTGGTACATTGGTTCAAGAGCGAT CTCCGACTGCATGATAATAGGTCACTGTACACTGCCTACCAAACTGCGAAAGAAAACCAGATCCCGTTGATCGGC CTTTACATCGTCTCCCCCGAAGATTGGACTGCCCATTTGACTAGCCCTGCTCGGGTGGATTTCACGCTGCGCACC CTCGAGCGATTGCAACAGGACCTGGGGGAGTTGGATATCCCTCTGCACATGGAAACACAAGAGAAACGGAAGGCA ATCCCGAAACGGATTGTGGAATTGTGTCAACAGTGGGGTGCGAAGAACCTATATGCGAATATCGAGTATGAGGTA GATGAACTGCGACGCGAAGCTAAGCTTGTTAGACTTTGCGCGGATAATGATATTAATTTCGCTCCCACTCATGAC ACATGTGTGGTCACTCCGGGCGCGCTGGCTAGCCAGCAAGGGAAACAATATTCCGTTTACACTCCATGGTATCGC TCCTGGTTGGCCTTCTTGAAAGAGAACCCGGATTACCTCGAGGTCTCTGAGGAGCCCGGGTCAAATCCAGGCAAC GCGCGCCATCAATTGAAGGATTTATTCAATTGCAAGGTGCCAGCCGCACCTAAAACCCATACCTTGTCGGGCGAA GACCAGAAACGCTTTGAGGGACTTTACCCAGCCGGAGAGCATGAAGCCCTCCGGCGGCTGGACAAATTTCTCGAG GAGAAAGGTAGAAAGTACGAGGAGTTGCGGAGCATGTTGCCCGGTGAGCACACTTCGGTGTTGAGTCCTTACATT GCATGCGGAGCGCTGAGCGTAAGGACTGCTGTCGCGACAGCGAAGAGGGTCAACAAAGGCCATCTCGATCGATAC GATCCCGGTTACATGACGTGGATCAGCGAGTTGGCCTGGCGGGACTTCTACAAACATGTCCTGGTGAACTGGCCC TTCATCTGTATGAACAAATGCTTCAAGCCCGAACATACCGATATTGAATGGGAGTACGATAAGGATCAGTTCCAA GCGTGGTGCGATGGCAAGACAGGTTTTCCGATCGTCGACGCAGCAATGCGCCAGCTCCGCCACTGCGCCTGGATG CACAACCGCACGCGCATGGTTGTCTCATCGTTCCTTACCAAGGACTTAATGCTCGATTGGCGCCGTGGCGAGCGC TACTTTATGGAGAATCTAATCGACGGCGACTTCGCGTCCAATCACGGCGGGTGGGGGTTCGGGTCCAGTACTGGC GTGGATCCGCAACCATATTTCCGAATCTTCAATCCTCTTCGGCAGAGTGAGCGCTTCGACCCGGAGGGAGAGTAT ATCCGCCACTGGGTGCCAGAGCTGCGCGATGTGTCTGGTAAAGCCATCCATGAACCATATGCGAGGGGAGCCGCG GCTATTGCGCAGAAGAACGGCTACCCCAAGCCCATTGTGGACCATGCAGAGAGTCGAGATCGAGCGTTGAAGCGA TTCAAGAGTGTACTCCAGAAAGGGTGA |
| Gene | >Pro_DTO377G3_2|g4485.t1 ATGCCACCGAAGAGGAAAGCTACCGAACCGGCAGCTGAAAAGCATGATGGCTTGAGTGCTAGCAAAAAAGGCCGA CCAGACTTGCACCAACCGCACCCGAACGCGAACCAAACCGAGGATTTCGGCATAGTCCTACGCCAGTTCTATCCG GCCGAGATGAGCAATGAGCGCTGCCGAGCATACACCGATGGCGAGCTGGAACGCCCTATTGAAACGCTACAGAGG GCTTGCCGAGAAACCGCCACCAAGCGCCAGTCGATCAACGTGGGTAATGCCGTGGTACATTGGTTCAAGAGCGAT CTCCGACTGCATGATAATAGGTCACTGTACACTGCCTACCAAACTGCGAAAGAAAACCAGATCCCGTTGATCGGC CTTTACATCGTCTCCCCCGAAGATTGGACTGCCCATTTGACTAGCCCTGCTCGGGTGGATTTCACGCTGCGCACC CTCGAGCGATTGCAACAGGACCTGGGGGAGTTGGATATCCCTCTGCACATGGAAACACAAGAGAAACGGAAGGCA ATCCCGAAACGGATTGTGGAATTGTGTCAACAGTGGGGTGCGAAGAACCTATATGCGAATATCGAGTATGAGGTA GATGAACTGCGACGCGAAGCTAAGCTTGTTAGACTTTGCGCGGATAATGATATTAATTTCGCTCCCACTCATGAC ACATGTGTGGTCACTCCGGGCGCGCTGGCTAGCCAGCAAGGGAAACAATATTCCGTTTACACTCCATGGTATCGC TCCTGGTTGGCCTTCTTGAAAGAGAACCCGGATTACCTCGAGGTCTCTGAGGAGCCCGGGTCAAATCCAGGCAAC GCGCGCCATCAATTGAAGGATTTATTCAATTGCAAGGTGCCAGCCGCACCTAAAACCCATACCTTGTCGGGCGAA GACCAGAAACGCTTTGAGGGACTTTACCCAGCCGGAGAGCATGAAGCCCTCCGGCGGCTGGACAAATTTCTCGAG GAGAAAGGTAGAAAGTACGAGGAGTTGCGGAGCATGTTGCCCGGTGAGCACACTTCGGTGTTGAGTCCTTACATT GCATGCGGAGCGCTGAGCGTAAGGACTGCTGTCGCGACAGCGAAGAGGGTCAACAAAGGCCATCTCGATCGATAC GATCCCGGTTACATGACGTGGATCAGCGAGTTGGCCTGGCGGGACTTCTACAAACATGTCCTGGTGAACTGGCCC TTCATCTGGTAAGTTATCTCCTAGGCCAACGGGTTTCCCATTCTAATGCAAAGACTTCCTGTAGTATGAACAAAT GCTTCAAGCCCGAACATACCGATATTGAATGGGAGTACGATAAGGATCAGTTCCAAGCGTGGTGCGATGGCAAGA CAGGTTTTCCGATCGTCGACGCAGCAATGCGCCAGCTCCGCCACTGCGCCTGGATGCACAACCGCACGCGCATGG TTGTCTCATCGTTCCTTACCAAGGACTTAATGCTCGATTGGCGCCGTGGCGAGCGCTACTTTATGGAGAATCTAA TCGACGGCGACTTCGCGTCCAATCACGGCGGGTGGGGGTTCGGGTCCAGTACTGGCGTGGATCCGCAACCATATT TCCGAATCTTCAATCCTCTTCGGCAGAGTGAGCGCTTCGACCCGGAGGGAGAGTATATCCGCCACTGGGTGCCAG AGCTGCGCGATGTGTCTGGTAAAGCCATCCATGAACCATATGCGAGGGGAGCCGCGGCTATTGCGCAGAAGAACG GCTACCCCAAGCCCATTGTGGACCATGCAGAGAGTCGAGATCGAGCGTTGAAGCGATTCAAGAGTGTACTCCAGA AAGGGTGA |