© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4341.t1 |
| Gene name | |
| Location | scaffold_08:740157..741515 |
| Strand | - |
| Gene length (bp) | 1358 |
| Transcript length (bp) | 1206 |
| Coding sequence length (bp) | 1206 |
| Protein length (aa) | 402 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.8E-05 | 253 | 324 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 14.86 | 6.49 | 23.24 |
| 5d_25C | Five days - 25 degrees Celsius | 16.57 | 7.23 | 25.91 |
| 7d_25C | Seven days - 25 degrees Celsius | 20.48 | 8.95 | 32.01 |
| 10d_25C | Ten days - 25 degrees Celsius | 7.29 | 2.30 | 12.28 |
| 7d_15C | Seven days - 15 degrees Celsius | 28.87 | 11.79 | 45.95 |
| 7d_30C | Seven days - 30 degrees Celsius | 34.78 | 18.34 | 51.23 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.804451 | no |
| 3d_25C | 7d_25C | 0.340086 | no |
| 3d_25C | 7d_15C | 0.039155 | yes |
| 3d_25C | 7d_30C | 0.001804 | yes |
| 3d_25C | 10d_25C | 0.033697 | yes |
| 5d_25C | 7d_25C | 0.565819 | no |
| 5d_25C | 7d_15C | 0.081710 | no |
| 5d_25C | 7d_30C | 0.004450 | yes |
| 5d_25C | 10d_25C | 0.009124 | yes |
| 7d_25C | 7d_15C | 0.327604 | no |
| 7d_25C | 7d_30C | 0.056706 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.615177 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4341.t1 MPLLGRDKYHPRSRRSDDEFVVFLQGIPPHCRWQELKDLVRQTALHIRQAVVYDDSHGFPTGLGQIIVKNEDEAW RTYHRLSTSGWEGQSLVVTLSRTSTPTKPIAGPTRSPAMMSTGYISGHSTPPSVHGNMAMPPSPVSPESSHPATP PYSYSEYGVMMVPIPMPPQGFMTMMPDSHAPPMQCFPPSPVMNGPMYEPYWNMMPGYQMSPPQHMHHQSDNQSQN HQNYHHRESRAKGTNLGSPFIYSDRRAIIIENLNPATTCTDLKILLQAAGAVQKCRIITMDSADFNGRLRGLVTM RTADEAQCAVTMFNNLSFFGSRIRVKLDRGSRLTRAVKVDGMLGVAGSDTTASVPGNRDMCQSWADEMTAEANAV GVSKPLVIDGSGLKKSVEISPISAPT* |
| Coding | >Pro_DTO377G3_2|g4341.t1 ATGCCTCTTCTCGGTCGTGATAAATACCATCCCAGATCGCGCAGGTCGGATGATGAGTTTGTCGTATTCCTTCAA GGCATTCCACCTCATTGCCGCTGGCAAGAACTCAAAGATCTCGTCCGCCAAACTGCATTGCATATTCGCCAGGCA GTAGTATACGATGATAGCCATGGATTCCCCACCGGACTCGGCCAGATCATCGTCAAGAATGAAGACGAGGCCTGG CGAACGTACCATCGACTTTCGACCAGCGGATGGGAGGGTCAGAGCCTGGTCGTCACACTTTCGCGGACCAGTACG CCCACCAAGCCCATTGCCGGGCCTACCAGAAGTCCAGCAATGATGTCCACGGGCTATATCTCTGGCCACTCCACA CCTCCATCAGTACATGGAAACATGGCAATGCCCCCTTCACCCGTCTCGCCAGAATCCTCGCACCCCGCCACTCCA CCATACTCATACTCAGAGTATGGCGTCATGATGGTACCCATACCAATGCCACCCCAAGGATTCATGACTATGATG CCAGATTCACACGCACCACCGATGCAGTGTTTCCCCCCATCCCCAGTAATGAACGGCCCAATGTACGAGCCATAT TGGAACATGATGCCAGGTTATCAGATGTCGCCTCCACAACACATGCACCACCAGAGCGACAATCAATCACAGAAC CACCAGAACTACCACCATCGCGAATCACGCGCCAAAGGCACAAACCTTGGCTCTCCATTCATCTATTCAGACCGA CGAGCCATCATAATCGAGAACTTGAATCCGGCTACTACTTGCACCGATCTGAAAATCCTTCTTCAAGCAGCCGGT GCTGTCCAGAAATGCAGAATAATCACCATGGACTCGGCCGACTTCAATGGCCGGCTCCGCGGCTTGGTTACCATG CGAACAGCAGACGAAGCCCAGTGCGCTGTGACCATGTTCAACAATTTGAGTTTCTTTGGGTCACGGATCAGGGTG AAGCTTGATCGTGGCTCTCGTCTCACGCGGGCCGTAAAAGTCGACGGAATGTTAGGTGTTGCTGGCTCAGACACC ACAGCCTCGGTACCTGGCAATAGGGATATGTGTCAGTCATGGGCTGATGAGATGACCGCAGAAGCCAATGCTGTT GGTGTTTCTAAGCCTCTGGTGATAGATGGGTCTGGGTTGAAAAAGTCGGTTGAGATTTCACCAATATCTGCGCCT ACGTGA |
| Transcript | >Pro_DTO377G3_2|g4341.t1 ATGCCTCTTCTCGGTCGTGATAAATACCATCCCAGATCGCGCAGGTCGGATGATGAGTTTGTCGTATTCCTTCAA GGCATTCCACCTCATTGCCGCTGGCAAGAACTCAAAGATCTCGTCCGCCAAACTGCATTGCATATTCGCCAGGCA GTAGTATACGATGATAGCCATGGATTCCCCACCGGACTCGGCCAGATCATCGTCAAGAATGAAGACGAGGCCTGG CGAACGTACCATCGACTTTCGACCAGCGGATGGGAGGGTCAGAGCCTGGTCGTCACACTTTCGCGGACCAGTACG CCCACCAAGCCCATTGCCGGGCCTACCAGAAGTCCAGCAATGATGTCCACGGGCTATATCTCTGGCCACTCCACA CCTCCATCAGTACATGGAAACATGGCAATGCCCCCTTCACCCGTCTCGCCAGAATCCTCGCACCCCGCCACTCCA CCATACTCATACTCAGAGTATGGCGTCATGATGGTACCCATACCAATGCCACCCCAAGGATTCATGACTATGATG CCAGATTCACACGCACCACCGATGCAGTGTTTCCCCCCATCCCCAGTAATGAACGGCCCAATGTACGAGCCATAT TGGAACATGATGCCAGGTTATCAGATGTCGCCTCCACAACACATGCACCACCAGAGCGACAATCAATCACAGAAC CACCAGAACTACCACCATCGCGAATCACGCGCCAAAGGCACAAACCTTGGCTCTCCATTCATCTATTCAGACCGA CGAGCCATCATAATCGAGAACTTGAATCCGGCTACTACTTGCACCGATCTGAAAATCCTTCTTCAAGCAGCCGGT GCTGTCCAGAAATGCAGAATAATCACCATGGACTCGGCCGACTTCAATGGCCGGCTCCGCGGCTTGGTTACCATG CGAACAGCAGACGAAGCCCAGTGCGCTGTGACCATGTTCAACAATTTGAGTTTCTTTGGGTCACGGATCAGGGTG AAGCTTGATCGTGGCTCTCGTCTCACGCGGGCCGTAAAAGTCGACGGAATGTTAGGTGTTGCTGGCTCAGACACC ACAGCCTCGGTACCTGGCAATAGGGATATGTGTCAGTCATGGGCTGATGAGATGACCGCAGAAGCCAATGCTGTT GGTGTTTCTAAGCCTCTGGTGATAGATGGGTCTGGGTTGAAAAAGTCGGTTGAGATTTCACCAATATCTGCGCCT ACGTGA |
| Gene | >Pro_DTO377G3_2|g4341.t1 ATGCCTCTTCTCGGTCGTGATAAATACCATCCCAGATCGCGCAGGTCGGATGATGAGTTTGTCGTATTCCTTCAA GGCGTGAGTTTGATATCTATGTCAAATGCGTTCAAGTACTGACAAGAATTCCAGATTCCACCTCATTGCCGCTGG CAAGAACTCAAAGATCTCGTCCGCCAAACTGCATTGCATATTCGCCAGGCAGTAGTATACGATGATAGCCATGGA TTCCCCACCGGACTCGGCCAGATCATCGTCAAGAATGAAGACGAGGCCTGGCGAACGTACCGTACGTGTCTATCC CGCAATCCCCAATGATCCGCCCTAACAACAACACAGATCGACTTTCGACCAGCGGATGGGAGGGTCAGAGCCTGG TCGTCACACTTTCGCGGACCAGTACGCCCACCAAGCCCATTGCCGGGCCTACCAGAAGTCCAGCAATGATGTCCA CGGGCTATATCTCTGGCCACTCCACACCTCCATCAGTACATGGAAACATGGCAATGCCCCCTTCACCCGTCTCGC CAGAGTGAGTCTATATCCTCAAGTATAAAATATGAAAGCTAATCTTCCTCCCCAGATCCTCGCACCCCGCCACTC CACCATACTCATACTCAGAGTATGGCGTCATGATGGTACCCATACCAATGCCACCCCAAGGATTCATGACTATGA TGCCAGATTCACACGCACCACCGATGCAGTGTTTCCCCCCATCCCCAGTAATGAACGGCCCAATGTACGAGCCAT ATTGGAACATGATGCCAGGTTATCAGATGTCGCCTCCACAACACATGCACCACCAGAGCGACAATCAATCACAGA ACCACCAGAACTACCACCATCGCGAATCACGCGCCAAAGGCACAAACCTTGGCTCTCCATTCATCTATTCAGACC GACGAGCCATCATAATCGAGAACTTGAATCCGGCTACTACTTGCACCGATCTGAAAATCCTTCTTCAAGCAGCCG GTGCTGTCCAGAAATGCAGAATAATCACCATGGACTCGGCCGACTTCAATGGCCGGCTCCGCGGCTTGGTTACCA TGCGAACAGCAGACGAAGCCCAGTGCGCTGTGACCATGTTCAACAATTTGAGTTTCTTTGGGTCACGGATCAGGG TGAAGCTTGATCGTGGCTCTCGTCTCACGCGGGCCGTAAAAGTCGACGGAATGTTAGGTGTTGCTGGCTCAGACA CCACAGCCTCGGTACCTGGCAATAGGGATATGTGTCAGTCATGGGCTGATGAGATGACCGCAGAAGCCAATGCTG TTGGTGTTTCTAAGCCTCTGGTGATAGATGGGTCTGGGTTGAAAAAGTCGGTTGAGATTTCACCAATATCTGCGC CTACGTGA |