© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4352.t1 |
| Gene name | |
| Location | scaffold_09:32513..34113 |
| Strand | - |
| Gene length (bp) | 1600 |
| Transcript length (bp) | 1452 |
| Coding sequence length (bp) | 1452 |
| Protein length (aa) | 484 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.1E-33 | 42 | 409 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 33 | 50 | 17 |
| 2 | 104 | 121 | 17 |
| 3 | 131 | 153 | 22 |
| 4 | 165 | 187 | 22 |
| 5 | 197 | 219 | 22 |
| 6 | 267 | 288 | 21 |
| 7 | 303 | 325 | 22 |
| 8 | 332 | 351 | 19 |
| 9 | 356 | 378 | 22 |
| 10 | 391 | 413 | 22 |
| 11 | 423 | 445 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 20.44 | 10.34 | 30.54 |
| 5d_25C | Five days - 25 degrees Celsius | 11.24 | 4.84 | 17.65 |
| 7d_25C | Seven days - 25 degrees Celsius | 11.51 | 4.92 | 18.11 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.93 | 2.00 | 9.87 |
| 7d_15C | Seven days - 15 degrees Celsius | 10.97 | 4.38 | 17.56 |
| 7d_30C | Seven days - 30 degrees Celsius | 12.95 | 5.50 | 20.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.040199 | yes |
| 3d_25C | 7d_25C | 0.049197 | yes |
| 3d_25C | 7d_15C | 0.036724 | yes |
| 3d_25C | 7d_30C | 0.115777 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.964034 | no |
| 5d_25C | 7d_15C | 0.963414 | no |
| 5d_25C | 7d_30C | 0.740158 | no |
| 5d_25C | 10d_25C | 0.064808 | no |
| 7d_25C | 7d_15C | 0.923881 | no |
| 7d_25C | 7d_30C | 0.792977 | no |
| 7d_25C | 10d_25C | 0.052372 | no |
| 7d_15C | 7d_30C | 0.692477 | no |
| 7d_15C | 10d_25C | 0.079264 | no |
| 7d_30C | 10d_25C | 0.022681 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4352.t1 MGHAEPDLGPADEISLGPTLDEEQIEKTLIRKIDLHILPIVVLLYLFSFLDRVNIGNARLYGLEEDLGLVGNQYQ VSVSILFVTYCFFEVPSNLVLKKLRPSRYIATISILWGIIATLTGITRDYGDLVACRILLGVVEAGLFPGFITYL TLFYSKREIALRTSYLFSSAAIAGAFGGLLAYGIGFMDGICGLRGWRWIMIIEGIPTVLLGVVTWFALADDPDTA YYLNKEERALVTLRRSRYIGQTESAQKFHWADVKEGVLDWKIWAFSIGQFGIDTMLYGYSTFLPTIIKGMGNWTT AEVQALTIPCYALGAFAYLCVAWLSDRTQHRAFFICLFCAISVVGYGILISDSSSGVHYFGALMVALGLYVAVGL PLAWLPTNLPRYAKRTYATGLQLTFGNISGVMSPFLYPNSEGPRFVRGNAVTLAMVGFAGVVYGVMWVSYRVINK RRAQGLEDDKISSLSEQAIQEMGDRNPRFLYSI* |
| Coding | >Pro_DTO377G3_2|g4352.t1 ATGGGCCATGCTGAGCCTGACCTCGGCCCAGCCGATGAAATCAGCTTAGGGCCAACTCTTGATGAAGAACAGATC GAGAAAACTCTGATCAGGAAGATTGACCTGCATATCCTTCCTATCGTGGTGTTGTTGTATCTCTTCAGTTTCCTA GACCGAGTCAACATTGGAAATGCACGATTGTACGGCCTGGAAGAGGACTTGGGGCTTGTTGGCAACCAGTACCAA GTCTCGGTGTCTATCCTTTTTGTGACCTACTGTTTCTTTGAGGTCCCTTCGAATCTCGTACTCAAGAAACTACGG CCGTCTCGGTATATTGCCACGATCTCAATTTTGTGGGGTATCATTGCAACCCTCACAGGAATCACTCGGGATTAT GGTGACTTGGTTGCCTGTCGGATCCTACTCGGAGTCGTAGAAGCAGGTCTTTTCCCGGGCTTTATCACCTACCTC ACTCTCTTCTATAGCAAACGTGAGATTGCCTTGCGAACAAGCTACCTCTTTAGCAGTGCAGCTATTGCGGGAGCC TTTGGCGGGTTACTGGCTTATGGTATTGGGTTTATGGACGGCATCTGTGGACTTCGCGGCTGGCGTTGGATCATG ATCATCGAGGGGATTCCGACAGTTTTACTTGGTGTGGTGACTTGGTTCGCCTTGGCAGATGACCCGGACACAGCT TATTATCTAAACAAAGAGGAGCGAGCGCTTGTTACCCTTCGCCGGAGTCGTTATATCGGCCAAACAGAGTCTGCA CAGAAGTTTCACTGGGCGGATGTAAAAGAGGGTGTCTTAGACTGGAAGATCTGGGCGTTCTCCATTGGCCAGTTT GGTATTGATACCATGCTCTATGGATATAGTACCTTCCTTCCTACTATTATCAAAGGCATGGGAAATTGGACCACC GCCGAGGTCCAGGCATTGACAATCCCTTGCTATGCACTGGGTGCCTTTGCCTATCTGTGCGTTGCCTGGTTGAGC GATCGCACCCAACACCGTGCATTTTTCATATGTCTCTTCTGCGCTATCTCAGTCGTTGGCTATGGAATCTTGATT TCGGACTCGTCCTCGGGTGTTCATTACTTTGGTGCCTTGATGGTCGCCCTGGGACTTTACGTTGCTGTCGGCTTA CCTCTCGCCTGGTTGCCTACCAATCTGCCCCGATACGCAAAACGCACCTACGCAACTGGCTTGCAGCTTACCTTT GGCAACATCAGCGGAGTTATGTCCCCTTTCTTGTATCCTAATTCGGAAGGCCCGCGCTTCGTCCGTGGGAACGCT GTCACTCTGGCAATGGTGGGATTTGCGGGGGTTGTATATGGTGTCATGTGGGTTTCCTACCGGGTTATCAACAAA CGCAGGGCCCAGGGATTGGAGGACGACAAAATATCATCGCTCTCAGAGCAGGCTATCCAAGAAATGGGCGATCGA AACCCCAGGTTCTTGTACAGCATTTAA |
| Transcript | >Pro_DTO377G3_2|g4352.t1 ATGGGCCATGCTGAGCCTGACCTCGGCCCAGCCGATGAAATCAGCTTAGGGCCAACTCTTGATGAAGAACAGATC GAGAAAACTCTGATCAGGAAGATTGACCTGCATATCCTTCCTATCGTGGTGTTGTTGTATCTCTTCAGTTTCCTA GACCGAGTCAACATTGGAAATGCACGATTGTACGGCCTGGAAGAGGACTTGGGGCTTGTTGGCAACCAGTACCAA GTCTCGGTGTCTATCCTTTTTGTGACCTACTGTTTCTTTGAGGTCCCTTCGAATCTCGTACTCAAGAAACTACGG CCGTCTCGGTATATTGCCACGATCTCAATTTTGTGGGGTATCATTGCAACCCTCACAGGAATCACTCGGGATTAT GGTGACTTGGTTGCCTGTCGGATCCTACTCGGAGTCGTAGAAGCAGGTCTTTTCCCGGGCTTTATCACCTACCTC ACTCTCTTCTATAGCAAACGTGAGATTGCCTTGCGAACAAGCTACCTCTTTAGCAGTGCAGCTATTGCGGGAGCC TTTGGCGGGTTACTGGCTTATGGTATTGGGTTTATGGACGGCATCTGTGGACTTCGCGGCTGGCGTTGGATCATG ATCATCGAGGGGATTCCGACAGTTTTACTTGGTGTGGTGACTTGGTTCGCCTTGGCAGATGACCCGGACACAGCT TATTATCTAAACAAAGAGGAGCGAGCGCTTGTTACCCTTCGCCGGAGTCGTTATATCGGCCAAACAGAGTCTGCA CAGAAGTTTCACTGGGCGGATGTAAAAGAGGGTGTCTTAGACTGGAAGATCTGGGCGTTCTCCATTGGCCAGTTT GGTATTGATACCATGCTCTATGGATATAGTACCTTCCTTCCTACTATTATCAAAGGCATGGGAAATTGGACCACC GCCGAGGTCCAGGCATTGACAATCCCTTGCTATGCACTGGGTGCCTTTGCCTATCTGTGCGTTGCCTGGTTGAGC GATCGCACCCAACACCGTGCATTTTTCATATGTCTCTTCTGCGCTATCTCAGTCGTTGGCTATGGAATCTTGATT TCGGACTCGTCCTCGGGTGTTCATTACTTTGGTGCCTTGATGGTCGCCCTGGGACTTTACGTTGCTGTCGGCTTA CCTCTCGCCTGGTTGCCTACCAATCTGCCCCGATACGCAAAACGCACCTACGCAACTGGCTTGCAGCTTACCTTT GGCAACATCAGCGGAGTTATGTCCCCTTTCTTGTATCCTAATTCGGAAGGCCCGCGCTTCGTCCGTGGGAACGCT GTCACTCTGGCAATGGTGGGATTTGCGGGGGTTGTATATGGTGTCATGTGGGTTTCCTACCGGGTTATCAACAAA CGCAGGGCCCAGGGATTGGAGGACGACAAAATATCATCGCTCTCAGAGCAGGCTATCCAAGAAATGGGCGATCGA AACCCCAGGTTCTTGTACAGCATTTAA |
| Gene | >Pro_DTO377G3_2|g4352.t1 ATGGGCCATGCTGAGCCTGACCTCGGCCCAGCCGATGAAATCAGCTTAGGGCCAACTCTTGATGAAGAACAGATC GAGAAAACTCTGATCAGGAAGATTGACCTGCATATCCTTCCTATCGTGGTGTTGTTGTATCTCTTCAGTTTCCTA GACCGAGGTACGTGGGGGTGGGATGCCTGACTCATCCCTTTGTGATTGCAACTGGCTTGTGCCAACTCGGAATCA AGAACATTGGCTGACTTGAATATGCAGTCAACATTGGAAATGCACGATTGTACGGCCTGGAAGAGGACTTGGGGC TTGTTGGCAACCAGTACCAAGTCTCGGTGTCTATCCTTTTTGTGACCTACTGTGTATGTATATCACGCAATTCAG TCACCGCACGGACGCTAATCCTCACGTTCAGTTCTTTGAGGTCCCTTCGAATCTCGTACTCAAGAAACTACGGCC GTCTCGGTATATTGCCACGATCTCAATTTTGTGGGGTATCATTGCAACCCTCACAGGAATCACTCGGGATTATGG TGACTTGGTTGCCTGTCGGATCCTACTCGGAGTCGTAGAAGCAGGTCTTTTCCCGGGCTTTATCACCTACCTCAC TCTCTTCTATAGCAAACGTGAGATTGCCTTGCGAACAAGCTACCTCTTTAGCAGTGCAGCTATTGCGGGAGCCTT TGGCGGGTTACTGGCTTATGGTATTGGGTTTATGGACGGCATCTGTGGACTTCGCGGCTGGCGTTGGATCATGAT CATCGAGGGGATTCCGACAGTTTTACTTGGTGTGGTGACTTGGTTCGCCTTGGCAGATGACCCGGACACAGCTTA TTATCTAAACAAAGAGGAGCGAGCGCTTGTTACCCTTCGCCGGAGTCGTTATATCGGCCAAACAGAGTCTGCACA GAAGTTTCACTGGGCGGATGTAAAAGAGGGTGTCTTAGACTGGAAGATCTGGGCGTTCTCCATTGGCCAGTTTGG TATTGATACCATGCTCTATGGATATAGTACCTTCCTTCCTACTATTATCAAAGGCATGGGAAATTGGACCACCGC CGAGGTCCAGGCATTGACAATCCCTTGCTATGCACTGGGTGCCTTTGCCTATCTGTGCGTTGCCTGGTTGAGCGA TCGCACCCAACACCGTGCATTTTTCATATGTCTCTTCTGCGCTATCTCAGTCGTTGGCTATGGAATCTTGATTTC GGACTCGTCCTCGGGTGTTCATTACTTTGGTGCCTTGATGGTCGCCCTGGGACTTTACGTTGCTGTCGGCTTACC TCTCGCCTGGTTGCCTACCAATCTGCCCCGATACGCAAAACGCACCTACGCAACTGGCTTGCAGCTTACCTTTGG CAACATCAGCGGAGTTATGTCCCCTTTCTTGTATCCTAATTCGGAAGGCCCGCGCTTCGTCCGTGGGAACGCTGT CACTCTGGCAATGGTGGGATTTGCGGGGGTTGTATATGGTGTCATGTGGGTTTCCTACCGGGTTATCAACAAACG CAGGGCCCAGGGATTGGAGGACGACAAAATATCATCGCTCTCAGAGCAGGCTATCCAAGAAATGGGCGATCGAAA CCCCAGGTTCTTGTACAGCATTTAA |