© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4470.t1 |
| Gene name | |
| Location | scaffold_09:334657..335902 |
| Strand | - |
| Gene length (bp) | 1245 |
| Transcript length (bp) | 1194 |
| Coding sequence length (bp) | 1194 |
| Protein length (aa) | 398 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00441 | Acyl-CoA_dh_1 | Acyl-CoA dehydrogenase, C-terminal domain | 1.1E-31 | 236 | 389 |
| PF02771 | Acyl-CoA_dh_N | Acyl-CoA dehydrogenase, N-terminal domain | 4.0E-18 | 7 | 119 |
| PF02770 | Acyl-CoA_dh_M | Acyl-CoA dehydrogenase, middle domain | 1.8E-18 | 124 | 223 |
| PF08028 | Acyl-CoA_dh_2 | Acyl-CoA dehydrogenase, C-terminal domain | 1.1E-14 | 253 | 370 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 12 | (None) |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.12 | 1.52 | 8.71 |
| 5d_25C | Five days - 25 degrees Celsius | 4.20 | 1.13 | 7.27 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.61 | 1.25 | 7.97 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.11 | 0.61 | 5.62 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.75 | 1.28 | 8.22 |
| 7d_30C | Seven days - 30 degrees Celsius | 6.88 | 2.22 | 11.55 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.697868 | no |
| 3d_25C | 7d_25C | 0.856525 | no |
| 3d_25C | 7d_15C | 0.901071 | no |
| 3d_25C | 7d_30C | 0.505218 | no |
| 3d_25C | 10d_25C | 0.243886 | no |
| 5d_25C | 7d_25C | 0.881633 | no |
| 5d_25C | 7d_15C | 0.837179 | no |
| 5d_25C | 7d_30C | 0.243279 | no |
| 5d_25C | 10d_25C | 0.553785 | no |
| 7d_25C | 7d_15C | 0.966057 | no |
| 7d_25C | 7d_30C | 0.362711 | no |
| 7d_25C | 10d_25C | 0.414475 | no |
| 7d_15C | 7d_30C | 0.410323 | no |
| 7d_15C | 10d_25C | 0.372938 | no |
| 7d_30C | 10d_25C | 0.045756 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 6260 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4470.t1 MGMTGFTEEQLTVREAISHICSKFPNTYWQERDQQEKDPKEFHAALAKDGWLGIALPESLGGAGLGISEATMMMQ TITQSGAGMAGAQAIHANVYATQPLAKFGTKEQLETTIPNIINGTWRTCFGVTEPNTGLETLKLTTLASKTADGY SVTGQKIWITCAQVASKMILLARTTPLEEVKKTSEGLSLFCIDLDRDSPGLDLRKIKKMGGRAVDANEVFFDNYK IPANTLIGEENQGFKIILHGMNAERCLLAGEALGLGYAALEKASEYAKDRVVFGRPIGQNQGVAHPLADAFMKLE AAKLATYHAARLYDTNDGSVPFHEIGVACNSAKYLAAEAAFTACERAVLAHGGMGYAVEYDVERYMRDCFVPRIA PVSREMILNYVSEKVLGLPRSY* |
| Coding | >Pro_DTO377G3_2|g4470.t1 ATGGGGATGACTGGCTTTACGGAAGAGCAGCTTACAGTCCGCGAAGCGATCTCCCATATTTGTTCCAAATTCCCA AATACATATTGGCAGGAGCGTGATCAACAAGAGAAAGATCCAAAGGAATTCCATGCAGCATTGGCTAAAGATGGA TGGCTTGGCATTGCTTTGCCCGAATCCCTCGGAGGCGCTGGTCTAGGTATCTCCGAGGCCACAATGATGATGCAG ACTATCACACAGTCTGGCGCAGGTATGGCTGGTGCTCAGGCCATTCACGCCAACGTCTATGCGACACAGCCATTG GCCAAGTTTGGCACCAAGGAACAACTAGAGACAACCATCCCGAATATTATCAACGGCACATGGCGCACATGCTTT GGTGTCACCGAGCCAAACACTGGCCTTGAGACCCTCAAACTCACAACCTTGGCTAGCAAAACCGCTGACGGATAT TCGGTCACCGGCCAGAAGATCTGGATTACCTGTGCGCAAGTGGCTTCAAAGATGATCCTTCTCGCCCGAACTACA CCTCTCGAAGAAGTTAAGAAGACCAGCGAGGGTCTCTCCTTATTTTGTATCGATCTAGACCGTGATAGCCCTGGC TTGGATCTGCGCAAGATCAAGAAGATGGGTGGACGCGCTGTGGATGCCAACGAGGTCTTCTTTGATAATTATAAG ATTCCTGCAAATACATTAATTGGCGAGGAGAACCAAGGCTTCAAGATTATCCTCCACGGCATGAATGCAGAGAGA TGTCTTTTGGCCGGTGAAGCACTTGGTCTTGGATATGCCGCCCTTGAAAAAGCCTCGGAGTACGCTAAGGACCGT GTTGTCTTTGGACGGCCAATTGGTCAGAACCAGGGTGTGGCGCATCCATTGGCTGATGCTTTCATGAAACTGGAG GCGGCAAAGCTGGCTACCTACCACGCAGCACGTCTCTATGATACCAACGATGGATCAGTGCCTTTCCATGAAATT GGTGTCGCGTGTAACAGTGCCAAGTATTTGGCTGCAGAGGCTGCTTTCACGGCGTGTGAGCGGGCAGTTCTGGCG CATGGTGGTATGGGATATGCGGTTGAGTACGATGTCGAACGATATATGCGCGATTGTTTCGTGCCTCGTATCGCA CCTGTGAGTCGGGAGATGATCTTGAATTATGTGAGCGAGAAGGTACTCGGTTTACCTAGAAGCTACTAG |
| Transcript | >Pro_DTO377G3_2|g4470.t1 ATGGGGATGACTGGCTTTACGGAAGAGCAGCTTACAGTCCGCGAAGCGATCTCCCATATTTGTTCCAAATTCCCA AATACATATTGGCAGGAGCGTGATCAACAAGAGAAAGATCCAAAGGAATTCCATGCAGCATTGGCTAAAGATGGA TGGCTTGGCATTGCTTTGCCCGAATCCCTCGGAGGCGCTGGTCTAGGTATCTCCGAGGCCACAATGATGATGCAG ACTATCACACAGTCTGGCGCAGGTATGGCTGGTGCTCAGGCCATTCACGCCAACGTCTATGCGACACAGCCATTG GCCAAGTTTGGCACCAAGGAACAACTAGAGACAACCATCCCGAATATTATCAACGGCACATGGCGCACATGCTTT GGTGTCACCGAGCCAAACACTGGCCTTGAGACCCTCAAACTCACAACCTTGGCTAGCAAAACCGCTGACGGATAT TCGGTCACCGGCCAGAAGATCTGGATTACCTGTGCGCAAGTGGCTTCAAAGATGATCCTTCTCGCCCGAACTACA CCTCTCGAAGAAGTTAAGAAGACCAGCGAGGGTCTCTCCTTATTTTGTATCGATCTAGACCGTGATAGCCCTGGC TTGGATCTGCGCAAGATCAAGAAGATGGGTGGACGCGCTGTGGATGCCAACGAGGTCTTCTTTGATAATTATAAG ATTCCTGCAAATACATTAATTGGCGAGGAGAACCAAGGCTTCAAGATTATCCTCCACGGCATGAATGCAGAGAGA TGTCTTTTGGCCGGTGAAGCACTTGGTCTTGGATATGCCGCCCTTGAAAAAGCCTCGGAGTACGCTAAGGACCGT GTTGTCTTTGGACGGCCAATTGGTCAGAACCAGGGTGTGGCGCATCCATTGGCTGATGCTTTCATGAAACTGGAG GCGGCAAAGCTGGCTACCTACCACGCAGCACGTCTCTATGATACCAACGATGGATCAGTGCCTTTCCATGAAATT GGTGTCGCGTGTAACAGTGCCAAGTATTTGGCTGCAGAGGCTGCTTTCACGGCGTGTGAGCGGGCAGTTCTGGCG CATGGTGGTATGGGATATGCGGTTGAGTACGATGTCGAACGATATATGCGCGATTGTTTCGTGCCTCGTATCGCA CCTGTGAGTCGGGAGATGATCTTGAATTATGTGAGCGAGAAGGTACTCGGTTTACCTAGAAGCTACTAG |
| Gene | >Pro_DTO377G3_2|g4470.t1 ATGGGGATGACTGGCTTTACGGAAGAGCAGCTTACAGTCCGCGAAGCGATCTCCCATATTTGTTCCAAATTCCCA AATACATATTGGCAGGAGCGTGATCAACAAGAGAAAGATCCAAAGGAATTCCATGCAGCATTGGCTAAAGATGGA TGGCTTGGCATTGCTTTGCCCGAATCCCTCGGAGGCGCTGGTCTAGGTACAGTTGCACAGATTTCTTATTCTCAT CCATATTTCTGACCTTGTTCAGGTATCTCCGAGGCCACAATGATGATGCAGACTATCACACAGTCTGGCGCAGGT ATGGCTGGTGCTCAGGCCATTCACGCCAACGTCTATGCGACACAGCCATTGGCCAAGTTTGGCACCAAGGAACAA CTAGAGACAACCATCCCGAATATTATCAACGGCACATGGCGCACATGCTTTGGTGTCACCGAGCCAAACACTGGC CTTGAGACCCTCAAACTCACAACCTTGGCTAGCAAAACCGCTGACGGATATTCGGTCACCGGCCAGAAGATCTGG ATTACCTGTGCGCAAGTGGCTTCAAAGATGATCCTTCTCGCCCGAACTACACCTCTCGAAGAAGTTAAGAAGACC AGCGAGGGTCTCTCCTTATTTTGTATCGATCTAGACCGTGATAGCCCTGGCTTGGATCTGCGCAAGATCAAGAAG ATGGGTGGACGCGCTGTGGATGCCAACGAGGTCTTCTTTGATAATTATAAGATTCCTGCAAATACATTAATTGGC GAGGAGAACCAAGGCTTCAAGATTATCCTCCACGGCATGAATGCAGAGAGATGTCTTTTGGCCGGTGAAGCACTT GGTCTTGGATATGCCGCCCTTGAAAAAGCCTCGGAGTACGCTAAGGACCGTGTTGTCTTTGGACGGCCAATTGGT CAGAACCAGGGTGTGGCGCATCCATTGGCTGATGCTTTCATGAAACTGGAGGCGGCAAAGCTGGCTACCTACCAC GCAGCACGTCTCTATGATACCAACGATGGATCAGTGCCTTTCCATGAAATTGGTGTCGCGTGTAACAGTGCCAAG TATTTGGCTGCAGAGGCTGCTTTCACGGCGTGTGAGCGGGCAGTTCTGGCGCATGGTGGTATGGGATATGCGGTT GAGTACGATGTCGAACGATATATGCGCGATTGTTTCGTGCCTCGTATCGCACCTGTGAGTCGGGAGATGATCTTG AATTATGTGAGCGAGAAGGTACTCGGTTTACCTAGAAGCTACTAG |