© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4411.t1 |
| Gene name | |
| Location | scaffold_09:192256..193939 |
| Strand | - |
| Gene length (bp) | 1683 |
| Transcript length (bp) | 1578 |
| Coding sequence length (bp) | 1578 |
| Protein length (aa) | 526 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00067 | p450 | Cytochrome P450 | 6.1E-66 | 55 | 496 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Yes |
| GO:0004497 | monooxygenase activity | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 75.09 | 45.79 | 104.39 |
| 5d_25C | Five days - 25 degrees Celsius | 59.45 | 36.09 | 82.82 |
| 7d_25C | Seven days - 25 degrees Celsius | 44.47 | 26.26 | 62.69 |
| 10d_25C | Ten days - 25 degrees Celsius | 53.01 | 31.77 | 74.24 |
| 7d_15C | Seven days - 15 degrees Celsius | 52.35 | 31.35 | 73.34 |
| 7d_30C | Seven days - 30 degrees Celsius | 87.54 | 53.60 | 121.48 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.333742 | no |
| 3d_25C | 7d_25C | 0.010411 | yes |
| 3d_25C | 7d_15C | 0.105926 | no |
| 3d_25C | 7d_30C | 0.559331 | no |
| 3d_25C | 10d_25C | 0.115258 | no |
| 5d_25C | 7d_25C | 0.227800 | no |
| 5d_25C | 7d_15C | 0.651596 | no |
| 5d_25C | 7d_30C | 0.074414 | no |
| 5d_25C | 10d_25C | 0.693749 | no |
| 7d_25C | 7d_15C | 0.548542 | no |
| 7d_25C | 7d_30C | 0.001278 | yes |
| 7d_25C | 10d_25C | 0.510355 | no |
| 7d_15C | 7d_30C | 0.012904 | yes |
| 7d_15C | 10d_25C | 0.971799 | no |
| 7d_30C | 10d_25C | 0.012609 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4411.t1 MFVESVLGCFSLQRVLGGLVGLLAVATIAYTLYNRFIHPLRRINGPFLASITPWVQLYHGLKGDRHLWLHRLHSQ YGTHVRVAPNFISVNSDRGLHDIYGHGKRLQKANFYNAFPAIKGVYNTHNAIDKTMHGRKRRVLSQAFSDNALKG MEDVMLLHVRQLCAVLAGYDGDFESHDQKGNVKNMGDWFSYLSYDVMGELCFGKSFDMLISETRRYKVGLVDRAA NRHYVCGLWMPLDTWGLDQIFIRKLTRDRWNFIMNSRVEANERAKERTQIGRDAKKDFFYYLLNAKDPETGNGLS TPELWGESNVLMIAGSDTTSTTLAATLFYLVRRPDALAKLCAEVRGAFNEVEEIITSSQLGELVYLKACIDEALR LAPAVPGAIPREVMQGGAVVDGVFLPAGTDCGTPTYSIHRQERYYREPGTFMPERWIENATCMGSGLSWQTTKES IETARHAFCPFSIGPRGCIGKSMAFMEMRLTLARLVFLFDMSLADRQGEDAGGHLALTDHFTSAKNGPNVVFRRR * |
| Coding | >Pro_DTO377G3_2|g4411.t1 ATGTTTGTTGAATCGGTCTTGGGGTGCTTTTCTCTACAAAGAGTCCTAGGAGGCTTGGTAGGGCTATTAGCAGTA GCGACCATCGCCTACACCCTCTACAATCGCTTCATCCACCCACTTCGCCGTATCAACGGCCCCTTCCTCGCATCT ATCACACCCTGGGTCCAGCTCTACCATGGCCTGAAGGGCGACCGCCACCTCTGGCTGCACAGGCTGCACAGTCAG TACGGGACACACGTACGAGTTGCGCCTAATTTCATCTCTGTCAACTCTGACCGTGGATTACACGATATCTATGGG CACGGGAAACGCCTTCAGAAGGCCAATTTTTACAATGCTTTCCCTGCTATCAAGGGCGTGTATAACACGCACAAC GCTATTGATAAAACCATGCACGGTCGCAAAAGGAGAGTTCTTAGCCAGGCCTTTTCTGATAATGCTCTGAAGGGG ATGGAGGATGTGATGCTCCTCCATGTGCGTCAGCTGTGTGCTGTGCTTGCTGGGTATGACGGGGATTTCGAATCG CATGATCAGAAGGGCAATGTCAAGAACATGGGTGATTGGTTTAGCTATCTCTCGTACGATGTCATGGGCGAGCTC TGCTTTGGGAAGAGCTTTGACATGCTTATTTCTGAGACGAGGAGATATAAAGTTGGGTTGGTGGATCGTGCTGCG AACAGGCATTATGTGTGTGGCCTTTGGATGCCCCTGGACACATGGGGTCTGGACCAGATATTCATCCGCAAGCTG ACGCGCGATCGATGGAACTTCATTATGAATTCGCGTGTTGAAGCCAACGAGCGCGCTAAGGAGCGTACCCAGATT GGTCGGGACGCCAAGAAGGATTTCTTTTATTACCTGTTGAACGCGAAGGACCCTGAGACCGGCAATGGACTTAGC ACGCCCGAGCTTTGGGGCGAGTCCAACGTCCTCATGATTGCGGGCAGCGATACAACCTCGACTACACTGGCAGCC ACACTCTTCTACTTAGTTCGTAGACCAGATGCATTGGCCAAGCTGTGTGCCGAGGTACGCGGCGCCTTTAACGAA GTCGAAGAGATCATAACCAGCAGTCAGCTCGGCGAACTGGTGTATCTCAAAGCATGCATCGACGAGGCGTTGCGT CTGGCCCCAGCGGTGCCCGGTGCGATTCCCCGCGAAGTGATGCAAGGTGGCGCCGTGGTCGACGGCGTGTTCTTA CCCGCCGGTACGGACTGCGGCACACCAACATACTCCATCCACCGCCAAGAGCGATACTACCGGGAACCAGGGACC TTCATGCCGGAGCGCTGGATTGAGAACGCCACCTGCATGGGCTCTGGATTGTCCTGGCAGACGACCAAGGAGAGC ATTGAGACTGCGCGACACGCATTTTGTCCGTTTAGTATTGGGCCCCGTGGATGCATTGGCAAGAGCATGGCTTTT ATGGAGATGCGGCTGACATTGGCGCGGCTGGTGTTCCTCTTTGACATGTCATTGGCCGATCGTCAGGGCGAAGAC GCGGGGGGGCACCTGGCGCTGACCGATCATTTTACCTCGGCGAAGAATGGACCGAATGTTGTATTTCGACGGAGA TAA |
| Transcript | >Pro_DTO377G3_2|g4411.t1 ATGTTTGTTGAATCGGTCTTGGGGTGCTTTTCTCTACAAAGAGTCCTAGGAGGCTTGGTAGGGCTATTAGCAGTA GCGACCATCGCCTACACCCTCTACAATCGCTTCATCCACCCACTTCGCCGTATCAACGGCCCCTTCCTCGCATCT ATCACACCCTGGGTCCAGCTCTACCATGGCCTGAAGGGCGACCGCCACCTCTGGCTGCACAGGCTGCACAGTCAG TACGGGACACACGTACGAGTTGCGCCTAATTTCATCTCTGTCAACTCTGACCGTGGATTACACGATATCTATGGG CACGGGAAACGCCTTCAGAAGGCCAATTTTTACAATGCTTTCCCTGCTATCAAGGGCGTGTATAACACGCACAAC GCTATTGATAAAACCATGCACGGTCGCAAAAGGAGAGTTCTTAGCCAGGCCTTTTCTGATAATGCTCTGAAGGGG ATGGAGGATGTGATGCTCCTCCATGTGCGTCAGCTGTGTGCTGTGCTTGCTGGGTATGACGGGGATTTCGAATCG CATGATCAGAAGGGCAATGTCAAGAACATGGGTGATTGGTTTAGCTATCTCTCGTACGATGTCATGGGCGAGCTC TGCTTTGGGAAGAGCTTTGACATGCTTATTTCTGAGACGAGGAGATATAAAGTTGGGTTGGTGGATCGTGCTGCG AACAGGCATTATGTGTGTGGCCTTTGGATGCCCCTGGACACATGGGGTCTGGACCAGATATTCATCCGCAAGCTG ACGCGCGATCGATGGAACTTCATTATGAATTCGCGTGTTGAAGCCAACGAGCGCGCTAAGGAGCGTACCCAGATT GGTCGGGACGCCAAGAAGGATTTCTTTTATTACCTGTTGAACGCGAAGGACCCTGAGACCGGCAATGGACTTAGC ACGCCCGAGCTTTGGGGCGAGTCCAACGTCCTCATGATTGCGGGCAGCGATACAACCTCGACTACACTGGCAGCC ACACTCTTCTACTTAGTTCGTAGACCAGATGCATTGGCCAAGCTGTGTGCCGAGGTACGCGGCGCCTTTAACGAA GTCGAAGAGATCATAACCAGCAGTCAGCTCGGCGAACTGGTGTATCTCAAAGCATGCATCGACGAGGCGTTGCGT CTGGCCCCAGCGGTGCCCGGTGCGATTCCCCGCGAAGTGATGCAAGGTGGCGCCGTGGTCGACGGCGTGTTCTTA CCCGCCGGTACGGACTGCGGCACACCAACATACTCCATCCACCGCCAAGAGCGATACTACCGGGAACCAGGGACC TTCATGCCGGAGCGCTGGATTGAGAACGCCACCTGCATGGGCTCTGGATTGTCCTGGCAGACGACCAAGGAGAGC ATTGAGACTGCGCGACACGCATTTTGTCCGTTTAGTATTGGGCCCCGTGGATGCATTGGCAAGAGCATGGCTTTT ATGGAGATGCGGCTGACATTGGCGCGGCTGGTGTTCCTCTTTGACATGTCATTGGCCGATCGTCAGGGCGAAGAC GCGGGGGGGCACCTGGCGCTGACCGATCATTTTACCTCGGCGAAGAATGGACCGAATGTTGTATTTCGACGGAGA TAA |
| Gene | >Pro_DTO377G3_2|g4411.t1 ATGTTTGTTGAATCGGTCTTGGGGTGCTTTTCTCTACAAAGAGTCCTAGGAGGCTTGGTAGGGCTATTAGCAGTA GCGGTACGTCCTATTCTTTTGATACCCCCAATCAACTTCTAATTGACTACAGACCATCGCCTACACCCTCTACAA TCGCTTCATCCACCCACTTCGCCGTATCAACGGCCCCTTCCTCGCATCTATCACACCCTGGGTCCAGCTCTACCA TGGCCTGAAGGGCGACCGCCACCTCTGGCTGCACAGGCTGCACAGTCAGTACGGGACACACGTACGAGTTGCGCC TAATTTCATCTCTGTCAACTCTGACCGTGGATTACACGATATCTATGGGCACGGGAAACGCCTTCAGAAGGCCAA TTTTTACAATGCTTTCCCTGCTATCAAGGGCGTGTATAACACGCACAACGCTATTGATAAAACCATGCACGGTCG CAAAAGGAGAGTTCTTAGCCAGGCCTTTTCTGATAATGCTCTGAAGGGGATGGAGGATGTGATGCTCCTCCATGT GCGTCAGCTGTGTGCTGTGCTTGCTGGGTATGACGGGGATTTCGAATCGCATGATCAGAAGGGCAATGTCAAGAA CATGGGTGATTGGTTTAGCTATCTCTCGTACGATGTCATGGGCGAGCTCTGCTTTGGGAAGAGCTTTGACATGCT TATTTCTGAGACGAGGAGATATAAAGTTGGGTTGGTGGATCGTGCTGCGAACAGGCATTATGTGGTAAGCATTTC TTTTTTATCCATCGTCAAGGAACAATTCATCTGATTCTCTCATAGTGTGGCCTTTGGATGCCCCTGGACACATGG GGTCTGGACCAGATATTCATCCGCAAGCTGACGCGCGATCGATGGAACTTCATTATGAATTCGCGTGTTGAAGCC AACGAGCGCGCTAAGGAGCGTACCCAGATTGGTCGGGACGCCAAGAAGGATTTCTTTTATTACCTGTTGAACGCG AAGGACCCTGAGACCGGCAATGGACTTAGCACGCCCGAGCTTTGGGGCGAGTCCAACGTCCTCATGATTGCGGGC AGCGATACAACCTCGACTACACTGGCAGCCACACTCTTCTACTTAGTTCGTAGACCAGATGCATTGGCCAAGCTG TGTGCCGAGGTACGCGGCGCCTTTAACGAAGTCGAAGAGATCATAACCAGCAGTCAGCTCGGCGAACTGGTGTAT CTCAAAGCATGCATCGACGAGGCGTTGCGTCTGGCCCCAGCGGTGCCCGGTGCGATTCCCCGCGAAGTGATGCAA GGTGGCGCCGTGGTCGACGGCGTGTTCTTACCCGCCGGTACGGACTGCGGCACACCAACATACTCCATCCACCGC CAAGAGCGATACTACCGGGAACCAGGGACCTTCATGCCGGAGCGCTGGATTGAGAACGCCACCTGCATGGGCTCT GGATTGTCCTGGCAGACGACCAAGGAGAGCATTGAGACTGCGCGACACGCATTTTGTCCGTTTAGTATTGGGCCC CGTGGATGCATTGGCAAGAGCATGGCTTTTATGGAGATGCGGCTGACATTGGCGCGGCTGGTGTTCCTCTTTGAC ATGTCATTGGCCGATCGTCAGGGCGAAGACGCGGGGGGGCACCTGGCGCTGACCGATCATTTTACCTCGGCGAAG AATGGACCGAATGTTGTATTTCGACGGAGATAA |