© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g4439.t1 |
| Gene name | |
| Location | scaffold_09:262330..263035 |
| Strand | - |
| Gene length (bp) | 705 |
| Transcript length (bp) | 705 |
| Coding sequence length (bp) | 705 |
| Protein length (aa) | 235 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13417 | GST_N_3 | Glutathione S-transferase, N-terminal domain | 5.1E-09 | 13 | 85 |
| PF02798 | GST_N | Glutathione S-transferase, N-terminal domain | 8.7E-09 | 6 | 79 |
| PF13409 | GST_N_2 | Glutathione S-transferase, N-terminal domain | 2.4E-08 | 13 | 79 |
| PF00043 | GST_C | Glutathione S-transferase, C-terminal domain | 6.3E-08 | 138 | 205 |
| PF13410 | GST_C_2 | Glutathione S-transferase, C-terminal domain | 8.8E-08 | 139 | 200 |
| PF14497 | GST_C_3 | Glutathione S-transferase, C-terminal domain | 1.6E-05 | 137 | 206 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0006749 | glutathione metabolic process | Yes |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006575 | cellular modified amino acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 29.62 | 12.89 | 46.35 |
| 5d_25C | Five days - 25 degrees Celsius | 45.44 | 22.16 | 68.72 |
| 7d_25C | Seven days - 25 degrees Celsius | 46.32 | 22.45 | 70.19 |
| 10d_25C | Ten days - 25 degrees Celsius | 67.84 | 36.49 | 99.19 |
| 7d_15C | Seven days - 15 degrees Celsius | 51.04 | 25.39 | 76.69 |
| 7d_30C | Seven days - 30 degrees Celsius | 46.60 | 22.90 | 70.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.159755 | no |
| 3d_25C | 7d_25C | 0.138010 | no |
| 3d_25C | 7d_15C | 0.057742 | no |
| 3d_25C | 7d_30C | 0.119819 | no |
| 3d_25C | 10d_25C | 0.001804 | yes |
| 5d_25C | 7d_25C | 0.967949 | no |
| 5d_25C | 7d_15C | 0.763542 | no |
| 5d_25C | 7d_30C | 0.955867 | no |
| 5d_25C | 10d_25C | 0.147715 | no |
| 7d_25C | 7d_15C | 0.807997 | no |
| 7d_25C | 7d_30C | 0.990147 | no |
| 7d_25C | 10d_25C | 0.176676 | no |
| 7d_15C | 7d_30C | 0.817114 | no |
| 7d_15C | 10d_25C | 0.334221 | no |
| 7d_30C | 10d_25C | 0.163666 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4439.t1 MPLTIHHLGRSQSERIVWLAEELGIDYDFVFHKRDPIFSPQSIKDLHPAGTAPVIEDDSSPFTKNKVVLAESGAI IDYIIAAYGEGRLARTPKDGDEYIHFLEWYHWANASLQPTLFRVLITRRLTSDPESVHVKMGNAKLERALSMVEA RLGETGSYLVGNDVTAADIMAICTLTTMRGFCPIEFDEEKHKNILAYLKRVGDRPAYQKAMKICEGEDFVPILGA KAEQFVFPY* |
| Coding | >Pro_DTO377G3_2|g4439.t1 ATGCCATTGACAATCCACCACCTTGGCCGCTCGCAATCAGAGCGCATCGTCTGGCTTGCCGAAGAACTTGGCATC GATTATGACTTCGTTTTCCACAAGCGCGACCCTATATTCTCCCCGCAATCAATCAAAGACCTGCATCCTGCCGGC ACTGCGCCGGTGATCGAAGACGACAGCTCTCCCTTCACAAAAAACAAGGTCGTGCTCGCTGAATCTGGCGCTATC ATTGATTACATTATCGCCGCCTACGGAGAGGGCCGTCTCGCGCGCACACCGAAAGACGGCGACGAATACATCCAT TTCCTGGAGTGGTACCACTGGGCGAATGCCTCCCTACAGCCAACCTTATTCCGTGTCCTGATAACCCGGCGCTTG ACCAGCGACCCGGAATCAGTGCACGTCAAGATGGGCAATGCGAAACTAGAGCGTGCGCTCTCAATGGTTGAGGCG AGACTCGGCGAAACCGGATCCTACCTCGTTGGGAATGACGTCACCGCCGCGGATATCATGGCAATCTGTACTCTC ACTACCATGAGAGGATTTTGTCCGATTGAGTTTGATGAGGAGAAGCATAAGAACATTCTAGCTTATCTCAAGCGT GTTGGTGATCGGCCTGCTTATCAAAAGGCCATGAAGATTTGTGAGGGTGAAGATTTCGTACCTATTCTTGGCGCA AAAGCTGAGCAGTTTGTATTCCCTTATTGA |
| Transcript | >Pro_DTO377G3_2|g4439.t1 ATGCCATTGACAATCCACCACCTTGGCCGCTCGCAATCAGAGCGCATCGTCTGGCTTGCCGAAGAACTTGGCATC GATTATGACTTCGTTTTCCACAAGCGCGACCCTATATTCTCCCCGCAATCAATCAAAGACCTGCATCCTGCCGGC ACTGCGCCGGTGATCGAAGACGACAGCTCTCCCTTCACAAAAAACAAGGTCGTGCTCGCTGAATCTGGCGCTATC ATTGATTACATTATCGCCGCCTACGGAGAGGGCCGTCTCGCGCGCACACCGAAAGACGGCGACGAATACATCCAT TTCCTGGAGTGGTACCACTGGGCGAATGCCTCCCTACAGCCAACCTTATTCCGTGTCCTGATAACCCGGCGCTTG ACCAGCGACCCGGAATCAGTGCACGTCAAGATGGGCAATGCGAAACTAGAGCGTGCGCTCTCAATGGTTGAGGCG AGACTCGGCGAAACCGGATCCTACCTCGTTGGGAATGACGTCACCGCCGCGGATATCATGGCAATCTGTACTCTC ACTACCATGAGAGGATTTTGTCCGATTGAGTTTGATGAGGAGAAGCATAAGAACATTCTAGCTTATCTCAAGCGT GTTGGTGATCGGCCTGCTTATCAAAAGGCCATGAAGATTTGTGAGGGTGAAGATTTCGTACCTATTCTTGGCGCA AAAGCTGAGCAGTTTGTATTCCCTTATTGA |
| Gene | >Pro_DTO377G3_2|g4439.t1 ATGCCATTGACAATCCACCACCTTGGCCGCTCGCAATCAGAGCGCATCGTCTGGCTTGCCGAAGAACTTGGCATC GATTATGACTTCGTTTTCCACAAGCGCGACCCTATATTCTCCCCGCAATCAATCAAAGACCTGCATCCTGCCGGC ACTGCGCCGGTGATCGAAGACGACAGCTCTCCCTTCACAAAAAACAAGGTCGTGCTCGCTGAATCTGGCGCTATC ATTGATTACATTATCGCCGCCTACGGAGAGGGCCGTCTCGCGCGCACACCGAAAGACGGCGACGAATACATCCAT TTCCTGGAGTGGTACCACTGGGCGAATGCCTCCCTACAGCCAACCTTATTCCGTGTCCTGATAACCCGGCGCTTG ACCAGCGACCCGGAATCAGTGCACGTCAAGATGGGCAATGCGAAACTAGAGCGTGCGCTCTCAATGGTTGAGGCG AGACTCGGCGAAACCGGATCCTACCTCGTTGGGAATGACGTCACCGCCGCGGATATCATGGCAATCTGTACTCTC ACTACCATGAGAGGATTTTGTCCGATTGAGTTTGATGAGGAGAAGCATAAGAACATTCTAGCTTATCTCAAGCGT GTTGGTGATCGGCCTGCTTATCAAAAGGCCATGAAGATTTGTGAGGGTGAAGATTTCGTACCTATTCTTGGCGCA AAAGCTGAGCAGTTTGTATTCCCTTATTGA |