Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4271.t1
Gene name
Locationscaffold_08:542476..542995
Strand+
Gene length (bp)519
Transcript length (bp)519
Coding sequence length (bp)519
Protein length (aa) 173

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 5 24 19
2 45 67 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.77 0.0 2.00
5d_25C Five days - 25 degrees Celsius 0.21 0.0 0.65
7d_25C Seven days - 25 degrees Celsius 0.45 0.0 1.16
10d_25C Ten days - 25 degrees Celsius 0.18 0.0 0.61
7d_15C Seven days - 15 degrees Celsius 0.41 0.0 1.28
7d_30C Seven days - 30 degrees Celsius 0.47 0.0 1.23

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.414522 no
3d_25C 7d_25C 0.686961 no
3d_25C 7d_15C 0.645055 no
3d_25C 7d_30C 0.735684 no
3d_25C 10d_25C 0.376215 no
5d_25C 7d_25C 1.000000 no
5d_25C 7d_15C 1.000000 no
5d_25C 7d_30C 1.000000 no
5d_25C 10d_25C 1.000000 no
7d_25C 7d_15C 1.000000 no
7d_25C 7d_30C 1.000000 no
7d_25C 10d_25C 1.000000 no
7d_15C 7d_30C 1.000000 no
7d_15C 10d_25C 1.000000 no
7d_30C 10d_25C 1.000000 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4271.t1
MIYNWIQLAGFCIQDLVICGLYIYEAIRALKCIIQIRGRNGRKVIIHLLWVNILVIALNILLLLTEYKLHYIQVS
FKTVVYCIKLKLEFSVLNRLRSLVHSPALASPPDPMQQCRSSIDMNLFQAYFSRPIVALDMATPSSTGPVGVIRC
DSPSSSIPDYHGMLREISDGGD*
Coding >Pro_DTO377G3_2|g4271.t1
ATGATCTACAACTGGATCCAATTAGCAGGCTTCTGTATACAGGACCTTGTTATATGCGGCCTTTATATCTATGAG
GCGATCCGCGCTCTCAAGTGCATTATCCAAATTCGCGGTCGGAATGGCCGCAAGGTCATCATTCACCTTCTTTGG
GTCAATATTCTCGTTATTGCCCTCAATATTCTACTACTCCTCACGGAGTACAAGCTGCACTACATCCAAGTCAGC
TTCAAGACGGTGGTCTATTGCATCAAGTTGAAACTGGAGTTTTCTGTGCTCAACCGTCTCCGCTCACTGGTGCAT
TCTCCTGCCCTGGCTTCCCCGCCAGACCCAATGCAGCAGTGTCGGTCATCAATCGATATGAACCTCTTTCAAGCC
TACTTCTCCCGTCCAATTGTCGCACTGGACATGGCAACGCCATCTAGCACGGGTCCAGTGGGAGTCATCCGTTGT
GACTCGCCATCTAGCAGTATCCCGGATTATCACGGGATGCTACGCGAGATCTCAGATGGGGGAGATTGA
Transcript >Pro_DTO377G3_2|g4271.t1
ATGATCTACAACTGGATCCAATTAGCAGGCTTCTGTATACAGGACCTTGTTATATGCGGCCTTTATATCTATGAG
GCGATCCGCGCTCTCAAGTGCATTATCCAAATTCGCGGTCGGAATGGCCGCAAGGTCATCATTCACCTTCTTTGG
GTCAATATTCTCGTTATTGCCCTCAATATTCTACTACTCCTCACGGAGTACAAGCTGCACTACATCCAAGTCAGC
TTCAAGACGGTGGTCTATTGCATCAAGTTGAAACTGGAGTTTTCTGTGCTCAACCGTCTCCGCTCACTGGTGCAT
TCTCCTGCCCTGGCTTCCCCGCCAGACCCAATGCAGCAGTGTCGGTCATCAATCGATATGAACCTCTTTCAAGCC
TACTTCTCCCGTCCAATTGTCGCACTGGACATGGCAACGCCATCTAGCACGGGTCCAGTGGGAGTCATCCGTTGT
GACTCGCCATCTAGCAGTATCCCGGATTATCACGGGATGCTACGCGAGATCTCAGATGGGGGAGATTGA
Gene >Pro_DTO377G3_2|g4271.t1
ATGATCTACAACTGGATCCAATTAGCAGGCTTCTGTATACAGGACCTTGTTATATGCGGCCTTTATATCTATGAG
GCGATCCGCGCTCTCAAGTGCATTATCCAAATTCGCGGTCGGAATGGCCGCAAGGTCATCATTCACCTTCTTTGG
GTCAATATTCTCGTTATTGCCCTCAATATTCTACTACTCCTCACGGAGTACAAGCTGCACTACATCCAAGTCAGC
TTCAAGACGGTGGTCTATTGCATCAAGTTGAAACTGGAGTTTTCTGTGCTCAACCGTCTCCGCTCACTGGTGCAT
TCTCCTGCCCTGGCTTCCCCGCCAGACCCAATGCAGCAGTGTCGGTCATCAATCGATATGAACCTCTTTCAAGCC
TACTTCTCCCGTCCAATTGTCGCACTGGACATGGCAACGCCATCTAGCACGGGTCCAGTGGGAGTCATCCGTTGT
GACTCGCCATCTAGCAGTATCCCGGATTATCACGGGATGCTACGCGAGATCTCAGATGGGGGAGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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