© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4387.t1 |
| Gene name | |
| Location | scaffold_09:127883..128735 |
| Strand | - |
| Gene length (bp) | 852 |
| Transcript length (bp) | 477 |
| Coding sequence length (bp) | 477 |
| Protein length (aa) | 159 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01246 | Ribosomal_L24e | Ribosomal protein L24e | 1.3E-27 | 1 | 66 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 58 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1293.79 | 772.29 | 1815.30 |
| 5d_25C | Five days - 25 degrees Celsius | 1133.83 | 677.10 | 1590.57 |
| 7d_25C | Seven days - 25 degrees Celsius | 1132.36 | 675.08 | 1589.63 |
| 10d_25C | Ten days - 25 degrees Celsius | 1317.24 | 784.43 | 1850.05 |
| 7d_15C | Seven days - 15 degrees Celsius | 1599.01 | 940.36 | 2257.67 |
| 7d_30C | Seven days - 30 degrees Celsius | 1132.71 | 680.90 | 1584.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.647867 | no |
| 3d_25C | 7d_25C | 0.638983 | no |
| 3d_25C | 7d_15C | 0.408826 | no |
| 3d_25C | 7d_30C | 0.631891 | no |
| 3d_25C | 10d_25C | 0.959911 | no |
| 5d_25C | 7d_25C | 0.997272 | no |
| 5d_25C | 7d_15C | 0.134928 | no |
| 5d_25C | 7d_30C | 0.997342 | no |
| 5d_25C | 10d_25C | 0.586445 | no |
| 7d_25C | 7d_15C | 0.135802 | no |
| 7d_25C | 7d_30C | 0.998976 | no |
| 7d_25C | 10d_25C | 0.583725 | no |
| 7d_15C | 7d_30C | 0.122548 | no |
| 7d_15C | 10d_25C | 0.453635 | no |
| 7d_30C | 10d_25C | 0.574467 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4387.t1 MRTYDDAFSGQKIYPGKGKLFVRGDSKIFRFQRGKSESLFLQRKNPRRIAWTVLFRRQHRKGISEEVAKKRTRRV VKNQRGIVGASLDVIKERRSQRPEAREAARKQAIKDAKEKKAASASAKKAEKAKIAASKGGAQRIQSKQGAKGSA PKVAAKSR* |
| Coding | >Pro_DTO377G3_2|g4387.t1 ATGCGTACTTACGACGACGCCTTCAGCGGCCAGAAGATCTACCCTGGCAAGGGCAAGCTATTCGTCCGTGGCGAC AGCAAGATCTTCCGCTTCCAGCGTGGAAAGTCCGAGTCCCTTTTCCTTCAGCGCAAGAACCCCCGCCGCATCGCA TGGACTGTTCTCTTCCGTCGCCAGCACCGCAAGGGTATCTCTGAGGAGGTCGCCAAGAAGCGCACCCGCCGTGTT GTCAAGAACCAGCGTGGCATCGTCGGTGCTTCCCTCGATGTGATTAAGGAGCGCCGCTCCCAACGCCCCGAGGCT CGTGAGGCTGCTCGCAAGCAGGCCATCAAGGACGCCAAGGAGAAGAAGGCTGCTTCCGCCAGCGCCAAGAAGGCC GAGAAGGCTAAGATCGCCGCCTCTAAGGGCGGTGCCCAGCGCATCCAGAGCAAGCAGGGTGCTAAGGGCTCTGCT CCCAAGGTCGCCGCCAAGTCCCGCTAA |
| Transcript | >Pro_DTO377G3_2|g4387.t1 ATGCGTACTTACGACGACGCCTTCAGCGGCCAGAAGATCTACCCTGGCAAGGGCAAGCTATTCGTCCGTGGCGAC AGCAAGATCTTCCGCTTCCAGCGTGGAAAGTCCGAGTCCCTTTTCCTTCAGCGCAAGAACCCCCGCCGCATCGCA TGGACTGTTCTCTTCCGTCGCCAGCACCGCAAGGGTATCTCTGAGGAGGTCGCCAAGAAGCGCACCCGCCGTGTT GTCAAGAACCAGCGTGGCATCGTCGGTGCTTCCCTCGATGTGATTAAGGAGCGCCGCTCCCAACGCCCCGAGGCT CGTGAGGCTGCTCGCAAGCAGGCCATCAAGGACGCCAAGGAGAAGAAGGCTGCTTCCGCCAGCGCCAAGAAGGCC GAGAAGGCTAAGATCGCCGCCTCTAAGGGCGGTGCCCAGCGCATCCAGAGCAAGCAGGGTGCTAAGGGCTCTGCT CCCAAGGTCGCCGCCAAGTCCCGCTAA |
| Gene | >Pro_DTO377G3_2|g4387.t1 ATGCGTACTTACGACGACGCCTTCAGCGGCCAGAAGATCTACCCTGGCAAGGTGCGTTTGCAAATCCCGTCGTCG CTTTTGGGGGGGGGAATTCTTGTGCGAGGGAACAACGGCATCACGGATTCGACATTCACTCTTCGACGTCAAAAC TGTCGCTCTCCATCTTGCCGAACTACCGCACATGAATTTTGCCGTTTTCTTATTGCCGCTAGAAGCTAATCTTTG ATGTTCAATGTTTAGGGCAAGCTATTCGTCCGTGGCGACAGCAAGATCTTCCGCTTCCAGCGTGGAAAGTCCGAG TCCCTTTTCCTTCAGCGCAAGAACCCCCGCCGCATCGCATGGACTGTTCTCTTCCGTCGCCAGCACCGCAAGGGT ATCTCTGAGGTCGGTCGCCCCTCTCCTTGGATTATTGTTAGATTGTGTGGAGGGACAAAGGCCGAATTGAATGGT GACGCACAAACCATGAAACGGAGCAAGAGCAGGAATTATCACGTCACCACCATTATTCGGATCAAATGATGGAGA ATGCGACTGCAGATTGCTGACCGGGTTATCTTTTTGGATATATAGGAGGTCGCCAAGAAGCGCACCCGCCGTGTT GTCAAGAACCAGCGTGGCATCGTCGGTGCTTCCCTCGATGTGATTAAGGAGCGCCGCTCCCAACGCCCCGAGGCT CGTGAGGCTGCTCGCAAGCAGGCCATCAAGGACGCCAAGGAGAAGAAGGCTGCTTCCGCCAGCGCCAAGAAGGCC GAGAAGGCTAAGATCGCCGCCTCTAAGGGCGGTGCCCAGCGCATCCAGAGCAAGCAGGGTGCTAAGGGCTCTGCT CCCAAGGTCGCCGCCAAGTCCCGCTAA |