Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g43.t1
Gene name
Location	scaffold_01:102880..104602
Strand	-
Gene length (bp)	1722
Transcript length (bp)	1665
Coding sequence length (bp)	1665
Protein length (aa)	555

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00144	Beta-lactamase	Beta-lactamase	1.4E-51	9	347
PF11954	DUF3471	Domain of unknown function (DUF3471)	7.1E-17	430	532

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 39	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	0.23	0.00	0.57
5d_25C	Five days - 25 degrees Celsius	0.82	0.00	1.64
7d_25C	Seven days - 25 degrees Celsius	0.56	0.00	1.14
10d_25C	Ten days - 25 degrees Celsius	1.79	0.35	3.24
7d_15C	Seven days - 15 degrees Celsius	0.65	0.00	1.30
7d_30C	Seven days - 30 degrees Celsius	1.82	0.34	3.29

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.106051	no
3d_25C	7d_25C	1.000000	no
3d_25C	7d_15C	1.000000	no
3d_25C	7d_30C	0.017204	yes
3d_25C	10d_25C	0.018034	yes
5d_25C	7d_25C	0.578654	no
5d_25C	7d_15C	0.754441	no
5d_25C	7d_30C	0.128640	no
5d_25C	10d_25C	0.138010	no
7d_25C	7d_15C	1.000000	no
7d_25C	7d_30C	0.024170	yes
7d_25C	10d_25C	0.027278	yes
7d_15C	7d_30C	0.044390	yes
7d_15C	10d_25C	0.047513	yes
7d_30C	10d_25C	0.986174	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g43.t1 MDLLHSAGFASHVTELIDQQHVPGLAIAIIHNDQIASAGYGHASLDPEIPCTADTLFDIASSAKSLTAAAVGLLV ADNDMFPDIQYDAVMSTLLPEDFVMSGKGYTEGVSVEDILSHRSGMPSHNDSYMSVRAAKPDNARSITRNLRNLP VAAPIRSKYIYCNMMYTVATHLVEVKSGQNFGTFLEERFFKPLDMASTTLQPSSARSKGFESRMATGYTWKRADS TYRGLENPDCPEGQGAGSVISSVNDFIKFVKAFMNREDPINKNVYEGLTRLRTFVNPNPGRRKRHTSPVAYAAGL DIYFYRGHMVVGHNGVFSGFGSRFFFLPDFSFGAVIMGNSDGANGVAATLVRKLIDNLLGVMDERPHDSKSKATR PVKIRGPKPQAEVKDANPMSKNQGKKEKKKQEKKTQVKKSQDIQKGQVNEQRPKRHTPQPPTMPLSAYAGNYWNP GYHNLLVQIRDDALFIDATDRSMGFTLKFEHVSDDRKFDAHLTDWLDGSDGIVKAEFVIEDAQVTRLGLQLEEML KEMIWFEQKDGVKSEYLELRLTRNNNLDL*
Coding	>Pro_DTO377G3_2\|g43.t1 ATGGATCTTTTGCACTCGGCAGGGTTTGCGTCACATGTGACAGAGTTGATAGATCAGCAGCATGTCCCGGGGCTG GCGATTGCAATCATACACAATGATCAAATTGCCTCTGCGGGATATGGACATGCGAGCCTGGATCCAGAAATACCT TGCACAGCAGATACGCTGTTTGACATTGCATCGTCTGCTAAATCACTCACTGCTGCGGCGGTGGGATTGCTAGTC GCCGATAATGACATGTTCCCGGATATTCAGTACGATGCTGTAATGTCGACTCTTCTCCCCGAGGACTTTGTTATG TCTGGAAAAGGATACACAGAAGGAGTCAGCGTGGAAGACATCTTAAGTCATAGAAGTGGAATGCCTAGCCATAAC GATTCTTATATGAGTGTGCGAGCGGCGAAGCCAGACAATGCTCGATCCATTACGAGAAACCTCAGGAATCTCCCT GTCGCTGCTCCCATTCGATCAAAGTATATTTACTGCAACATGATGTATACAGTGGCAACCCATCTTGTGGAAGTC AAGAGCGGACAGAATTTTGGTACATTCCTCGAAGAGCGATTTTTCAAGCCTCTGGACATGGCATCAACTACTCTT CAACCCAGCAGCGCACGATCAAAAGGATTCGAATCCCGCATGGCAACTGGCTACACATGGAAAAGAGCCGACTCA ACATATCGTGGGTTAGAAAATCCGGACTGCCCAGAAGGCCAAGGCGCAGGGTCTGTCATTTCGAGCGTGAACGAC TTCATCAAATTTGTCAAGGCTTTTATGAATCGCGAAGACCCTATCAATAAAAATGTTTATGAAGGACTCACTCGC CTGCGAACTTTTGTGAATCCAAACCCAGGAAGACGGAAGCGGCACACCTCACCGGTAGCATATGCTGCTGGTCTG GATATCTACTTTTACAGGGGACATATGGTCGTCGGCCATAATGGGGTATTCTCTGGATTCGGAAGTCGCTTCTTC TTTCTCCCTGATTTCTCATTCGGTGCTGTGATCATGGGAAACTCAGATGGGGCAAATGGCGTTGCGGCGACCCTT GTCCGAAAGCTAATTGACAATCTCCTTGGAGTCATGGACGAAAGACCTCATGACAGCAAAAGCAAAGCCACAAGA CCTGTTAAAATTCGCGGTCCAAAACCCCAGGCCGAGGTGAAAGATGCAAATCCAATGAGTAAGAACCAGGGAAAG AAGGAGAAGAAAAAGCAGGAAAAGAAAACCCAAGTGAAAAAAAGTCAAGATATCCAGAAGGGCCAAGTGAATGAA CAAAGACCAAAAAGGCATACTCCGCAGCCACCGACAATGCCTCTCAGTGCTTACGCTGGCAACTACTGGAATCCT GGGTATCATAACTTATTGGTCCAAATCAGAGATGATGCGCTCTTCATCGATGCTACAGATCGCTCAATGGGGTTT ACCTTGAAATTCGAGCATGTGTCCGATGACCGAAAATTCGATGCTCATCTTACTGATTGGCTCGATGGCAGTGAT GGCATCGTAAAAGCGGAGTTTGTAATAGAAGATGCTCAAGTCACAAGGTTGGGTCTGCAGTTGGAGGAAATGCTC AAGGAAATGATCTGGTTCGAGCAGAAGGATGGAGTAAAGAGTGAGTATCTTGAATTGAGGCTGACAAGGAATAAT AATTTGGATTTATAA
Transcript	>Pro_DTO377G3_2\|g43.t1 ATGGATCTTTTGCACTCGGCAGGGTTTGCGTCACATGTGACAGAGTTGATAGATCAGCAGCATGTCCCGGGGCTG GCGATTGCAATCATACACAATGATCAAATTGCCTCTGCGGGATATGGACATGCGAGCCTGGATCCAGAAATACCT TGCACAGCAGATACGCTGTTTGACATTGCATCGTCTGCTAAATCACTCACTGCTGCGGCGGTGGGATTGCTAGTC GCCGATAATGACATGTTCCCGGATATTCAGTACGATGCTGTAATGTCGACTCTTCTCCCCGAGGACTTTGTTATG TCTGGAAAAGGATACACAGAAGGAGTCAGCGTGGAAGACATCTTAAGTCATAGAAGTGGAATGCCTAGCCATAAC GATTCTTATATGAGTGTGCGAGCGGCGAAGCCAGACAATGCTCGATCCATTACGAGAAACCTCAGGAATCTCCCT GTCGCTGCTCCCATTCGATCAAAGTATATTTACTGCAACATGATGTATACAGTGGCAACCCATCTTGTGGAAGTC AAGAGCGGACAGAATTTTGGTACATTCCTCGAAGAGCGATTTTTCAAGCCTCTGGACATGGCATCAACTACTCTT CAACCCAGCAGCGCACGATCAAAAGGATTCGAATCCCGCATGGCAACTGGCTACACATGGAAAAGAGCCGACTCA ACATATCGTGGGTTAGAAAATCCGGACTGCCCAGAAGGCCAAGGCGCAGGGTCTGTCATTTCGAGCGTGAACGAC TTCATCAAATTTGTCAAGGCTTTTATGAATCGCGAAGACCCTATCAATAAAAATGTTTATGAAGGACTCACTCGC CTGCGAACTTTTGTGAATCCAAACCCAGGAAGACGGAAGCGGCACACCTCACCGGTAGCATATGCTGCTGGTCTG GATATCTACTTTTACAGGGGACATATGGTCGTCGGCCATAATGGGGTATTCTCTGGATTCGGAAGTCGCTTCTTC TTTCTCCCTGATTTCTCATTCGGTGCTGTGATCATGGGAAACTCAGATGGGGCAAATGGCGTTGCGGCGACCCTT GTCCGAAAGCTAATTGACAATCTCCTTGGAGTCATGGACGAAAGACCTCATGACAGCAAAAGCAAAGCCACAAGA CCTGTTAAAATTCGCGGTCCAAAACCCCAGGCCGAGGTGAAAGATGCAAATCCAATGAGTAAGAACCAGGGAAAG AAGGAGAAGAAAAAGCAGGAAAAGAAAACCCAAGTGAAAAAAAGTCAAGATATCCAGAAGGGCCAAGTGAATGAA CAAAGACCAAAAAGGCATACTCCGCAGCCACCGACAATGCCTCTCAGTGCTTACGCTGGCAACTACTGGAATCCT GGGTATCATAACTTATTGGTCCAAATCAGAGATGATGCGCTCTTCATCGATGCTACAGATCGCTCAATGGGGTTT ACCTTGAAATTCGAGCATGTGTCCGATGACCGAAAATTCGATGCTCATCTTACTGATTGGCTCGATGGCAGTGAT GGCATCGTAAAAGCGGAGTTTGTAATAGAAGATGCTCAAGTCACAAGGTTGGGTCTGCAGTTGGAGGAAATGCTC AAGGAAATGATCTGGTTCGAGCAGAAGGATGGAGTAAAGAGTGAGTATCTTGAATTGAGGCTGACAAGGAATAAT AATTTGGATTTATAA
Gene	>Pro_DTO377G3_2\|g43.t1 ATGGATCTTTTGCACTCGGCAGGGTTTGCGTCACATGTGACAGAGTTGATAGATCAGCAGCATGTCCCGGGGCTG GCGATTGCAATCATACACAATGATCAAATTGCCTCTGCGGGATATGGACATGCGAGCCTGGATCCAGAAATACCT TGCACAGCAGATACGCTGTTTGACATTGCATCGTCTGCTAAATCACTCACTGCTGCGGCGGTGGGATTGCTAGTC GCCGATAATGACATGTTCCCGGATATTCAGTACGATGCTGTAATGTCGACTCTTCTCCCCGAGGACTTTGTTATG TCTGGAAAAGGATACACAGAAGGAGTCAGCGTGGAAGACATCTTAAGTCATAGAAGTGGAATGCCTAGGTGAGCT AGTTTTTTCAAATTTCATGGTTGAGTTCAAGACTAATGATATTGCGCCAGCCATAACGATTCTTATATGAGTGTG CGAGCGGCGAAGCCAGACAATGCTCGATCCATTACGAGAAACCTCAGGAATCTCCCTGTCGCTGCTCCCATTCGA TCAAAGTATATTTACTGCAACATGATGTATACAGTGGCAACCCATCTTGTGGAAGTCAAGAGCGGACAGAATTTT GGTACATTCCTCGAAGAGCGATTTTTCAAGCCTCTGGACATGGCATCAACTACTCTTCAACCCAGCAGCGCACGA TCAAAAGGATTCGAATCCCGCATGGCAACTGGCTACACATGGAAAAGAGCCGACTCAACATATCGTGGGTTAGAA AATCCGGACTGCCCAGAAGGCCAAGGCGCAGGGTCTGTCATTTCGAGCGTGAACGACTTCATCAAATTTGTCAAG GCTTTTATGAATCGCGAAGACCCTATCAATAAAAATGTTTATGAAGGACTCACTCGCCTGCGAACTTTTGTGAAT CCAAACCCAGGAAGACGGAAGCGGCACACCTCACCGGTAGCATATGCTGCTGGTCTGGATATCTACTTTTACAGG GGACATATGGTCGTCGGCCATAATGGGGTATTCTCTGGATTCGGAAGTCGCTTCTTCTTTCTCCCTGATTTCTCA TTCGGTGCTGTGATCATGGGAAACTCAGATGGGGCAAATGGCGTTGCGGCGACCCTTGTCCGAAAGCTAATTGAC AATCTCCTTGGAGTCATGGACGAAAGACCTCATGACAGCAAAAGCAAAGCCACAAGACCTGTTAAAATTCGCGGT CCAAAACCCCAGGCCGAGGTGAAAGATGCAAATCCAATGAGTAAGAACCAGGGAAAGAAGGAGAAGAAAAAGCAG GAAAAGAAAACCCAAGTGAAAAAAAGTCAAGATATCCAGAAGGGCCAAGTGAATGAACAAAGACCAAAAAGGCAT ACTCCGCAGCCACCGACAATGCCTCTCAGTGCTTACGCTGGCAACTACTGGAATCCTGGGTATCATAACTTATTG GTCCAAATCAGAGATGATGCGCTCTTCATCGATGCTACAGATCGCTCAATGGGGTTTACCTTGAAATTCGAGCAT GTGTCCGATGACCGAAAATTCGATGCTCATCTTACTGATTGGCTCGATGGCAGTGATGGCATCGTAAAAGCGGAG TTTGTAATAGAAGATGCTCAAGTCACAAGGTTGGGTCTGCAGTTGGAGGAAATGCTCAAGGAAATGATCTGGTTC GAGCAGAAGGATGGAGTAAAGAGTGAGTATCTTGAATTGAGGCTGACAAGGAATAATAATTTGGATTTATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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