© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4431.t1 |
| Gene name | |
| Location | scaffold_09:235743..236332 |
| Strand | + |
| Gene length (bp) | 589 |
| Transcript length (bp) | 360 |
| Coding sequence length (bp) | 360 |
| Protein length (aa) | 120 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00957 | Synaptobrevin | Synaptobrevin | 1.1E-32 | 28 | 114 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 94 | 116 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 338.06 | 197.18 | 478.95 |
| 5d_25C | Five days - 25 degrees Celsius | 412.22 | 245.72 | 578.72 |
| 7d_25C | Seven days - 25 degrees Celsius | 497.00 | 300.01 | 693.99 |
| 10d_25C | Ten days - 25 degrees Celsius | 742.73 | 453.91 | 1031.55 |
| 7d_15C | Seven days - 15 degrees Celsius | 333.35 | 189.80 | 476.89 |
| 7d_30C | Seven days - 30 degrees Celsius | 435.65 | 260.17 | 611.12 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.448919 | no |
| 3d_25C | 7d_25C | 0.081239 | no |
| 3d_25C | 7d_15C | 0.970334 | no |
| 3d_25C | 7d_30C | 0.300393 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.457726 | no |
| 5d_25C | 7d_15C | 0.415254 | no |
| 5d_25C | 7d_30C | 0.865529 | no |
| 5d_25C | 10d_25C | 0.004450 | yes |
| 7d_25C | 7d_15C | 0.075931 | no |
| 7d_25C | 7d_30C | 0.634774 | no |
| 7d_25C | 10d_25C | 0.056706 | no |
| 7d_15C | 7d_30C | 0.272724 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.009770 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4431.t1 MAASEQPYDPYIPSGSAGAPAATGQNGNQRTAALQAQIDDTVGVMRENINKVSQRGENLDSLQDKTDNLAVSAQG FRRGANRVRKDMWWKDMKMRVCLVICVIVLLIVIIVPSVVATKH* |
| Coding | >Pro_DTO377G3_2|g4431.t1 ATGGCTGCCTCCGAACAACCTTACGACCCCTATATCCCATCTGGCTCCGCTGGAGCCCCCGCTGCCACCGGGCAG AATGGCAACCAGCGAACCGCCGCTTTGCAAGCACAAATCGATGATACTGTTGGTGTGATGCGCGAAAACATCAAC AAGGTTTCCCAACGTGGTGAGAACTTGGATTCTCTCCAGGACAAGACCGACAACCTCGCCGTCTCGGCCCAGGGC TTCCGCCGAGGTGCCAATCGCGTTCGCAAAGACATGTGGTGGAAGGACATGAAGATGCGCGTGTGTCTAGTCATC TGTGTGATCGTTCTCCTGATTGTCATTATTGTGCCGTCCGTGGTTGCCACTAAGCACTAA |
| Transcript | >Pro_DTO377G3_2|g4431.t1 ATGGCTGCCTCCGAACAACCTTACGACCCCTATATCCCATCTGGCTCCGCTGGAGCCCCCGCTGCCACCGGGCAG AATGGCAACCAGCGAACCGCCGCTTTGCAAGCACAAATCGATGATACTGTTGGTGTGATGCGCGAAAACATCAAC AAGGTTTCCCAACGTGGTGAGAACTTGGATTCTCTCCAGGACAAGACCGACAACCTCGCCGTCTCGGCCCAGGGC TTCCGCCGAGGTGCCAATCGCGTTCGCAAAGACATGTGGTGGAAGGACATGAAGATGCGCGTGTGTCTAGTCATC TGTGTGATCGTTCTCCTGATTGTCATTATTGTGCCGTCCGTGGTTGCCACTAAGCACTAA |
| Gene | >Pro_DTO377G3_2|g4431.t1 ATGGCTGCCTCCGAACAACCTTACGACCCCTATATCCCATCTGGCTCCGCTGGAGCCCCCGCTGCCACCGGGCAG AATGGCAACCAGCGAACCGCCGCTTTGCAAGCAGTAAGTCAATCCTCGACAATCTCTTGACTCCTAGCGACCTCA GCCAGTGAGCAAACAGACAAATATGGTCTGGTGGATAGCGAATGCTTGCTTTCTTGTTGAGCTATCAAAATGCGA AGGCTGGGGCGGTTGATTTTCGCAATGGGGCTGACATGGTATCATCTATAGCAAATCGATGATACTGTTGGTGTG ATGCGCGAAAACATCAACAAGGTTTCCCAACGTGGTGAGAACTTGGATTCTCTCCAGGACAAGACCGACAACCTC GCCGTCTCGGCCCAGGGCTTCCGCCGAGGTGCCAATCGCGTTCGCAAAGACATGTGGTGGAAGGACATGAAGATG CGCGTGTGTCTAGTCATCTGTGTGATCGTTCTCCTGATTGTCATTATTGTGCCGTCCGGTAAGCGCTCCTTGGCA TTCCCCTACCTGACTCTCCAGCGCGACACTAACACCGTCCACAGTGGTTGCCACTAAGCACTAA |