© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4435.t1 |
| Gene name | |
| Location | scaffold_09:248047..250790 |
| Strand | - |
| Gene length (bp) | 2743 |
| Transcript length (bp) | 2424 |
| Coding sequence length (bp) | 2424 |
| Protein length (aa) | 808 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01644 | Chitin_synth_1 | Chitin synthase | 2.6E-68 | 121 | 289 |
| PF03142 | Chitin_synth_2 | Chitin synthase | 2.2E-21 | 266 | 444 |
| PF08407 | Chitin_synth_1N | Chitin synthase N-terminal | 4.3E-26 | 41 | 120 |
| PF13632 | Glyco_trans_2_3 | Glycosyl transferase family group 2 | 8.7E-09 | 269 | 494 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006031 | chitin biosynthetic process | Yes |
| GO:0004100 | chitin synthase activity | Yes |
| GO:1901073 | glucosamine-containing compound biosynthetic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0046349 | amino sugar biosynthetic process | No |
| GO:0008194 | UDP-glycosyltransferase activity | No |
| GO:0016758 | hexosyltransferase activity | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0016757 | glycosyltransferase activity | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0008152 | metabolic process | No |
| GO:1901071 | glucosamine-containing compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006040 | amino sugar metabolic process | No |
| GO:0006030 | chitin metabolic process | No |
| GO:0008375 | acetylglucosaminyltransferase activity | No |
| GO:1901137 | carbohydrate derivative biosynthetic process | No |
| GO:0006022 | aminoglycan metabolic process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0006023 | aminoglycan biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 462 | 479 | 17 |
| 2 | 486 | 508 | 22 |
| 3 | 523 | 545 | 22 |
| 4 | 557 | 579 | 22 |
| 5 | 605 | 627 | 22 |
| 6 | 634 | 656 | 22 |
| 7 | 734 | 756 | 22 |
| 8 | 769 | 791 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.67 | 0.03 | 1.31 |
| 5d_25C | Five days - 25 degrees Celsius | 0.16 | 0.00 | 0.40 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.22 | 0.00 | 0.48 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.14 | 0.00 | 0.35 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.13 | 0.00 | 0.34 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.56 | 0.01 | 1.12 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4435.t1 MESLDLPDQIRLHNLSHQGSAVSSSKESGRHKGSSIRRYPTRRIKLTQGSVLSINYPVPSPIRNAIQPEYRDAEG ELSEEFTQMRYTAATCDPDEFTLRNGYNLRPSMYNRHTELLIAVTYYNEDKVLTARTLHGVMQNVRDIVKLKKTE FWDRGGPAWQKIVVCLVFDGMDPCDKNTLDVLATIGVFQDGVMKQDVDGRETIAHVFEYTTQLSVTPKQELVRPY KDDPMNLPPVQMMFCLKKKNAKKINSHRWLFNAFGRILNPEICILIDAGTKPGPKSLLALWQAFYNDKNIGGACG EIHALLGHRWKKLLNPLVAAQNFEYKISNILDKPLESSFGYVSVLPGAFSAYRYRAIMGRPLEQYFHGDHTLAQK LGKKGIDGMNIFKKNMFLAEDRILCFELVAKAGNQWLLTYVKASKGETDVPERPAEFLSQRRRWLNGSFAASLYS VMHFNRIYKSGHGIIRLLLLHIQLIYNICQLVMTWLSLASYWLTSSVILDIVGTPSATNKFKGWPFGNDATPIVN NLLKIGYLTFLMLQFILALGNRPKGSKFLYTLSFVYFSVVQLYLLILSFYLVAQAMTPENLNFDFSHGFSALISG FFNSTGGLVLIALVSTYGIYFIASILYADPWHMLTSSWAYFLGMPSSINVLMVYAFCNWHDVSWGTKGSDAPEKL PSAQTKKDDETPFVEELDKPQVDIDEQFASTVKRALTPWQEPTENEGVALDDSYKAFRTNLVLLWTFSNGLLALC INNLSIDRLCLTSTSTTRTAWYFKIILLATSGLSIFRFFGALYFLVKTGVLCCISRH* |
| Coding | >Pro_DTO377G3_2|g4435.t1 ATGGAATCACTCGACCTTCCTGATCAGATCAGATTACACAACCTTTCTCACCAGGGGTCCGCTGTGTCCTCTTCC AAGGAGTCGGGACGACACAAGGGAAGTAGCATCCGTCGATATCCAACACGGCGGATCAAGTTGACACAAGGCTCG GTCTTGAGTATCAACTATCCGGTACCGAGTCCTATACGCAATGCTATCCAGCCAGAGTATCGAGATGCGGAGGGG GAACTTTCTGAAGAATTCACACAAATGAGATACACTGCCGCGACGTGTGATCCTGATGAATTTACGCTACGCAAT GGTTACAATCTCCGCCCTTCGATGTATAATCGGCACACTGAACTTCTCATTGCCGTCACATACTACAACGAAGAT AAAGTCCTGACCGCCCGAACCCTGCATGGGGTAATGCAAAATGTCCGAGACATCGTGAAATTGAAAAAGACAGAA TTTTGGGATCGGGGTGGTCCCGCATGGCAGAAGATTGTCGTCTGTCTTGTCTTCGATGGCATGGATCCCTGCGAT AAAAACACACTTGACGTCCTGGCGACTATTGGCGTTTTTCAAGATGGCGTGATGAAGCAAGATGTGGACGGAAGA GAAACGATCGCTCATGTTTTTGAATATACCACACAGTTGTCGGTTACGCCGAAGCAAGAGCTTGTGCGTCCATAC AAAGACGACCCTATGAATCTTCCCCCGGTACAAATGATGTTTTGCCTTAAGAAAAAGAATGCGAAGAAGATCAAC TCACATCGGTGGCTATTCAACGCATTTGGGCGCATTTTGAATCCGGAGATATGCATCTTGATTGACGCGGGCACA AAACCCGGGCCTAAGTCTTTGCTAGCCCTATGGCAGGCTTTCTACAACGATAAAAATATTGGTGGGGCCTGCGGT GAAATTCACGCGCTTCTTGGCCACCGATGGAAGAAGCTCCTCAATCCCTTGGTTGCAGCTCAAAATTTTGAATAC AAAATCTCCAATATCCTGGACAAGCCCTTAGAGAGCAGTTTTGGCTACGTCAGCGTACTTCCGGGGGCTTTCTCT GCCTATCGGTATCGCGCTATTATGGGCAGGCCTCTTGAGCAGTATTTTCATGGGGATCACACACTAGCTCAGAAG CTCGGTAAGAAAGGGATCGACGGAATGAATATCTTTAAGAAGAATATGTTTCTTGCAGAGGATCGTATCCTTTGC TTCGAATTAGTTGCTAAGGCTGGCAACCAGTGGCTACTTACATACGTGAAAGCATCGAAAGGGGAAACAGACGTC CCAGAACGACCAGCAGAGTTCCTAAGTCAACGGCGACGATGGCTGAATGGCTCTTTTGCAGCATCGTTATATTCA GTCATGCATTTCAATCGGATATATAAGAGTGGGCATGGTATCATTCGGTTGCTACTGCTTCATATCCAATTGATT TACAATATCTGCCAGTTAGTCATGACATGGCTTTCACTCGCATCCTACTGGCTCACTAGTTCCGTCATTTTGGAT ATTGTGGGGACACCAAGTGCGACCAACAAATTCAAAGGGTGGCCTTTTGGGAATGATGCTACCCCGATTGTCAAT AATCTGTTGAAGATCGGTTATCTGACATTTCTTATGCTTCAATTCATTCTAGCTCTCGGAAATCGACCAAAGGGA TCAAAGTTTCTGTACACGCTCTCCTTTGTCTACTTCTCTGTGGTCCAGCTCTATCTCCTCATTTTGTCGTTCTAT CTCGTTGCGCAGGCAATGACTCCCGAGAATCTCAATTTTGATTTCAGCCATGGGTTTTCGGCACTCATATCGGGC TTTTTCAACTCAACGGGTGGGCTTGTTTTGATTGCCTTGGTATCAACATACGGGATTTACTTCATTGCAAGTATA CTCTACGCCGACCCCTGGCATATGCTCACTTCCTCCTGGGCATATTTCCTTGGAATGCCTTCTTCGATCAATGTT CTGATGGTCTATGCATTTTGCAATTGGCATGATGTTTCATGGGGGACAAAGGGATCAGATGCACCCGAAAAACTG CCCTCAGCGCAAACCAAAAAGGATGATGAAACGCCTTTTGTCGAGGAACTTGACAAGCCTCAAGTCGACATTGAT GAACAATTCGCGTCAACTGTGAAGCGGGCCTTGACTCCCTGGCAAGAACCAACTGAGAACGAAGGGGTGGCCCTC GACGATTCATACAAAGCATTCCGAACGAATCTGGTGTTGCTATGGACATTCAGTAATGGTCTTCTGGCGCTGTGT ATTAACAACCTCAGCATCGACAGGCTTTGTCTAACGTCGACGTCTACAACTCGCACGGCATGGTATTTCAAGATT ATTCTGTTGGCCACTTCTGGTCTCTCAATCTTCCGATTCTTCGGGGCACTGTACTTCCTAGTGAAGACCGGAGTC TTGTGCTGCATTTCCAGGCACTGA |
| Transcript | >Pro_DTO377G3_2|g4435.t1 ATGGAATCACTCGACCTTCCTGATCAGATCAGATTACACAACCTTTCTCACCAGGGGTCCGCTGTGTCCTCTTCC AAGGAGTCGGGACGACACAAGGGAAGTAGCATCCGTCGATATCCAACACGGCGGATCAAGTTGACACAAGGCTCG GTCTTGAGTATCAACTATCCGGTACCGAGTCCTATACGCAATGCTATCCAGCCAGAGTATCGAGATGCGGAGGGG GAACTTTCTGAAGAATTCACACAAATGAGATACACTGCCGCGACGTGTGATCCTGATGAATTTACGCTACGCAAT GGTTACAATCTCCGCCCTTCGATGTATAATCGGCACACTGAACTTCTCATTGCCGTCACATACTACAACGAAGAT AAAGTCCTGACCGCCCGAACCCTGCATGGGGTAATGCAAAATGTCCGAGACATCGTGAAATTGAAAAAGACAGAA TTTTGGGATCGGGGTGGTCCCGCATGGCAGAAGATTGTCGTCTGTCTTGTCTTCGATGGCATGGATCCCTGCGAT AAAAACACACTTGACGTCCTGGCGACTATTGGCGTTTTTCAAGATGGCGTGATGAAGCAAGATGTGGACGGAAGA GAAACGATCGCTCATGTTTTTGAATATACCACACAGTTGTCGGTTACGCCGAAGCAAGAGCTTGTGCGTCCATAC AAAGACGACCCTATGAATCTTCCCCCGGTACAAATGATGTTTTGCCTTAAGAAAAAGAATGCGAAGAAGATCAAC TCACATCGGTGGCTATTCAACGCATTTGGGCGCATTTTGAATCCGGAGATATGCATCTTGATTGACGCGGGCACA AAACCCGGGCCTAAGTCTTTGCTAGCCCTATGGCAGGCTTTCTACAACGATAAAAATATTGGTGGGGCCTGCGGT GAAATTCACGCGCTTCTTGGCCACCGATGGAAGAAGCTCCTCAATCCCTTGGTTGCAGCTCAAAATTTTGAATAC AAAATCTCCAATATCCTGGACAAGCCCTTAGAGAGCAGTTTTGGCTACGTCAGCGTACTTCCGGGGGCTTTCTCT GCCTATCGGTATCGCGCTATTATGGGCAGGCCTCTTGAGCAGTATTTTCATGGGGATCACACACTAGCTCAGAAG CTCGGTAAGAAAGGGATCGACGGAATGAATATCTTTAAGAAGAATATGTTTCTTGCAGAGGATCGTATCCTTTGC TTCGAATTAGTTGCTAAGGCTGGCAACCAGTGGCTACTTACATACGTGAAAGCATCGAAAGGGGAAACAGACGTC CCAGAACGACCAGCAGAGTTCCTAAGTCAACGGCGACGATGGCTGAATGGCTCTTTTGCAGCATCGTTATATTCA GTCATGCATTTCAATCGGATATATAAGAGTGGGCATGGTATCATTCGGTTGCTACTGCTTCATATCCAATTGATT TACAATATCTGCCAGTTAGTCATGACATGGCTTTCACTCGCATCCTACTGGCTCACTAGTTCCGTCATTTTGGAT ATTGTGGGGACACCAAGTGCGACCAACAAATTCAAAGGGTGGCCTTTTGGGAATGATGCTACCCCGATTGTCAAT AATCTGTTGAAGATCGGTTATCTGACATTTCTTATGCTTCAATTCATTCTAGCTCTCGGAAATCGACCAAAGGGA TCAAAGTTTCTGTACACGCTCTCCTTTGTCTACTTCTCTGTGGTCCAGCTCTATCTCCTCATTTTGTCGTTCTAT CTCGTTGCGCAGGCAATGACTCCCGAGAATCTCAATTTTGATTTCAGCCATGGGTTTTCGGCACTCATATCGGGC TTTTTCAACTCAACGGGTGGGCTTGTTTTGATTGCCTTGGTATCAACATACGGGATTTACTTCATTGCAAGTATA CTCTACGCCGACCCCTGGCATATGCTCACTTCCTCCTGGGCATATTTCCTTGGAATGCCTTCTTCGATCAATGTT CTGATGGTCTATGCATTTTGCAATTGGCATGATGTTTCATGGGGGACAAAGGGATCAGATGCACCCGAAAAACTG CCCTCAGCGCAAACCAAAAAGGATGATGAAACGCCTTTTGTCGAGGAACTTGACAAGCCTCAAGTCGACATTGAT GAACAATTCGCGTCAACTGTGAAGCGGGCCTTGACTCCCTGGCAAGAACCAACTGAGAACGAAGGGGTGGCCCTC GACGATTCATACAAAGCATTCCGAACGAATCTGGTGTTGCTATGGACATTCAGTAATGGTCTTCTGGCGCTGTGT ATTAACAACCTCAGCATCGACAGGCTTTGTCTAACGTCGACGTCTACAACTCGCACGGCATGGTATTTCAAGATT ATTCTGTTGGCCACTTCTGGTCTCTCAATCTTCCGATTCTTCGGGGCACTGTACTTCCTAGTGAAGACCGGAGTC TTGTGCTGCATTTCCAGGCACTGA |
| Gene | >Pro_DTO377G3_2|g4435.t1 ATGGAATCACTCGACCTTCCTGATCAGATCAGATTACACAACCTTTCTCACCAGGGGTCCGCTGTGTCCTCTTCC AAGGAGTCGGGACGACACAAGGGAAGTAGCATCCGTCGATATCCAACACGGCGGATCAAGTTGACACAAGGCTCG GTCTTGAGTATCAACTATCCGGTACCGAGTCCTATACGCAATGCTATCCAGCCAGAGTATCGAGATGCGGAGGGG GAACTTTCTGAAGAATTCACACAAATGAGATGTGAGTATTCCCACCAATGTTCCAGTTGACTCGAACATATCATG ATAAGCTGACTTATTTTATTTTCTTTAGACACTGCCGCGACGTGTGATCCTGATGAATTTACGCTACGCAATGGT TACAATCTCCGCCCTTCGATGTATAATCGGCACACTGAACTTCTCATTGCCGTCACATACTACAACGAAGATAAA GTCCTGACCGCCCGAACCCTGCATGGGGTAATGCAAAATGTCCGAGACATCGTGAAATTGAAAAAGACAGAATTT TGGGATCGGGGTGGTCCCGCATGGCAGAAGATTGTCGTCTGTCTTGTCTTCGATGGCATGGATCCCTGCGATAAA AACACACTTGACGTCCTGGCGACTATTGGCGTTTTTCAAGATGGCGTGATGAAGCAAGATGTGGACGGAAGAGAA ACGATCGCTCATGTTGTTTGTTTCCCCGCCTTCCAACCCTTGTGGATTTCAGTAAGGGAAATGTTTAGATGCTAA TGGTTCTTAGTTTGAATATACCACACAGTTGTCGGTTACGCCGAAGCAAGAGCTTGTGCGTCCATACAAAGACGA CCCTATGAATCTTCCCCCGGTACAAATGATGTTTTGCCTTAAGAAAAAGAATGCGAAGAAGATCAACTCACATCG GTGGCTATTCAACGCATTTGGGCGCATTTTGAATCCGGAGATATGCATCTTGATTGACGCGGGCACAAAACCCGG GCCTAAGTCTTTGCTAGCCCTATGGCAGGCTTTCTACAACGATAAAAATATTGGTGGGGCCTGCGGTGAAATTCA CGCGCTTCTTGGCCACCGATGGAAGAAGCTCCTCAATCCCTTGGTTGCAGCTCAAAATTTTGAATACAAAATCTC CAATATCCTGGACAAGCCCTTAGAGAGCAGTTTTGGCTACGTCAGCGTACTTCCGGGGGCTTTCTCTGCCTATCG GTATCGCGCTATTATGGGCAGGCCTCTTGAGCAGTATTTTCATGGGGATCACACACTAGCTCAGAAGCTCGGTAA GAAAGGGATCGACGGAATGAATATCTTTAAGAAGAATATGTTTCTTGCAGAGGATCGTATCCTTTGCTTCGAATT AGTTGCTAAGGCTGGCAACCAGTGGCTACTTACATACGTGAAAGCATCGAAAGGGGAAACAGACGTCCCAGAACG ACCAGCAGAGTTCCTAAGTCAACGGCGACGATGGCTGAATGGCTCTTTTGCAGCATCGTTATATTCAGTCATGCA TTTCAATCGGATATATAAGAGTGGGCATGGTATCATTCGGTTGCTACTGCTTCATATCCAATTGATTTACAATAT CTGCCAGTTAGTCATGACATGGCTTTCACTCGGTAAGTTGACGGTACTCTTTGGGGTTCAAATCAATCCTACACC AGATCACTAACATAGTATAGCATCCTACTGGCTCACTAGTTCCGTCATTTTGGATATTGTGGGGACACCAAGTGC GACCAACAAATTCAAAGGGTGGCCTTTTGGGAATGATGCTACCCCGATTGTCAATAATCTGTTGAAGATCGGTTA TCTGACATTTCTTATGCTTCAATTCATTCTAGCTCTCGGAAATCGACCAAAGGGGTAAGTATTAGGGCCTGGGGA TAGGGTACTATCTTTCGCTCCGCTAATATCCAATCACAGATCAAAGTTTCTGTACACGCTCTCCTTTGTCTACTT CTCTGTGGTCCAGCTCTATCTCCTCATTTTGTCGTTCTATCTCGTTGCGCAGGCAATGACTCCCGAGAATCTCAA TTTTGATTTCAGCCATGGGTTTTCGGCACTCATATCGGGCTTTTTCAACTCAACGGGTGGGCTTGTTTTGATTGC CTTGGTATCAACATACGGGATTTACTTCATTGCAAGTATACTCTACGCCGACCCCTGGCATATGCTCACTTCCTC CTGGGCATATTTCCTTGGAATGCCTTCTTCGATCAATGTTCTGATGGTCTATGCATTTTGCAATTGGCATGATGT TTCATGGGGGACAAAGGGATCAGATGCACCCGAAAAACTGCCCTCAGCGCAAACCAAAAAGGATGATGAAACGCC TTTTGTCGAGGAACTTGACAAGCCTCAAGTCGACATTGATGAACAATTCGCGTCAACTGTGAAGCGGGCCTTGAC TCCCTGGCAAGAACCAACTGAGAACGAAGGGGTGGCCCTCGACGATTCATACAAAGCATTCCGAACGAATCTGGT GTTGCTATGGACATTCAGTAATGGTCTTCTGGCGCTGTGTATTAACAACCTCAGCATCGACAGGCTTTGTCTAAC GGTAAGTGAAGCTCGAGTTCCTTCGTCTGCTGTTTACACCCGCTAACTGACATAGTCGACGTCTACAACTCGCAC GGCATGGTATTTCAAGATTATTCTGTTGGCCACTTCTGGTCTCTCAATCTTCCGATTCTTCGGGGCACTGTACTT CCTAGTGAAGACCGGAGTCTTGTGCTGCATTTCCAGGCACTGA |