© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g4351.t1 |
| Gene name | |
| Location | scaffold_09:25615..27208 |
| Strand | - |
| Gene length (bp) | 1593 |
| Transcript length (bp) | 1593 |
| Coding sequence length (bp) | 1593 |
| Protein length (aa) | 531 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04646 | DUF604 | Protein of unknown function, DUF604 | 4.7E-06 | 294 | 374 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 9 | 26 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 261.59 | 154.55 | 368.62 |
| 5d_25C | Five days - 25 degrees Celsius | 134.71 | 79.11 | 190.32 |
| 7d_25C | Seven days - 25 degrees Celsius | 166.04 | 94.30 | 237.79 |
| 10d_25C | Ten days - 25 degrees Celsius | 84.10 | 50.07 | 118.14 |
| 7d_15C | Seven days - 15 degrees Celsius | 138.40 | 74.33 | 202.47 |
| 7d_30C | Seven days - 30 degrees Celsius | 82.03 | 49.95 | 114.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.040411 | yes |
| 3d_25C | 7d_15C | 0.004045 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.437583 | no |
| 5d_25C | 7d_15C | 0.943360 | no |
| 5d_25C | 7d_30C | 0.020140 | yes |
| 5d_25C | 10d_25C | 0.030434 | yes |
| 7d_25C | 7d_15C | 0.538153 | no |
| 7d_25C | 7d_30C | 0.001278 | yes |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.026584 | yes |
| 7d_15C | 10d_25C | 0.034793 | yes |
| 7d_30C | 10d_25C | 0.945749 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4351.t1 MPLFRMKTVFPLVALVTIGIFFFCMERYDRSAFLRFKHPIDRASFSGNKQPQVQTSAQSDSQQPASNTCEADPKL AAPLPFPEWLPRKNYTRAYFRPRHVNPRTEFHTLEEIEKPVLPPMVVMERGMVVSPENKPENFVCPEIIDVDVAA DDDVEETSKLLFGLATTVDRLDRLLPSLLYSYGNTKAGLIVLVPESDDDLEKQETYFRNRGLDLTLKASPLDFTA RYFGMVEAFTEHIRKHRPHTAWVGFSDDDTFFLSLPTIAEELKLFDESKKHYIGSLSEASWQVDTFGHIAFGGAG VFVSKPLLDVLMKHYEECQSWGEQPGDQKLGQCIQRFGDTPLTLWPSLYQMDMADPVDGVYESGRKIESMHHWNS WYSKDVVKMTTVSAAAGRKSVLRRWVFDQEESVSATGETLRHFWVMTNGYSLVKYTYGENVADDAINFDATEKTW PEDPRGYEDRLGPLRPAEEDGVAKDRWLLRDAFVVGENVHQFYVREEDEGHSVIEIVWLGPKGGGGGGVSDHHLR GTYQQ* |
| Coding | >Pro_DTO377G3_2|g4351.t1 ATGCCTCTATTTCGGATGAAGACGGTATTCCCGTTGGTGGCTCTGGTGACCATCGGAATATTTTTCTTTTGCATG GAACGCTACGACCGCTCAGCCTTCCTTCGGTTCAAGCACCCGATTGACCGTGCCTCCTTCAGTGGAAACAAGCAA CCTCAAGTACAAACGTCGGCACAATCTGATTCGCAGCAGCCTGCCAGTAACACCTGTGAGGCTGACCCGAAATTG GCTGCCCCCCTTCCCTTCCCCGAATGGCTCCCACGCAAGAACTACACTCGCGCCTATTTCCGTCCTCGTCATGTG AACCCTCGCACCGAGTTCCACACTTTGGAGGAAATCGAGAAGCCTGTACTCCCGCCTATGGTTGTCATGGAGCGC GGTATGGTCGTGTCTCCCGAGAACAAGCCGGAGAACTTTGTCTGCCCTGAGATCATCGACGTCGATGTAGCCGCC GATGACGATGTCGAGGAAACCTCCAAGCTTCTTTTCGGTCTGGCCACTACAGTCGACCGTTTGGACCGCCTGCTA CCCTCTTTGCTCTACTCATACGGAAACACCAAGGCCGGTCTGATTGTTCTGGTCCCTGAGTCTGACGACGACCTG GAGAAGCAAGAGACTTACTTCCGCAACCGCGGTCTGGACTTGACCCTCAAGGCCTCTCCTCTCGACTTCACTGCC CGTTACTTTGGTATGGTCGAGGCGTTCACCGAGCACATTCGCAAGCACCGCCCGCACACCGCCTGGGTTGGGTTC AGTGACGACGATACCTTCTTCCTGTCGCTCCCTACTATCGCCGAGGAATTGAAGCTCTTCGATGAAAGCAAGAAG CACTACATTGGATCTTTGTCTGAGGCCAGCTGGCAGGTGGATACTTTCGGCCACATTGCATTCGGTGGTGCCGGT GTGTTTGTCTCGAAGCCTCTTTTGGATGTCCTGATGAAGCACTACGAGGAGTGCCAGTCCTGGGGCGAGCAGCCC GGTGACCAAAAGCTTGGCCAGTGTATCCAACGGTTCGGTGACACCCCCCTGACTCTGTGGCCTTCGCTCTACCAG ATGGACATGGCAGACCCCGTGGACGGTGTTTACGAGTCAGGCCGCAAGATCGAATCAATGCACCACTGGAACAGT TGGTACAGCAAGGACGTGGTCAAGATGACCACCGTTTCTGCTGCTGCAGGCCGCAAATCTGTTCTCCGTCGCTGG GTCTTTGACCAGGAGGAGTCTGTGAGCGCTACTGGTGAGACTCTCCGTCACTTCTGGGTTATGACCAACGGCTAC TCGCTGGTGAAATATACGTACGGCGAGAATGTGGCGGATGATGCTATCAACTTTGATGCTACCGAAAAGACCTGG CCAGAAGACCCCCGCGGTTATGAAGACCGCCTGGGTCCCTTGCGTCCCGCAGAGGAAGATGGCGTTGCTAAGGAT CGGTGGTTGCTTCGTGATGCATTCGTTGTCGGTGAGAACGTGCACCAATTCTATGTTCGCGAAGAAGATGAGGGC CACAGCGTGATTGAGATAGTCTGGCTCGGTCCCAAGGGCGGTGGTGGCGGTGGTGTGAGTGACCATCATCTTCGC GGCACTTACCAGCAATAA |
| Transcript | >Pro_DTO377G3_2|g4351.t1 ATGCCTCTATTTCGGATGAAGACGGTATTCCCGTTGGTGGCTCTGGTGACCATCGGAATATTTTTCTTTTGCATG GAACGCTACGACCGCTCAGCCTTCCTTCGGTTCAAGCACCCGATTGACCGTGCCTCCTTCAGTGGAAACAAGCAA CCTCAAGTACAAACGTCGGCACAATCTGATTCGCAGCAGCCTGCCAGTAACACCTGTGAGGCTGACCCGAAATTG GCTGCCCCCCTTCCCTTCCCCGAATGGCTCCCACGCAAGAACTACACTCGCGCCTATTTCCGTCCTCGTCATGTG AACCCTCGCACCGAGTTCCACACTTTGGAGGAAATCGAGAAGCCTGTACTCCCGCCTATGGTTGTCATGGAGCGC GGTATGGTCGTGTCTCCCGAGAACAAGCCGGAGAACTTTGTCTGCCCTGAGATCATCGACGTCGATGTAGCCGCC GATGACGATGTCGAGGAAACCTCCAAGCTTCTTTTCGGTCTGGCCACTACAGTCGACCGTTTGGACCGCCTGCTA CCCTCTTTGCTCTACTCATACGGAAACACCAAGGCCGGTCTGATTGTTCTGGTCCCTGAGTCTGACGACGACCTG GAGAAGCAAGAGACTTACTTCCGCAACCGCGGTCTGGACTTGACCCTCAAGGCCTCTCCTCTCGACTTCACTGCC CGTTACTTTGGTATGGTCGAGGCGTTCACCGAGCACATTCGCAAGCACCGCCCGCACACCGCCTGGGTTGGGTTC AGTGACGACGATACCTTCTTCCTGTCGCTCCCTACTATCGCCGAGGAATTGAAGCTCTTCGATGAAAGCAAGAAG CACTACATTGGATCTTTGTCTGAGGCCAGCTGGCAGGTGGATACTTTCGGCCACATTGCATTCGGTGGTGCCGGT GTGTTTGTCTCGAAGCCTCTTTTGGATGTCCTGATGAAGCACTACGAGGAGTGCCAGTCCTGGGGCGAGCAGCCC GGTGACCAAAAGCTTGGCCAGTGTATCCAACGGTTCGGTGACACCCCCCTGACTCTGTGGCCTTCGCTCTACCAG ATGGACATGGCAGACCCCGTGGACGGTGTTTACGAGTCAGGCCGCAAGATCGAATCAATGCACCACTGGAACAGT TGGTACAGCAAGGACGTGGTCAAGATGACCACCGTTTCTGCTGCTGCAGGCCGCAAATCTGTTCTCCGTCGCTGG GTCTTTGACCAGGAGGAGTCTGTGAGCGCTACTGGTGAGACTCTCCGTCACTTCTGGGTTATGACCAACGGCTAC TCGCTGGTGAAATATACGTACGGCGAGAATGTGGCGGATGATGCTATCAACTTTGATGCTACCGAAAAGACCTGG CCAGAAGACCCCCGCGGTTATGAAGACCGCCTGGGTCCCTTGCGTCCCGCAGAGGAAGATGGCGTTGCTAAGGAT CGGTGGTTGCTTCGTGATGCATTCGTTGTCGGTGAGAACGTGCACCAATTCTATGTTCGCGAAGAAGATGAGGGC CACAGCGTGATTGAGATAGTCTGGCTCGGTCCCAAGGGCGGTGGTGGCGGTGGTGTGAGTGACCATCATCTTCGC GGCACTTACCAGCAATAA |
| Gene | >Pro_DTO377G3_2|g4351.t1 ATGCCTCTATTTCGGATGAAGACGGTATTCCCGTTGGTGGCTCTGGTGACCATCGGAATATTTTTCTTTTGCATG GAACGCTACGACCGCTCAGCCTTCCTTCGGTTCAAGCACCCGATTGACCGTGCCTCCTTCAGTGGAAACAAGCAA CCTCAAGTACAAACGTCGGCACAATCTGATTCGCAGCAGCCTGCCAGTAACACCTGTGAGGCTGACCCGAAATTG GCTGCCCCCCTTCCCTTCCCCGAATGGCTCCCACGCAAGAACTACACTCGCGCCTATTTCCGTCCTCGTCATGTG AACCCTCGCACCGAGTTCCACACTTTGGAGGAAATCGAGAAGCCTGTACTCCCGCCTATGGTTGTCATGGAGCGC GGTATGGTCGTGTCTCCCGAGAACAAGCCGGAGAACTTTGTCTGCCCTGAGATCATCGACGTCGATGTAGCCGCC GATGACGATGTCGAGGAAACCTCCAAGCTTCTTTTCGGTCTGGCCACTACAGTCGACCGTTTGGACCGCCTGCTA CCCTCTTTGCTCTACTCATACGGAAACACCAAGGCCGGTCTGATTGTTCTGGTCCCTGAGTCTGACGACGACCTG GAGAAGCAAGAGACTTACTTCCGCAACCGCGGTCTGGACTTGACCCTCAAGGCCTCTCCTCTCGACTTCACTGCC CGTTACTTTGGTATGGTCGAGGCGTTCACCGAGCACATTCGCAAGCACCGCCCGCACACCGCCTGGGTTGGGTTC AGTGACGACGATACCTTCTTCCTGTCGCTCCCTACTATCGCCGAGGAATTGAAGCTCTTCGATGAAAGCAAGAAG CACTACATTGGATCTTTGTCTGAGGCCAGCTGGCAGGTGGATACTTTCGGCCACATTGCATTCGGTGGTGCCGGT GTGTTTGTCTCGAAGCCTCTTTTGGATGTCCTGATGAAGCACTACGAGGAGTGCCAGTCCTGGGGCGAGCAGCCC GGTGACCAAAAGCTTGGCCAGTGTATCCAACGGTTCGGTGACACCCCCCTGACTCTGTGGCCTTCGCTCTACCAG ATGGACATGGCAGACCCCGTGGACGGTGTTTACGAGTCAGGCCGCAAGATCGAATCAATGCACCACTGGAACAGT TGGTACAGCAAGGACGTGGTCAAGATGACCACCGTTTCTGCTGCTGCAGGCCGCAAATCTGTTCTCCGTCGCTGG GTCTTTGACCAGGAGGAGTCTGTGAGCGCTACTGGTGAGACTCTCCGTCACTTCTGGGTTATGACCAACGGCTAC TCGCTGGTGAAATATACGTACGGCGAGAATGTGGCGGATGATGCTATCAACTTTGATGCTACCGAAAAGACCTGG CCAGAAGACCCCCGCGGTTATGAAGACCGCCTGGGTCCCTTGCGTCCCGCAGAGGAAGATGGCGTTGCTAAGGAT CGGTGGTTGCTTCGTGATGCATTCGTTGTCGGTGAGAACGTGCACCAATTCTATGTTCGCGAAGAAGATGAGGGC CACAGCGTGATTGAGATAGTCTGGCTCGGTCCCAAGGGCGGTGGTGGCGGTGGTGTGAGTGACCATCATCTTCGC GGCACTTACCAGCAATAA |