© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g4338.t1 |
| Gene name | |
| Location | scaffold_08:735191..736212 |
| Strand | + |
| Gene length (bp) | 1021 |
| Transcript length (bp) | 897 |
| Coding sequence length (bp) | 897 |
| Protein length (aa) | 299 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13405 | EF-hand_6 | EF-hand domain | 1.3E-06 | 130 | 159 |
| PF13499 | EF-hand_7 | EF-hand domain pair | 1.1E-07 | 130 | 224 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005509 | calcium ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 34.72 | 17.55 | 51.89 |
| 5d_25C | Five days - 25 degrees Celsius | 19.04 | 7.74 | 30.33 |
| 7d_25C | Seven days - 25 degrees Celsius | 22.65 | 9.39 | 35.91 |
| 10d_25C | Ten days - 25 degrees Celsius | 10.73 | 3.18 | 18.28 |
| 7d_15C | Seven days - 15 degrees Celsius | 20.50 | 7.13 | 33.86 |
| 7d_30C | Seven days - 30 degrees Celsius | 20.65 | 8.85 | 32.45 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.049004 | yes |
| 3d_25C | 7d_25C | 0.163473 | no |
| 3d_25C | 7d_15C | 0.108929 | no |
| 3d_25C | 7d_30C | 0.082459 | no |
| 3d_25C | 10d_25C | 0.001278 | yes |
| 5d_25C | 7d_25C | 0.682570 | no |
| 5d_25C | 7d_15C | 0.887394 | no |
| 5d_25C | 7d_30C | 0.864545 | no |
| 5d_25C | 10d_25C | 0.121015 | no |
| 7d_25C | 7d_15C | 0.836512 | no |
| 7d_25C | 7d_30C | 0.838748 | no |
| 7d_25C | 10d_25C | 0.029770 | yes |
| 7d_15C | 7d_30C | 0.989327 | no |
| 7d_15C | 10d_25C | 0.081872 | no |
| 7d_30C | 10d_25C | 0.065980 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4338.t1 MANNPTFKPSPLSFGSPRASPFRRPSTPNSPPSASRTGGTPGSSPSRAYTPMVSPSKLNQSYTVEDGESRSPKNE RPIPQPNFAREFSPSPTKGGKSPGSLSPIHGSRTGGVASPAGDAAGKLPAQQVREIREAFQVLDRDNDGLVDKDD VIDVLTTLGQDSSSSTLSRFFPPGAGNTMNFPTFLNTLSGLMASMSPSQELLNALAAFDDDDSGQIDATELRDAL LHTSPEDGEERLTERQIDEVFSGFIGRPAFIGRGAKSGGMGKRGEVFQYHDFVRSIMGGDNGNSAKNEGDAHV* |
| Coding | >Pro_DTO377G3_2|g4338.t1 ATGGCCAACAATCCCACATTCAAACCATCGCCGTTATCCTTTGGGTCGCCGAGGGCATCCCCGTTCCGGCGCCCA TCCACTCCAAATTCCCCGCCTTCGGCCAGTCGCACAGGAGGCACCCCGGGGAGCTCTCCCAGTCGGGCATATACA CCTATGGTATCTCCTAGCAAGCTCAATCAATCATATACAGTGGAGGATGGTGAATCGCGTTCTCCGAAGAACGAG CGGCCCATTCCCCAGCCGAATTTTGCCAGAGAGTTCTCTCCTTCCCCAACGAAAGGAGGAAAGTCGCCAGGCAGC TTATCCCCAATCCATGGGTCAAGGACGGGTGGAGTTGCAAGCCCAGCTGGCGACGCGGCTGGGAAGCTGCCAGCG CAACAAGTGAGGGAGATCAGAGAAGCTTTCCAGGTTCTCGATAGGGATAACGACGGGCTTGTGGACAAAGATGAT GTGATTGATGTGCTGACAACTTTGGGCCAAGACTCGTCATCCTCTACGCTCTCGCGCTTCTTTCCACCAGGAGCA GGCAATACTATGAATTTTCCAACCTTCTTGAATACCCTTTCTGGGCTCATGGCATCGATGTCACCTTCACAAGAG CTTCTCAACGCTCTTGCTGCGTTTGATGATGATGACAGCGGGCAAATCGATGCCACGGAATTACGTGATGCTCTC CTACATACCTCCCCAGAAGATGGAGAGGAAAGATTGACTGAGAGACAGATCGATGAAGTCTTCAGTGGGTTTATA GGGCGCCCAGCATTTATTGGTCGGGGAGCGAAGTCAGGCGGGATGGGTAAGAGGGGTGAGGTTTTCCAGTATCAC GACTTCGTGCGCAGCATCATGGGTGGGGATAATGGAAATAGTGCCAAGAATGAAGGAGATGCACATGTATGA |
| Transcript | >Pro_DTO377G3_2|g4338.t1 ATGGCCAACAATCCCACATTCAAACCATCGCCGTTATCCTTTGGGTCGCCGAGGGCATCCCCGTTCCGGCGCCCA TCCACTCCAAATTCCCCGCCTTCGGCCAGTCGCACAGGAGGCACCCCGGGGAGCTCTCCCAGTCGGGCATATACA CCTATGGTATCTCCTAGCAAGCTCAATCAATCATATACAGTGGAGGATGGTGAATCGCGTTCTCCGAAGAACGAG CGGCCCATTCCCCAGCCGAATTTTGCCAGAGAGTTCTCTCCTTCCCCAACGAAAGGAGGAAAGTCGCCAGGCAGC TTATCCCCAATCCATGGGTCAAGGACGGGTGGAGTTGCAAGCCCAGCTGGCGACGCGGCTGGGAAGCTGCCAGCG CAACAAGTGAGGGAGATCAGAGAAGCTTTCCAGGTTCTCGATAGGGATAACGACGGGCTTGTGGACAAAGATGAT GTGATTGATGTGCTGACAACTTTGGGCCAAGACTCGTCATCCTCTACGCTCTCGCGCTTCTTTCCACCAGGAGCA GGCAATACTATGAATTTTCCAACCTTCTTGAATACCCTTTCTGGGCTCATGGCATCGATGTCACCTTCACAAGAG CTTCTCAACGCTCTTGCTGCGTTTGATGATGATGACAGCGGGCAAATCGATGCCACGGAATTACGTGATGCTCTC CTACATACCTCCCCAGAAGATGGAGAGGAAAGATTGACTGAGAGACAGATCGATGAAGTCTTCAGTGGGTTTATA GGGCGCCCAGCATTTATTGGTCGGGGAGCGAAGTCAGGCGGGATGGGTAAGAGGGGTGAGGTTTTCCAGTATCAC GACTTCGTGCGCAGCATCATGGGTGGGGATAATGGAAATAGTGCCAAGAATGAAGGAGATGCACATGTATGA |
| Gene | >Pro_DTO377G3_2|g4338.t1 ATGGTAACTAAGGATCCTGAGGGATGATATAACTATTAAAAACTAATCAACAATGACCCAGGCCAACAATCCCAC ATTCAAACCATCGCCGTTATCCTTTGGGTCGCCGAGGGCATCCCCGTTCCGGCGCCCATCCACTCCAAATTCCCC GCCTTCGGCCAGTCGCACAGGAGGCACCCCGGGGAGCTCTCCCAGTCGGGCATATACACCTATGGTATCTCCTAG CAAGCTCAATCAATCATATACAGTGGAGGATGGTGAATCGCGTTCTCCGAAGAACGAGCGGCCCATTCCCCAGCC GAATTTTGCCAGAGAGTTCTCTCCTTCCCCAACGAAAGGAGGAAAGTCGCCAGGCAGCTTATCCCCAATCCATGG GTCAAGGACGGGTGGAGTTGCAAGCCCAGCTGGCGACGCGGCTGGGAAGCTGCCAGCGCAACAAGTGAGGGAGAT CAGAGAAGCTTTCCAGGTTCTCGATAGGGATAACGACGGGCTTGTGGACAAAGATGATGTGATTGATGTGCTGAC AACTTTGGGTAGGAGAAAATCTACCTATATTTTTTGGAAATTCGGACGAGGGACTAATCCGAGTATCTGAACAGG CCAAGACTCGTCATCCTCTACGCTCTCGCGCTTCTTTCCACCAGGAGCAGGCAATACTATGAATTTTCCAACCTT CTTGAATACCCTTTCTGGGCTCATGGCATCGATGTCACCTTCACAAGAGCTTCTCAACGCTCTTGCTGCGTTTGA TGATGATGACAGCGGGCAAATCGATGCCACGGAATTACGTGATGCTCTCCTACATACCTCCCCAGAAGATGGAGA GGAAAGATTGACTGAGAGACAGATCGATGAAGTCTTCAGTGGGTTTATAGGGCGCCCAGCATTTATTGGTCGGGG AGCGAAGTCAGGCGGGATGGGTAAGAGGGGTGAGGTTTTCCAGTATCACGACTTCGTGCGCAGCATCATGGGTGG GGATAATGGAAATAGTGCCAAGAATGAAGGAGATGCACATGTATGA |