Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4341.t1
Gene name
Locationscaffold_08:740157..741515
Strand-
Gene length (bp)1358
Transcript length (bp)1206
Coding sequence length (bp)1206
Protein length (aa) 402

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.8E-05 253 324

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 34 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 14.86 6.49 23.24
5d_25C Five days - 25 degrees Celsius 16.57 7.23 25.91
7d_25C Seven days - 25 degrees Celsius 20.48 8.95 32.01
10d_25C Ten days - 25 degrees Celsius 7.29 2.30 12.28
7d_15C Seven days - 15 degrees Celsius 28.87 11.79 45.95
7d_30C Seven days - 30 degrees Celsius 34.78 18.34 51.23

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.804451 no
3d_25C 7d_25C 0.340086 no
3d_25C 7d_15C 0.039155 yes
3d_25C 7d_30C 0.001804 yes
3d_25C 10d_25C 0.033697 yes
5d_25C 7d_25C 0.565819 no
5d_25C 7d_15C 0.081710 no
5d_25C 7d_30C 0.004450 yes
5d_25C 10d_25C 0.009124 yes
7d_25C 7d_15C 0.327604 no
7d_25C 7d_30C 0.056706 no
7d_25C 10d_25C 0.000700 yes
7d_15C 7d_30C 0.615177 no
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.000700 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4341.t1
MPLLGRDKYHPRSRRSDDEFVVFLQGIPPHCRWQELKDLVRQTALHIRQAVVYDDSHGFPTGLGQIIVKNEDEAW
RTYHRLSTSGWEGQSLVVTLSRTSTPTKPIAGPTRSPAMMSTGYISGHSTPPSVHGNMAMPPSPVSPESSHPATP
PYSYSEYGVMMVPIPMPPQGFMTMMPDSHAPPMQCFPPSPVMNGPMYEPYWNMMPGYQMSPPQHMHHQSDNQSQN
HQNYHHRESRAKGTNLGSPFIYSDRRAIIIENLNPATTCTDLKILLQAAGAVQKCRIITMDSADFNGRLRGLVTM
RTADEAQCAVTMFNNLSFFGSRIRVKLDRGSRLTRAVKVDGMLGVAGSDTTASVPGNRDMCQSWADEMTAEANAV
GVSKPLVIDGSGLKKSVEISPISAPT*
Coding >Pro_DTO377G3_2|g4341.t1
ATGCCTCTTCTCGGTCGTGATAAATACCATCCCAGATCGCGCAGGTCGGATGATGAGTTTGTCGTATTCCTTCAA
GGCATTCCACCTCATTGCCGCTGGCAAGAACTCAAAGATCTCGTCCGCCAAACTGCATTGCATATTCGCCAGGCA
GTAGTATACGATGATAGCCATGGATTCCCCACCGGACTCGGCCAGATCATCGTCAAGAATGAAGACGAGGCCTGG
CGAACGTACCATCGACTTTCGACCAGCGGATGGGAGGGTCAGAGCCTGGTCGTCACACTTTCGCGGACCAGTACG
CCCACCAAGCCCATTGCCGGGCCTACCAGAAGTCCAGCAATGATGTCCACGGGCTATATCTCTGGCCACTCCACA
CCTCCATCAGTACATGGAAACATGGCAATGCCCCCTTCACCCGTCTCGCCAGAATCCTCGCACCCCGCCACTCCA
CCATACTCATACTCAGAGTATGGCGTCATGATGGTACCCATACCAATGCCACCCCAAGGATTCATGACTATGATG
CCAGATTCACACGCACCACCGATGCAGTGTTTCCCCCCATCCCCAGTAATGAACGGCCCAATGTACGAGCCATAT
TGGAACATGATGCCAGGTTATCAGATGTCGCCTCCACAACACATGCACCACCAGAGCGACAATCAATCACAGAAC
CACCAGAACTACCACCATCGCGAATCACGCGCCAAAGGCACAAACCTTGGCTCTCCATTCATCTATTCAGACCGA
CGAGCCATCATAATCGAGAACTTGAATCCGGCTACTACTTGCACCGATCTGAAAATCCTTCTTCAAGCAGCCGGT
GCTGTCCAGAAATGCAGAATAATCACCATGGACTCGGCCGACTTCAATGGCCGGCTCCGCGGCTTGGTTACCATG
CGAACAGCAGACGAAGCCCAGTGCGCTGTGACCATGTTCAACAATTTGAGTTTCTTTGGGTCACGGATCAGGGTG
AAGCTTGATCGTGGCTCTCGTCTCACGCGGGCCGTAAAAGTCGACGGAATGTTAGGTGTTGCTGGCTCAGACACC
ACAGCCTCGGTACCTGGCAATAGGGATATGTGTCAGTCATGGGCTGATGAGATGACCGCAGAAGCCAATGCTGTT
GGTGTTTCTAAGCCTCTGGTGATAGATGGGTCTGGGTTGAAAAAGTCGGTTGAGATTTCACCAATATCTGCGCCT
ACGTGA
Transcript >Pro_DTO377G3_2|g4341.t1
ATGCCTCTTCTCGGTCGTGATAAATACCATCCCAGATCGCGCAGGTCGGATGATGAGTTTGTCGTATTCCTTCAA
GGCATTCCACCTCATTGCCGCTGGCAAGAACTCAAAGATCTCGTCCGCCAAACTGCATTGCATATTCGCCAGGCA
GTAGTATACGATGATAGCCATGGATTCCCCACCGGACTCGGCCAGATCATCGTCAAGAATGAAGACGAGGCCTGG
CGAACGTACCATCGACTTTCGACCAGCGGATGGGAGGGTCAGAGCCTGGTCGTCACACTTTCGCGGACCAGTACG
CCCACCAAGCCCATTGCCGGGCCTACCAGAAGTCCAGCAATGATGTCCACGGGCTATATCTCTGGCCACTCCACA
CCTCCATCAGTACATGGAAACATGGCAATGCCCCCTTCACCCGTCTCGCCAGAATCCTCGCACCCCGCCACTCCA
CCATACTCATACTCAGAGTATGGCGTCATGATGGTACCCATACCAATGCCACCCCAAGGATTCATGACTATGATG
CCAGATTCACACGCACCACCGATGCAGTGTTTCCCCCCATCCCCAGTAATGAACGGCCCAATGTACGAGCCATAT
TGGAACATGATGCCAGGTTATCAGATGTCGCCTCCACAACACATGCACCACCAGAGCGACAATCAATCACAGAAC
CACCAGAACTACCACCATCGCGAATCACGCGCCAAAGGCACAAACCTTGGCTCTCCATTCATCTATTCAGACCGA
CGAGCCATCATAATCGAGAACTTGAATCCGGCTACTACTTGCACCGATCTGAAAATCCTTCTTCAAGCAGCCGGT
GCTGTCCAGAAATGCAGAATAATCACCATGGACTCGGCCGACTTCAATGGCCGGCTCCGCGGCTTGGTTACCATG
CGAACAGCAGACGAAGCCCAGTGCGCTGTGACCATGTTCAACAATTTGAGTTTCTTTGGGTCACGGATCAGGGTG
AAGCTTGATCGTGGCTCTCGTCTCACGCGGGCCGTAAAAGTCGACGGAATGTTAGGTGTTGCTGGCTCAGACACC
ACAGCCTCGGTACCTGGCAATAGGGATATGTGTCAGTCATGGGCTGATGAGATGACCGCAGAAGCCAATGCTGTT
GGTGTTTCTAAGCCTCTGGTGATAGATGGGTCTGGGTTGAAAAAGTCGGTTGAGATTTCACCAATATCTGCGCCT
ACGTGA
Gene >Pro_DTO377G3_2|g4341.t1
ATGCCTCTTCTCGGTCGTGATAAATACCATCCCAGATCGCGCAGGTCGGATGATGAGTTTGTCGTATTCCTTCAA
GGCGTGAGTTTGATATCTATGTCAAATGCGTTCAAGTACTGACAAGAATTCCAGATTCCACCTCATTGCCGCTGG
CAAGAACTCAAAGATCTCGTCCGCCAAACTGCATTGCATATTCGCCAGGCAGTAGTATACGATGATAGCCATGGA
TTCCCCACCGGACTCGGCCAGATCATCGTCAAGAATGAAGACGAGGCCTGGCGAACGTACCGTACGTGTCTATCC
CGCAATCCCCAATGATCCGCCCTAACAACAACACAGATCGACTTTCGACCAGCGGATGGGAGGGTCAGAGCCTGG
TCGTCACACTTTCGCGGACCAGTACGCCCACCAAGCCCATTGCCGGGCCTACCAGAAGTCCAGCAATGATGTCCA
CGGGCTATATCTCTGGCCACTCCACACCTCCATCAGTACATGGAAACATGGCAATGCCCCCTTCACCCGTCTCGC
CAGAGTGAGTCTATATCCTCAAGTATAAAATATGAAAGCTAATCTTCCTCCCCAGATCCTCGCACCCCGCCACTC
CACCATACTCATACTCAGAGTATGGCGTCATGATGGTACCCATACCAATGCCACCCCAAGGATTCATGACTATGA
TGCCAGATTCACACGCACCACCGATGCAGTGTTTCCCCCCATCCCCAGTAATGAACGGCCCAATGTACGAGCCAT
ATTGGAACATGATGCCAGGTTATCAGATGTCGCCTCCACAACACATGCACCACCAGAGCGACAATCAATCACAGA
ACCACCAGAACTACCACCATCGCGAATCACGCGCCAAAGGCACAAACCTTGGCTCTCCATTCATCTATTCAGACC
GACGAGCCATCATAATCGAGAACTTGAATCCGGCTACTACTTGCACCGATCTGAAAATCCTTCTTCAAGCAGCCG
GTGCTGTCCAGAAATGCAGAATAATCACCATGGACTCGGCCGACTTCAATGGCCGGCTCCGCGGCTTGGTTACCA
TGCGAACAGCAGACGAAGCCCAGTGCGCTGTGACCATGTTCAACAATTTGAGTTTCTTTGGGTCACGGATCAGGG
TGAAGCTTGATCGTGGCTCTCGTCTCACGCGGGCCGTAAAAGTCGACGGAATGTTAGGTGTTGCTGGCTCAGACA
CCACAGCCTCGGTACCTGGCAATAGGGATATGTGTCAGTCATGGGCTGATGAGATGACCGCAGAAGCCAATGCTG
TTGGTGTTTCTAAGCCTCTGGTGATAGATGGGTCTGGGTTGAAAAAGTCGGTTGAGATTTCACCAATATCTGCGC
CTACGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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