© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4328.t1 |
| Gene name | |
| Location | scaffold_08:709062..711400 |
| Strand | - |
| Gene length (bp) | 2338 |
| Transcript length (bp) | 2208 |
| Coding sequence length (bp) | 2208 |
| Protein length (aa) | 736 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 101 | 123 | 22 |
| 3 | 133 | 155 | 22 |
| 4 | 176 | 198 | 22 |
| 5 | 202 | 221 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 6.59 | 2.77 | 10.41 |
| 5d_25C | Five days - 25 degrees Celsius | 6.93 | 2.97 | 10.89 |
| 7d_25C | Seven days - 25 degrees Celsius | 7.83 | 3.47 | 12.20 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.65 | 2.26 | 9.03 |
| 7d_15C | Seven days - 15 degrees Celsius | 7.38 | 3.21 | 11.54 |
| 7d_30C | Seven days - 30 degrees Celsius | 6.94 | 2.99 | 10.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.917051 | no |
| 3d_25C | 7d_25C | 0.675404 | no |
| 3d_25C | 7d_15C | 0.797482 | no |
| 3d_25C | 7d_30C | 0.914963 | no |
| 3d_25C | 10d_25C | 0.719568 | no |
| 5d_25C | 7d_25C | 0.772370 | no |
| 5d_25C | 7d_15C | 0.892492 | no |
| 5d_25C | 7d_30C | 0.996470 | no |
| 5d_25C | 10d_25C | 0.594703 | no |
| 7d_25C | 7d_15C | 0.896035 | no |
| 7d_25C | 7d_30C | 0.776772 | no |
| 7d_25C | 10d_25C | 0.345101 | no |
| 7d_15C | 7d_30C | 0.899367 | no |
| 7d_15C | 10d_25C | 0.459406 | no |
| 7d_30C | 10d_25C | 0.592526 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4328.t1 MSNSDLAAAGSSTYSSNTLHVGDGTWDSGRDTFLLPNLMGVNFETMRYNGMGNRFKDMAGYHSIIIAHGVIATIV FLGIVPISTFIIRYYSRWNPYWAFKLHAWCQVLTLLLTTVVFVLGWFAVGPQRSLTNPHHGIGLAIYVLVIFQVL WGWFVHKKESKRRRVHVPLKLVVHRWLGRALLLLGIAQIPLGLTLYGSPKVLFILFALTAFGYLVLYFLLSYRYD FEGYHMGSDHGDDRSHYTGPSEISEHHGNHAAEALAAGAAGAGLASMFRRRSSSRHPSHAYEDSRTSISDEKYSD EASRHHGGGGFGKKLLELGALAGAGLMAKNFWNRRKKREDDAESGRYRPAHSRSTSHTDESLSRIEDGRPEPTHH TPLNRPPSRVPSRSQSPGSSYYYNSTYLTEPPKRNASHGVRDAVLGAGAFAAVKRLFSRGKKDDEEKRRLEDIRR REDEDEALQRANSKRRPQTGGSFYPRRRASSYSETDLTETDLSRPPPRHASHGESLLTAEPLASGAVHSVVSDMP PMPPSHQQFSEDPHSRHSLAHDGAEFASGAAAGAALDAAARRNRSSSRRREDDVASPPVSVKVKMHNDGRHVTLR RLTEEEAAASREARRRERRSSRRRNSSAGSLSGNEDAGHDRWRRVEELERQQDEQMRREQAAAAARLAPPQAPSG SMPPPIPAPSSNPYGPGSVTSPTYTGTEMSGSYANNRRRRRAERARTRQERQQQHGVEFT* |
| Coding | >Pro_DTO377G3_2|g4328.t1 ATGTCAAACTCAGATCTCGCCGCTGCAGGGAGCAGCACATATTCATCCAATACCCTTCATGTTGGGGATGGCACC TGGGACTCTGGGCGGGATACCTTCCTACTGCCCAATTTGATGGGGGTCAACTTTGAGACGATGCGATACAATGGC ATGGGGAACCGTTTCAAGGATATGGCCGGGTACCATTCCATAATCATCGCGCACGGCGTCATTGCAACAATCGTT TTCTTGGGCATCGTCCCAATATCAACTTTCATAATCCGATATTACTCCCGATGGAATCCTTACTGGGCATTCAAA TTGCATGCTTGGTGCCAGGTACTTACCCTGCTCTTGACCACGGTTGTGTTTGTGCTTGGGTGGTTCGCCGTTGGG CCACAAAGAAGCCTAACCAACCCACATCATGGAATCGGCCTGGCAATCTATGTTTTGGTTATTTTTCAGGTGCTG TGGGGCTGGTTTGTGCACAAGAAAGAGAGTAAGAGACGGCGAGTTCACGTTCCTTTGAAACTGGTGGTTCACCGG TGGCTGGGTCGTGCACTTCTACTTCTCGGAATTGCTCAAATTCCACTAGGACTCACGCTCTACGGTTCGCCAAAG GTCCTATTCATCCTATTCGCGCTGACAGCTTTCGGCTACTTGGTTCTTTACTTTTTACTTTCCTACCGATATGAC TTTGAAGGATACCACATGGGAAGTGACCACGGTGATGACCGCAGTCATTATACAGGACCTTCAGAGATATCAGAG CACCATGGCAATCATGCGGCAGAAGCTCTCGCCGCCGGCGCTGCGGGTGCTGGCCTAGCTTCAATGTTTCGACGG CGTTCAAGCAGTCGCCACCCAAGCCATGCTTATGAAGACTCTCGCACATCTATCTCTGATGAAAAATATTCAGAT GAAGCTTCCCGTCATCATGGTGGTGGTGGTTTCGGCAAGAAACTCCTCGAGCTTGGTGCACTGGCTGGGGCTGGT CTCATGGCCAAGAATTTCTGGAATCGTCGAAAAAAGCGAGAAGATGATGCCGAATCGGGTCGTTACAGACCCGCC CATTCGCGCAGTACTAGCCACACGGATGAATCTCTCAGCAGGATAGAAGATGGTCGACCGGAGCCGACACACCAC ACGCCCCTTAATCGACCACCGAGCCGTGTACCAAGCAGGTCCCAAAGCCCGGGGTCGTCTTACTATTACAACAGC ACATATCTCACTGAGCCTCCTAAGCGAAACGCTTCTCATGGGGTTAGAGACGCTGTTCTGGGTGCAGGTGCTTTT GCTGCCGTGAAGCGACTGTTTAGCCGCGGTAAAAAGGACGATGAAGAGAAACGGCGGCTGGAAGATATCAGGCGC CGAGAAGATGAAGATGAGGCGCTGCAGAGAGCAAACAGCAAACGACGGCCACAGACAGGAGGAAGTTTCTACCCA CGAAGAAGGGCCAGTTCGTATAGTGAAACTGATCTCACTGAAACCGATCTGTCCCGTCCTCCACCTCGACACGCA TCACATGGAGAATCTCTTCTTACTGCAGAGCCACTCGCCTCTGGTGCTGTCCATAGCGTTGTATCAGATATGCCG CCTATGCCCCCGAGCCACCAGCAGTTCTCTGAAGATCCTCACTCACGTCACTCTCTCGCCCATGATGGAGCAGAA TTTGCATCAGGTGCGGCTGCTGGGGCAGCACTAGATGCAGCCGCCCGCCGTAATCGGAGCAGCAGCCGGCGCCGA GAGGACGACGTTGCCTCCCCGCCGGTATCTGTGAAAGTGAAAATGCACAATGACGGACGACATGTGACACTCCGT CGGCTGACCGAAGAAGAAGCGGCCGCGAGCCGTGAGGCCCGTCGCAGAGAGCGAAGAAGCTCTCGACGTCGCAAC AGCAGTGCAGGCTCCTTGTCTGGCAACGAAGACGCCGGCCACGACCGCTGGCGTCGCGTTGAAGAACTCGAACGT CAACAAGACGAGCAGATGCGACGTGAACAGGCTGCTGCTGCTGCTCGCCTTGCCCCTCCACAGGCACCTTCAGGC AGCATGCCACCTCCCATTCCTGCGCCTTCCAGCAACCCATATGGGCCAGGCAGTGTCACTTCGCCTACATATACC GGTACTGAGATGAGCGGCTCTTACGCGAACAATCGTCGCCGCAGACGTGCTGAACGAGCCCGGACCCGACAAGAG AGGCAGCAGCAGCACGGTGTGGAATTCACGTGA |
| Transcript | >Pro_DTO377G3_2|g4328.t1 ATGTCAAACTCAGATCTCGCCGCTGCAGGGAGCAGCACATATTCATCCAATACCCTTCATGTTGGGGATGGCACC TGGGACTCTGGGCGGGATACCTTCCTACTGCCCAATTTGATGGGGGTCAACTTTGAGACGATGCGATACAATGGC ATGGGGAACCGTTTCAAGGATATGGCCGGGTACCATTCCATAATCATCGCGCACGGCGTCATTGCAACAATCGTT TTCTTGGGCATCGTCCCAATATCAACTTTCATAATCCGATATTACTCCCGATGGAATCCTTACTGGGCATTCAAA TTGCATGCTTGGTGCCAGGTACTTACCCTGCTCTTGACCACGGTTGTGTTTGTGCTTGGGTGGTTCGCCGTTGGG CCACAAAGAAGCCTAACCAACCCACATCATGGAATCGGCCTGGCAATCTATGTTTTGGTTATTTTTCAGGTGCTG TGGGGCTGGTTTGTGCACAAGAAAGAGAGTAAGAGACGGCGAGTTCACGTTCCTTTGAAACTGGTGGTTCACCGG TGGCTGGGTCGTGCACTTCTACTTCTCGGAATTGCTCAAATTCCACTAGGACTCACGCTCTACGGTTCGCCAAAG GTCCTATTCATCCTATTCGCGCTGACAGCTTTCGGCTACTTGGTTCTTTACTTTTTACTTTCCTACCGATATGAC TTTGAAGGATACCACATGGGAAGTGACCACGGTGATGACCGCAGTCATTATACAGGACCTTCAGAGATATCAGAG CACCATGGCAATCATGCGGCAGAAGCTCTCGCCGCCGGCGCTGCGGGTGCTGGCCTAGCTTCAATGTTTCGACGG CGTTCAAGCAGTCGCCACCCAAGCCATGCTTATGAAGACTCTCGCACATCTATCTCTGATGAAAAATATTCAGAT GAAGCTTCCCGTCATCATGGTGGTGGTGGTTTCGGCAAGAAACTCCTCGAGCTTGGTGCACTGGCTGGGGCTGGT CTCATGGCCAAGAATTTCTGGAATCGTCGAAAAAAGCGAGAAGATGATGCCGAATCGGGTCGTTACAGACCCGCC CATTCGCGCAGTACTAGCCACACGGATGAATCTCTCAGCAGGATAGAAGATGGTCGACCGGAGCCGACACACCAC ACGCCCCTTAATCGACCACCGAGCCGTGTACCAAGCAGGTCCCAAAGCCCGGGGTCGTCTTACTATTACAACAGC ACATATCTCACTGAGCCTCCTAAGCGAAACGCTTCTCATGGGGTTAGAGACGCTGTTCTGGGTGCAGGTGCTTTT GCTGCCGTGAAGCGACTGTTTAGCCGCGGTAAAAAGGACGATGAAGAGAAACGGCGGCTGGAAGATATCAGGCGC CGAGAAGATGAAGATGAGGCGCTGCAGAGAGCAAACAGCAAACGACGGCCACAGACAGGAGGAAGTTTCTACCCA CGAAGAAGGGCCAGTTCGTATAGTGAAACTGATCTCACTGAAACCGATCTGTCCCGTCCTCCACCTCGACACGCA TCACATGGAGAATCTCTTCTTACTGCAGAGCCACTCGCCTCTGGTGCTGTCCATAGCGTTGTATCAGATATGCCG CCTATGCCCCCGAGCCACCAGCAGTTCTCTGAAGATCCTCACTCACGTCACTCTCTCGCCCATGATGGAGCAGAA TTTGCATCAGGTGCGGCTGCTGGGGCAGCACTAGATGCAGCCGCCCGCCGTAATCGGAGCAGCAGCCGGCGCCGA GAGGACGACGTTGCCTCCCCGCCGGTATCTGTGAAAGTGAAAATGCACAATGACGGACGACATGTGACACTCCGT CGGCTGACCGAAGAAGAAGCGGCCGCGAGCCGTGAGGCCCGTCGCAGAGAGCGAAGAAGCTCTCGACGTCGCAAC AGCAGTGCAGGCTCCTTGTCTGGCAACGAAGACGCCGGCCACGACCGCTGGCGTCGCGTTGAAGAACTCGAACGT CAACAAGACGAGCAGATGCGACGTGAACAGGCTGCTGCTGCTGCTCGCCTTGCCCCTCCACAGGCACCTTCAGGC AGCATGCCACCTCCCATTCCTGCGCCTTCCAGCAACCCATATGGGCCAGGCAGTGTCACTTCGCCTACATATACC GGTACTGAGATGAGCGGCTCTTACGCGAACAATCGTCGCCGCAGACGTGCTGAACGAGCCCGGACCCGACAAGAG AGGCAGCAGCAGCACGGTGTGGAATTCACGTGA |
| Gene | >Pro_DTO377G3_2|g4328.t1 ATGTCAAACTCAGATCTCGCCGCTGCAGGGAGCAGCACATATTCATCCAATACCCTTCATGTTGGGGATGGCACC TGGGACTCTGGGCGGGATACCTTCCTACTGCCCAATTTGATGGGGGTCAACTTTGAGACGATGCGATACAATGGT TAGTCGGACGCATCAACAATCGGCTTTCATAATGGTGTACACCCTTTCAATTATCTTGTAATGACTGACACTTTA CAGGCATGGGGAACCGTTTCAAGGATATGGCCGGGTACCATTCCATAATCATCGCGCACGGCGTCATTGCAACAA TCGTTTTCTTGGGCATCGTCCCAATATCAACTTTCATAATCCGATATTACTCCCGATGGAATCCTTACTGGGCAT TCAAATTGCATGCTTGGTGCCAGGTACTTACCCTGCTCTTGACCACGGTTGTGTTTGTGCTTGGGTGGTTCGCCG TTGGGCCACAAAGAAGCCTAACCAACCCACATCATGGAATCGGCCTGGCAATCTATGTTTTGGTTATTTTTCAGG TGCTGTGGGGCTGGTTTGTGCACAAGAAAGAGAGTAAGAGACGGCGAGTTCACGTTCCTTTGAAACTGGTGGTAA GTGAAGTCTCAAGAAGGGATATAAGGGCTCTTCTAACATGTCTTAGGTTCACCGGTGGCTGGGTCGTGCACTTCT ACTTCTCGGAATTGCTCAAATTCCACTAGGACTCACGCTCTACGGTTCGCCAAAGGTCCTATTCATCCTATTCGC GCTGACAGCTTTCGGCTACTTGGTTCTTTACTTTTTACTTTCCTACCGATATGACTTTGAAGGATACCACATGGG AAGTGACCACGGTGATGACCGCAGTCATTATACAGGACCTTCAGAGATATCAGAGCACCATGGCAATCATGCGGC AGAAGCTCTCGCCGCCGGCGCTGCGGGTGCTGGCCTAGCTTCAATGTTTCGACGGCGTTCAAGCAGTCGCCACCC AAGCCATGCTTATGAAGACTCTCGCACATCTATCTCTGATGAAAAATATTCAGATGAAGCTTCCCGTCATCATGG TGGTGGTGGTTTCGGCAAGAAACTCCTCGAGCTTGGTGCACTGGCTGGGGCTGGTCTCATGGCCAAGAATTTCTG GAATCGTCGAAAAAAGCGAGAAGATGATGCCGAATCGGGTCGTTACAGACCCGCCCATTCGCGCAGTACTAGCCA CACGGATGAATCTCTCAGCAGGATAGAAGATGGTCGACCGGAGCCGACACACCACACGCCCCTTAATCGACCACC GAGCCGTGTACCAAGCAGGTCCCAAAGCCCGGGGTCGTCTTACTATTACAACAGCACATATCTCACTGAGCCTCC TAAGCGAAACGCTTCTCATGGGGTTAGAGACGCTGTTCTGGGTGCAGGTGCTTTTGCTGCCGTGAAGCGACTGTT TAGCCGCGGTAAAAAGGACGATGAAGAGAAACGGCGGCTGGAAGATATCAGGCGCCGAGAAGATGAAGATGAGGC GCTGCAGAGAGCAAACAGCAAACGACGGCCACAGACAGGAGGAAGTTTCTACCCACGAAGAAGGGCCAGTTCGTA TAGTGAAACTGATCTCACTGAAACCGATCTGTCCCGTCCTCCACCTCGACACGCATCACATGGAGAATCTCTTCT TACTGCAGAGCCACTCGCCTCTGGTGCTGTCCATAGCGTTGTATCAGATATGCCGCCTATGCCCCCGAGCCACCA GCAGTTCTCTGAAGATCCTCACTCACGTCACTCTCTCGCCCATGATGGAGCAGAATTTGCATCAGGTGCGGCTGC TGGGGCAGCACTAGATGCAGCCGCCCGCCGTAATCGGAGCAGCAGCCGGCGCCGAGAGGACGACGTTGCCTCCCC GCCGGTATCTGTGAAAGTGAAAATGCACAATGACGGACGACATGTGACACTCCGTCGGCTGACCGAAGAAGAAGC GGCCGCGAGCCGTGAGGCCCGTCGCAGAGAGCGAAGAAGCTCTCGACGTCGCAACAGCAGTGCAGGCTCCTTGTC TGGCAACGAAGACGCCGGCCACGACCGCTGGCGTCGCGTTGAAGAACTCGAACGTCAACAAGACGAGCAGATGCG ACGTGAACAGGCTGCTGCTGCTGCTCGCCTTGCCCCTCCACAGGCACCTTCAGGCAGCATGCCACCTCCCATTCC TGCGCCTTCCAGCAACCCATATGGGCCAGGCAGTGTCACTTCGCCTACATATACCGGTACTGAGATGAGCGGCTC TTACGCGAACAATCGTCGCCGCAGACGTGCTGAACGAGCCCGGACCCGACAAGAGAGGCAGCAGCAGCACGGTGT GGAATTCACGTGA |