Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4354.t1
Gene name
Locationscaffold_09:36222..37146
Strand+
Gene length (bp)924
Transcript length (bp)924
Coding sequence length (bp)924
Protein length (aa) 308

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00400 WD40 WD domain, G-beta repeat 1.4E-04 16 50
PF00400 WD40 WD domain, G-beta repeat 1.3E-05 64 92
PF00400 WD40 WD domain, G-beta repeat 1.4E-08 102 136
PF00400 WD40 WD domain, G-beta repeat 9.0E-11 140 178
PF00400 WD40 WD domain, G-beta repeat 2.3E-09 182 220
PF00400 WD40 WD domain, G-beta repeat 2.1E-05 227 261
PF00400 WD40 WD domain, G-beta repeat 2.8E-03 268 304
PF12894 ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 1.2E-04 150 193

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4354.t1
MADLVIPSFGRLVASKTLDGHTGFVWDVALSGNGQILASISNDMMIRLWNANTGLQRGAARNNGHSTWVRSVRFS
PAGRFLATASDDMTIRISDVNTGFTYRMLQGHTGKVRAVEFSPDGKTLASASDDFTVRLWNAGLGSLVKTLNGHS
GWVRAVAFSPDGKTVASTSDDNTIRLWDTTTGKEIHRLNGHESSTRAVCFSPDGKLLASGSQDKDLRIWDTNSGA
MLNVLRGHSGPLRVIAFSSDGNLVASAADDLTIRVWAVPLGFTCVRILTGYSGWVRAITLSRDENVVAYTSDDMT
IKIWISA*
Coding >Pro_DTO377G3_2|g4354.t1
ATGGCGGACTTAGTCATTCCTTCCTTTGGGAGGCTAGTTGCATCCAAAACTCTTGATGGCCATACTGGCTTCGTT
TGGGATGTGGCTCTTTCCGGCAATGGTCAAATCCTCGCCTCAATTTCCAATGACATGATGATCCGTCTATGGAAC
GCCAACACCGGTCTCCAGCGCGGCGCCGCAAGAAACAACGGCCATTCCACGTGGGTGCGCTCTGTGAGGTTTTCC
CCCGCAGGTCGATTCTTAGCCACTGCTTCCGATGATATGACCATTCGTATCAGCGACGTGAACACCGGGTTTACC
TACCGCATGCTGCAGGGTCACACTGGCAAAGTTCGAGCGGTGGAATTTTCCCCCGACGGCAAAACTCTCGCTTCA
GCCTCAGATGATTTCACTGTGCGACTGTGGAATGCAGGCTTAGGTTCGCTGGTCAAAACCCTCAATGGGCACTCG
GGCTGGGTGCGCGCTGTGGCCTTTTCGCCTGACGGCAAGACTGTCGCTTCAACCTCGGACGATAATACAATTCGT
CTCTGGGACACAACCACCGGCAAAGAAATCCATCGATTAAATGGCCATGAATCCTCAACCAGGGCCGTCTGCTTC
TCTCCTGATGGGAAGCTGCTAGCGTCGGGTTCGCAGGACAAGGACCTGCGCATCTGGGATACGAATTCTGGCGCC
ATGCTCAACGTCCTCCGGGGACACTCTGGACCTCTGCGCGTGATCGCATTTTCTAGCGATGGGAACCTGGTGGCA
TCAGCGGCCGATGACCTGACAATCCGCGTATGGGCTGTGCCATTAGGGTTTACCTGCGTCCGAATATTAACGGGC
TACTCCGGATGGGTTCGAGCTATTACTTTGTCGCGCGATGAAAACGTAGTAGCTTACACGTCTGATGACATGACT
ATCAAGATTTGGATTTCGGCGTGA
Transcript >Pro_DTO377G3_2|g4354.t1
ATGGCGGACTTAGTCATTCCTTCCTTTGGGAGGCTAGTTGCATCCAAAACTCTTGATGGCCATACTGGCTTCGTT
TGGGATGTGGCTCTTTCCGGCAATGGTCAAATCCTCGCCTCAATTTCCAATGACATGATGATCCGTCTATGGAAC
GCCAACACCGGTCTCCAGCGCGGCGCCGCAAGAAACAACGGCCATTCCACGTGGGTGCGCTCTGTGAGGTTTTCC
CCCGCAGGTCGATTCTTAGCCACTGCTTCCGATGATATGACCATTCGTATCAGCGACGTGAACACCGGGTTTACC
TACCGCATGCTGCAGGGTCACACTGGCAAAGTTCGAGCGGTGGAATTTTCCCCCGACGGCAAAACTCTCGCTTCA
GCCTCAGATGATTTCACTGTGCGACTGTGGAATGCAGGCTTAGGTTCGCTGGTCAAAACCCTCAATGGGCACTCG
GGCTGGGTGCGCGCTGTGGCCTTTTCGCCTGACGGCAAGACTGTCGCTTCAACCTCGGACGATAATACAATTCGT
CTCTGGGACACAACCACCGGCAAAGAAATCCATCGATTAAATGGCCATGAATCCTCAACCAGGGCCGTCTGCTTC
TCTCCTGATGGGAAGCTGCTAGCGTCGGGTTCGCAGGACAAGGACCTGCGCATCTGGGATACGAATTCTGGCGCC
ATGCTCAACGTCCTCCGGGGACACTCTGGACCTCTGCGCGTGATCGCATTTTCTAGCGATGGGAACCTGGTGGCA
TCAGCGGCCGATGACCTGACAATCCGCGTATGGGCTGTGCCATTAGGGTTTACCTGCGTCCGAATATTAACGGGC
TACTCCGGATGGGTTCGAGCTATTACTTTGTCGCGCGATGAAAACGTAGTAGCTTACACGTCTGATGACATGACT
ATCAAGATTTGGATTTCGGCGTGA
Gene >Pro_DTO377G3_2|g4354.t1
ATGGCGGACTTAGTCATTCCTTCCTTTGGGAGGCTAGTTGCATCCAAAACTCTTGATGGCCATACTGGCTTCGTT
TGGGATGTGGCTCTTTCCGGCAATGGTCAAATCCTCGCCTCAATTTCCAATGACATGATGATCCGTCTATGGAAC
GCCAACACCGGTCTCCAGCGCGGCGCCGCAAGAAACAACGGCCATTCCACGTGGGTGCGCTCTGTGAGGTTTTCC
CCCGCAGGTCGATTCTTAGCCACTGCTTCCGATGATATGACCATTCGTATCAGCGACGTGAACACCGGGTTTACC
TACCGCATGCTGCAGGGTCACACTGGCAAAGTTCGAGCGGTGGAATTTTCCCCCGACGGCAAAACTCTCGCTTCA
GCCTCAGATGATTTCACTGTGCGACTGTGGAATGCAGGCTTAGGTTCGCTGGTCAAAACCCTCAATGGGCACTCG
GGCTGGGTGCGCGCTGTGGCCTTTTCGCCTGACGGCAAGACTGTCGCTTCAACCTCGGACGATAATACAATTCGT
CTCTGGGACACAACCACCGGCAAAGAAATCCATCGATTAAATGGCCATGAATCCTCAACCAGGGCCGTCTGCTTC
TCTCCTGATGGGAAGCTGCTAGCGTCGGGTTCGCAGGACAAGGACCTGCGCATCTGGGATACGAATTCTGGCGCC
ATGCTCAACGTCCTCCGGGGACACTCTGGACCTCTGCGCGTGATCGCATTTTCTAGCGATGGGAACCTGGTGGCA
TCAGCGGCCGATGACCTGACAATCCGCGTATGGGCTGTGCCATTAGGGTTTACCTGCGTCCGAATATTAACGGGC
TACTCCGGATGGGTTCGAGCTATTACTTTGTCGCGCGATGAAAACGTAGTAGCTTACACGTCTGATGACATGACT
ATCAAGATTTGGATTTCGGCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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