© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g446.t1 |
| Gene name | |
| Location | scaffold_01:1128971..1130997 |
| Strand | - |
| Gene length (bp) | 2026 |
| Transcript length (bp) | 1905 |
| Coding sequence length (bp) | 1905 |
| Protein length (aa) | 635 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01494 | FAD_binding_3 | FAD binding domain | 2.2E-72 | 7 | 365 |
| PF07976 | Phe_hydrox_dim | Phenol hydroxylase, C-terminal dimerisation domain | 8.6E-36 | 410 | 586 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0071949 | FAD binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 38.22 | 22.87 | 53.57 |
| 5d_25C | Five days - 25 degrees Celsius | 36.92 | 22.05 | 51.79 |
| 7d_25C | Seven days - 25 degrees Celsius | 39.21 | 23.53 | 54.90 |
| 10d_25C | Ten days - 25 degrees Celsius | 36.54 | 21.85 | 51.23 |
| 7d_15C | Seven days - 15 degrees Celsius | 37.15 | 21.98 | 52.32 |
| 7d_30C | Seven days - 30 degrees Celsius | 37.47 | 22.35 | 52.58 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.919259 | no |
| 3d_25C | 7d_25C | 0.939532 | no |
| 3d_25C | 7d_15C | 0.935970 | no |
| 3d_25C | 7d_30C | 0.955747 | no |
| 3d_25C | 10d_25C | 0.896116 | no |
| 5d_25C | 7d_25C | 0.848775 | no |
| 5d_25C | 7d_15C | 0.986382 | no |
| 5d_25C | 7d_30C | 0.967179 | no |
| 5d_25C | 10d_25C | 0.977802 | no |
| 7d_25C | 7d_15C | 0.872198 | no |
| 7d_25C | 7d_30C | 0.895377 | no |
| 7d_25C | 10d_25C | 0.827396 | no |
| 7d_15C | 7d_30C | 0.981265 | no |
| 7d_15C | 10d_25C | 0.964764 | no |
| 7d_30C | 10d_25C | 0.946391 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g446.t1 MVQQENYDIVIVGAGPVGLLLSLCMSRWGYKVKHIDNRPVPTATGRADGIQPRSTEILRNLGLKRSIMAYEPAKV YDVAFWDPKADGSGIGRTGSWPSCPRFIDTRYPFTTLVHQGKIERVFLDEIKKAGTTVERPWTIVGFKNDGANAD YPVEVNLKCLDTNVIENVRAKYLFSGEGARSFVREQLGIKIHHKDPIAYVWGVMDGVVRTNFPDIETKCTIHSDA GSIMVIPREDNMVRLYVQIASSTDADWNPRKTATVEEVQQTAKNILKPYWIEWDRVEWYSVYPIGQGIAEKYTLD ERVFMGGDACHTHSPKAGQGMNTAFHDALNMAWKIHAVESGFANRSILSTYESERKDIAETLLNFDSKYAALFSK RRPSAGEVGSASDTTVGAGGEEDEFVKTFKSSCEFTSGYGVAYRPNIFTWDVSHPAKSPLFKIPGVHLTPGRAFT PTTVTRLADSNFVELEQEVPANGAFRIFIFAGNQFKTKKAIADLAANLEKERSFLSVYRRSDITDVSFFERHNPH SKLFTLSVIYAGSKNNIDMDSIPQVLRDYHHHLYADDIPDIRVPQAQFAAHEKLGFDAEKGGVVVTRPDSHVACT VQLVEGSGTVDALNEFFNAFSTKPLGQDSQQSRL* |
| Coding | >Pro_DTO377G3_2|g446.t1 ATGGTCCAACAAGAGAATTATGATATTGTCATTGTGGGCGCCGGCCCCGTCGGTCTGCTCTTGTCCCTCTGTATG TCACGATGGGGCTACAAGGTGAAGCATATCGACAACCGCCCAGTGCCGACCGCTACTGGTCGCGCTGACGGTATT CAGCCGCGATCTACCGAGATCCTGCGCAACCTTGGCTTGAAGCGCTCGATCATGGCTTACGAGCCTGCCAAGGTG TACGACGTTGCCTTCTGGGATCCCAAAGCTGACGGCTCTGGCATCGGCCGTACTGGCAGCTGGCCTAGTTGCCCC CGCTTTATTGATACCCGCTACCCTTTCACCACCCTGGTTCACCAGGGCAAGATCGAGCGCGTGTTCTTGGATGAA ATCAAGAAGGCTGGCACAACTGTCGAGCGGCCATGGACTATTGTTGGCTTCAAGAACGATGGTGCGAACGCTGAT TACCCTGTTGAAGTCAATTTGAAGTGCTTGGATACGAATGTTATCGAGAATGTGCGCGCCAAGTACTTGTTTAGT GGCGAGGGTGCCCGCAGCTTTGTCCGTGAGCAGCTGGGCATCAAGATCCACCACAAGGATCCCATTGCCTATGTT TGGGGTGTCATGGACGGTGTCGTGCGCACCAACTTCCCTGACATTGAGACAAAATGCACCATCCACTCCGACGCT GGCTCAATCATGGTCATTCCCCGCGAGGACAATATGGTCCGCCTCTATGTCCAGATCGCCTCCTCCACCGACGCC GATTGGAACCCCCGAAAGACTGCCACTGTTGAGGAGGTCCAGCAGACTGCGAAGAACATTCTGAAGCCATACTGG ATTGAGTGGGACCGGGTTGAGTGGTACTCTGTCTACCCCATTGGACAAGGTATTGCTGAAAAGTATACCCTTGAC GAGCGAGTCTTTATGGGTGGCGATGCTTGCCACACTCATAGCCCCAAGGCCGGCCAGGGAATGAACACTGCTTTC CATGACGCACTCAACATGGCCTGGAAGATCCACGCCGTGGAGAGTGGGTTTGCCAACCGTTCTATTCTCAGCACC TACGAGAGCGAACGCAAGGATATCGCTGAGACGTTGTTGAACTTCGATTCCAAGTACGCAGCCCTATTCTCCAAG CGCCGTCCTTCTGCCGGCGAGGTCGGTTCTGCCAGCGACACCACCGTGGGTGCTGGTGGGGAGGAGGACGAATTC GTCAAGACCTTCAAGTCATCTTGCGAGTTCACCAGTGGATACGGAGTGGCCTACCGGCCCAATATTTTCACCTGG GACGTGAGCCACCCTGCCAAGTCCCCTCTGTTCAAGATTCCCGGTGTTCATCTGACCCCGGGTCGCGCTTTCACC CCGACCACTGTCACCCGTCTTGCCGATTCCAACTTTGTCGAGCTTGAGCAGGAAGTGCCCGCTAACGGTGCATTC CGCATCTTCATCTTCGCTGGCAATCAGTTCAAGACTAAGAAGGCCATTGCCGACCTGGCAGCCAACCTAGAGAAA GAACGCTCGTTCCTTTCGGTGTATCGCCGGTCTGATATTACCGATGTGTCATTCTTCGAGCGCCATAACCCTCAC TCCAAGCTCTTCACCCTCTCTGTGATCTATGCAGGCTCCAAGAACAACATCGATATGGACTCCATCCCCCAGGTC CTACGTGACTACCACCACCACCTCTATGCCGATGATATCCCCGATATACGCGTTCCTCAGGCTCAATTTGCAGCC CACGAGAAGCTCGGCTTTGATGCTGAGAAGGGTGGTGTTGTCGTCACCCGTCCTGACAGCCACGTTGCTTGCACC GTGCAGCTGGTTGAGGGAAGTGGCACTGTTGACGCTCTCAACGAGTTCTTCAATGCGTTCTCAACGAAGCCTCTC GGCCAAGATTCTCAACAGAGCCGTTTGTGA |
| Transcript | >Pro_DTO377G3_2|g446.t1 ATGGTCCAACAAGAGAATTATGATATTGTCATTGTGGGCGCCGGCCCCGTCGGTCTGCTCTTGTCCCTCTGTATG TCACGATGGGGCTACAAGGTGAAGCATATCGACAACCGCCCAGTGCCGACCGCTACTGGTCGCGCTGACGGTATT CAGCCGCGATCTACCGAGATCCTGCGCAACCTTGGCTTGAAGCGCTCGATCATGGCTTACGAGCCTGCCAAGGTG TACGACGTTGCCTTCTGGGATCCCAAAGCTGACGGCTCTGGCATCGGCCGTACTGGCAGCTGGCCTAGTTGCCCC CGCTTTATTGATACCCGCTACCCTTTCACCACCCTGGTTCACCAGGGCAAGATCGAGCGCGTGTTCTTGGATGAA ATCAAGAAGGCTGGCACAACTGTCGAGCGGCCATGGACTATTGTTGGCTTCAAGAACGATGGTGCGAACGCTGAT TACCCTGTTGAAGTCAATTTGAAGTGCTTGGATACGAATGTTATCGAGAATGTGCGCGCCAAGTACTTGTTTAGT GGCGAGGGTGCCCGCAGCTTTGTCCGTGAGCAGCTGGGCATCAAGATCCACCACAAGGATCCCATTGCCTATGTT TGGGGTGTCATGGACGGTGTCGTGCGCACCAACTTCCCTGACATTGAGACAAAATGCACCATCCACTCCGACGCT GGCTCAATCATGGTCATTCCCCGCGAGGACAATATGGTCCGCCTCTATGTCCAGATCGCCTCCTCCACCGACGCC GATTGGAACCCCCGAAAGACTGCCACTGTTGAGGAGGTCCAGCAGACTGCGAAGAACATTCTGAAGCCATACTGG ATTGAGTGGGACCGGGTTGAGTGGTACTCTGTCTACCCCATTGGACAAGGTATTGCTGAAAAGTATACCCTTGAC GAGCGAGTCTTTATGGGTGGCGATGCTTGCCACACTCATAGCCCCAAGGCCGGCCAGGGAATGAACACTGCTTTC CATGACGCACTCAACATGGCCTGGAAGATCCACGCCGTGGAGAGTGGGTTTGCCAACCGTTCTATTCTCAGCACC TACGAGAGCGAACGCAAGGATATCGCTGAGACGTTGTTGAACTTCGATTCCAAGTACGCAGCCCTATTCTCCAAG CGCCGTCCTTCTGCCGGCGAGGTCGGTTCTGCCAGCGACACCACCGTGGGTGCTGGTGGGGAGGAGGACGAATTC GTCAAGACCTTCAAGTCATCTTGCGAGTTCACCAGTGGATACGGAGTGGCCTACCGGCCCAATATTTTCACCTGG GACGTGAGCCACCCTGCCAAGTCCCCTCTGTTCAAGATTCCCGGTGTTCATCTGACCCCGGGTCGCGCTTTCACC CCGACCACTGTCACCCGTCTTGCCGATTCCAACTTTGTCGAGCTTGAGCAGGAAGTGCCCGCTAACGGTGCATTC CGCATCTTCATCTTCGCTGGCAATCAGTTCAAGACTAAGAAGGCCATTGCCGACCTGGCAGCCAACCTAGAGAAA GAACGCTCGTTCCTTTCGGTGTATCGCCGGTCTGATATTACCGATGTGTCATTCTTCGAGCGCCATAACCCTCAC TCCAAGCTCTTCACCCTCTCTGTGATCTATGCAGGCTCCAAGAACAACATCGATATGGACTCCATCCCCCAGGTC CTACGTGACTACCACCACCACCTCTATGCCGATGATATCCCCGATATACGCGTTCCTCAGGCTCAATTTGCAGCC CACGAGAAGCTCGGCTTTGATGCTGAGAAGGGTGGTGTTGTCGTCACCCGTCCTGACAGCCACGTTGCTTGCACC GTGCAGCTGGTTGAGGGAAGTGGCACTGTTGACGCTCTCAACGAGTTCTTCAATGCGTTCTCAACGAAGCCTCTC GGCCAAGATTCTCAACAGAGCCGTTTGTGA |
| Gene | >Pro_DTO377G3_2|g446.t1 ATGGTCCAACAAGAGAATTATGATATTGTCATTGTGGGCGCCGGCCCCGTCGGTCTGCTCTTGTCCCTCTGTATG TCACGATGGGGCTACAAGGTGAAGCATATCGACAACCGCCCAGTGCCGACCGCTACTGGTCGCGCTGACGGTATT CAGCCGCGATCTACCGAGATCCTGCGCAACCTTGGCTTGAAGCGCTCGATCATGGCTTACGAGCCTGCCAAGGTG TACGACGTTGCCTTCTGGGATCCCAAAGCTGACGGCTCTGGCATCGGCCGTACTGGCAGCTGGCCTAGTTGCCCC CGCTTTATTGATACCCGCTACCCTTTCACCACCCTGGTTCACCAGGGCAAGATCGAGCGCGTGTTCTTGGATGAA ATCAAGAAGGCTGGCACAACTGTCGAGCGGCCATGGACTATTGTTGGCTTCAAGAACGATGGTGCGAACGCTGAT TACCCTGTTGAAGTCAATTTGAAGTGCTTGGATACGAATGTTATCGAGAATGTGCGCGCCAAGTACTTGTTTAGT GGCGAGGGTGCCCGCAGCTTTGTCCGTGAGCAGCTGGGCATCAAGATCCACCACAAGGATCCCATTGCCTATGTT TGGGGTGTCATGGACGGTGTCGTGCGCACCAACTTCCCTGACATTGAGGTGGGCATGCCTAACAAGAACCAATGT CACGTATTTCTATGTTTCTAATGCGTTAGTATACAGACAAAATGCACCATCCACTCCGACGCTGGCTCAATCATG GTCATTCCCCGCGAGGACAATATGGTCCGCCTCTATGTCCAGATCGCCTCCTCCACCGACGCCGATTGGAACCCC CGAAAGACTGCCACTGTTGAGGAGGTCCAGCAGACTGCGAAGAACATTCTGAAGCCATACTGGATTGAGTGGGAC CGGGTTGAGTGGTACTCTGTCTACCCCATTGGACAAGGTATTGCTGAAAAGTATACCCTTGACGAGCGAGTCTTT ATGGGTGGCGATGCTTGCCACACTCATAGCGTTGGTACCCCCCGTTAAAACCCCTGTTGCTCTCACAATATCGCT AACGCCCCTGAAGCCCAAGGCCGGCCAGGGAATGAACACTGCTTTCCATGACGCACTCAACATGGCCTGGAAGAT CCACGCCGTGGAGAGTGGGTTTGCCAACCGTTCTATTCTCAGCACCTACGAGAGCGAACGCAAGGATATCGCTGA GACGTTGTTGAACTTCGATTCCAAGTACGCAGCCCTATTCTCCAAGCGCCGTCCTTCTGCCGGCGAGGTCGGTTC TGCCAGCGACACCACCGTGGGTGCTGGTGGGGAGGAGGACGAATTCGTCAAGACCTTCAAGTCATCTTGCGAGTT CACCAGTGGATACGGAGTGGCCTACCGGCCCAATATTTTCACCTGGGACGTGAGCCACCCTGCCAAGTCCCCTCT GTTCAAGATTCCCGGTGTTCATCTGACCCCGGGTCGCGCTTTCACCCCGACCACTGTCACCCGTCTTGCCGATTC CAACTTTGTCGAGCTTGAGCAGGAAGTGCCCGCTAACGGTGCATTCCGCATCTTCATCTTCGCTGGCAATCAGTT CAAGACTAAGAAGGCCATTGCCGACCTGGCAGCCAACCTAGAGAAAGAACGCTCGTTCCTTTCGGTGTATCGCCG GTCTGATATTACCGATGTGTCATTCTTCGAGCGCCATAACCCTCACTCCAAGCTCTTCACCCTCTCTGTGATCTA TGCAGGCTCCAAGAACAACATCGATATGGACTCCATCCCCCAGGTCCTACGTGACTACCACCACCACCTCTATGC CGATGATATCCCCGATATACGCGTTCCTCAGGCTCAATTTGCAGCCCACGAGAAGCTCGGCTTTGATGCTGAGAA GGGTGGTGTTGTCGTCACCCGTCCTGACAGCCACGTTGCTTGCACCGTGCAGCTGGTTGAGGGAAGTGGCACTGT TGACGCTCTCAACGAGTTCTTCAATGCGTTCTCAACGAAGCCTCTCGGCCAAGATTCTCAACAGAGCCGTTTGTG A |