© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4270.t1 |
| Gene name | |
| Location | scaffold_08:536968..538571 |
| Strand | + |
| Gene length (bp) | 1603 |
| Transcript length (bp) | 1491 |
| Coding sequence length (bp) | 1491 |
| Protein length (aa) | 497 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 6.1E-37 | 69 | 435 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 95 | 117 | 22 |
| 2 | 132 | 151 | 19 |
| 3 | 158 | 180 | 22 |
| 4 | 193 | 215 | 22 |
| 5 | 227 | 249 | 22 |
| 6 | 330 | 352 | 22 |
| 7 | 359 | 381 | 22 |
| 8 | 391 | 413 | 22 |
| 9 | 420 | 442 | 22 |
| 10 | 452 | 474 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.54 | 1.42 | 7.66 |
| 5d_25C | Five days - 25 degrees Celsius | 2.76 | 0.68 | 4.83 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.28 | 1.34 | 7.22 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.52 | 1.89 | 9.15 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.13 | 1.23 | 7.03 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.19 | 0.83 | 5.56 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.226560 | no |
| 3d_25C | 7d_25C | 0.919128 | no |
| 3d_25C | 7d_15C | 0.865361 | no |
| 3d_25C | 7d_30C | 0.437705 | no |
| 3d_25C | 10d_25C | 0.681121 | no |
| 5d_25C | 7d_25C | 0.296401 | no |
| 5d_25C | 7d_15C | 0.340892 | no |
| 5d_25C | 7d_30C | 0.793324 | no |
| 5d_25C | 10d_25C | 0.063332 | no |
| 7d_25C | 7d_15C | 0.953631 | no |
| 7d_25C | 7d_30C | 0.531972 | no |
| 7d_25C | 10d_25C | 0.565616 | no |
| 7d_15C | 7d_30C | 0.591136 | no |
| 7d_15C | 10d_25C | 0.496532 | no |
| 7d_30C | 10d_25C | 0.156474 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4270.t1 MATSEKTMERASSQAFDHEKCKNTHCEDVCSVRVGNEKAQGDYSGATAKVDPVEIRLVRKLDFRIMPILWAMYFL NYVDRNAIANARLNDLEDDLGLVGTQYNTCISILFVGYLLMQIPSNMLMSSRKFRPSLYMSVCMALWAIVSACTA LTKNYIGLLLVRFFLGVTEAPFYPGALFLLSVFYTRKEIALRISILYTGNIVATAVAGLIAAAVFETLDQRMNLK GWRWLFIIEGVVTFGVAGLGIFMLPDHPLTTRWLTPEERELAQARIERDTVNSVDSQGVLAGLKQALADPRLYLL AFMQNMHLSACGFNNFFPTVVGSLGFSSTITLVLTCPPYLFSGICCIVVGITSGRYNERTWHITLSMGVAVIGFV ISCVTLNKGARYVACFLFASGAYAVNSVILGWASATLGQTPEKKAASIGFINVVANASYIYTAYLYPKSDGPQYL VGMSANTAFGIASIGSAWALKWWLQSTNKKIVQGTLPGAGDVLYAY* |
| Coding | >Pro_DTO377G3_2|g4270.t1 ATGGCAACGTCAGAAAAGACTATGGAGAGAGCTTCAAGCCAAGCCTTTGATCACGAAAAGTGCAAGAACACTCAT TGTGAAGACGTATGCTCTGTCAGAGTAGGCAACGAGAAAGCCCAGGGCGATTATTCCGGTGCCACTGCCAAGGTC GACCCCGTGGAAATCAGACTTGTGCGCAAGTTGGACTTCAGAATCATGCCCATATTATGGGCAATGTACTTTCTG AACTATGTCGATCGCAATGCTATCGCTAATGCACGTCTCAACGACCTCGAAGATGACCTTGGCCTTGTCGGAACA CAGTACAATACCTGCATCTCGATTTTGTTTGTTGGCTATCTTCTGATGCAAATCCCCTCGAACATGCTCATGTCC TCGAGGAAGTTCCGGCCATCGCTATACATGAGTGTATGTATGGCGTTATGGGCTATAGTCTCTGCTTGCACGGCT TTGACGAAAAATTACATTGGCCTTCTTCTCGTCCGATTCTTTCTGGGGGTCACTGAGGCTCCCTTCTACCCGGGC GCATTATTCCTTCTTTCGGTTTTTTACACGCGCAAGGAAATTGCTCTCCGCATTTCCATACTATATACTGGCAAT ATCGTCGCCACTGCCGTTGCTGGACTAATTGCTGCTGCAGTCTTTGAAACCTTGGACCAGCGCATGAATCTCAAA GGATGGCGCTGGCTCTTTATCATTGAAGGTGTTGTTACATTTGGGGTTGCCGGCCTCGGCATTTTCATGCTACCA GATCACCCACTCACAACGCGTTGGCTGACCCCTGAAGAGCGTGAGCTTGCACAGGCTCGCATTGAAAGGGATACA GTCAATAGTGTAGACTCTCAGGGTGTTTTAGCTGGTTTAAAGCAAGCCCTGGCCGACCCTCGCCTTTACCTCCTG GCATTCATGCAGAACATGCATCTTAGTGCCTGTGGTTTCAACAACTTCTTCCCAACTGTTGTTGGAAGCCTCGGG TTTAGTAGCACAATCACCTTGGTGCTGACATGCCCTCCATATCTGTTCTCCGGAATATGCTGTATTGTTGTTGGT ATCACCTCTGGTCGATATAATGAGCGAACATGGCACATCACCCTATCAATGGGCGTTGCTGTTATAGGGTTTGTT ATATCCTGTGTGACACTCAACAAAGGAGCAAGATATGTCGCCTGCTTCCTCTTCGCCAGTGGTGCATACGCCGTC AATTCTGTCATTTTGGGCTGGGCGTCTGCTACGCTTGGCCAGACGCCAGAAAAAAAAGCCGCGTCGATCGGTTTT ATCAATGTCGTTGCCAATGCCTCATATATCTATACTGCCTACCTCTATCCAAAGTCCGATGGCCCTCAATACCTG GTTGGAATGTCGGCAAACACAGCTTTCGGAATTGCAAGTATTGGAAGTGCTTGGGCATTGAAGTGGTGGTTGCAG AGTACAAACAAGAAGATCGTCCAGGGTACTCTGCCTGGCGCTGGTGATGTTCTTTATGCCTACTGA |
| Transcript | >Pro_DTO377G3_2|g4270.t1 ATGGCAACGTCAGAAAAGACTATGGAGAGAGCTTCAAGCCAAGCCTTTGATCACGAAAAGTGCAAGAACACTCAT TGTGAAGACGTATGCTCTGTCAGAGTAGGCAACGAGAAAGCCCAGGGCGATTATTCCGGTGCCACTGCCAAGGTC GACCCCGTGGAAATCAGACTTGTGCGCAAGTTGGACTTCAGAATCATGCCCATATTATGGGCAATGTACTTTCTG AACTATGTCGATCGCAATGCTATCGCTAATGCACGTCTCAACGACCTCGAAGATGACCTTGGCCTTGTCGGAACA CAGTACAATACCTGCATCTCGATTTTGTTTGTTGGCTATCTTCTGATGCAAATCCCCTCGAACATGCTCATGTCC TCGAGGAAGTTCCGGCCATCGCTATACATGAGTGTATGTATGGCGTTATGGGCTATAGTCTCTGCTTGCACGGCT TTGACGAAAAATTACATTGGCCTTCTTCTCGTCCGATTCTTTCTGGGGGTCACTGAGGCTCCCTTCTACCCGGGC GCATTATTCCTTCTTTCGGTTTTTTACACGCGCAAGGAAATTGCTCTCCGCATTTCCATACTATATACTGGCAAT ATCGTCGCCACTGCCGTTGCTGGACTAATTGCTGCTGCAGTCTTTGAAACCTTGGACCAGCGCATGAATCTCAAA GGATGGCGCTGGCTCTTTATCATTGAAGGTGTTGTTACATTTGGGGTTGCCGGCCTCGGCATTTTCATGCTACCA GATCACCCACTCACAACGCGTTGGCTGACCCCTGAAGAGCGTGAGCTTGCACAGGCTCGCATTGAAAGGGATACA GTCAATAGTGTAGACTCTCAGGGTGTTTTAGCTGGTTTAAAGCAAGCCCTGGCCGACCCTCGCCTTTACCTCCTG GCATTCATGCAGAACATGCATCTTAGTGCCTGTGGTTTCAACAACTTCTTCCCAACTGTTGTTGGAAGCCTCGGG TTTAGTAGCACAATCACCTTGGTGCTGACATGCCCTCCATATCTGTTCTCCGGAATATGCTGTATTGTTGTTGGT ATCACCTCTGGTCGATATAATGAGCGAACATGGCACATCACCCTATCAATGGGCGTTGCTGTTATAGGGTTTGTT ATATCCTGTGTGACACTCAACAAAGGAGCAAGATATGTCGCCTGCTTCCTCTTCGCCAGTGGTGCATACGCCGTC AATTCTGTCATTTTGGGCTGGGCGTCTGCTACGCTTGGCCAGACGCCAGAAAAAAAAGCCGCGTCGATCGGTTTT ATCAATGTCGTTGCCAATGCCTCATATATCTATACTGCCTACCTCTATCCAAAGTCCGATGGCCCTCAATACCTG GTTGGAATGTCGGCAAACACAGCTTTCGGAATTGCAAGTATTGGAAGTGCTTGGGCATTGAAGTGGTGGTTGCAG AGTACAAACAAGAAGATCGTCCAGGGTACTCTGCCTGGCGCTGGTGATGTTCTTTATGCCTACTGA |
| Gene | >Pro_DTO377G3_2|g4270.t1 ATGGCAACGTCAGAAAAGACTATGGAGAGAGCTTCAAGCCAAGCCTTTGATCACGAAAAGTGCAAGAACACTCAT TGTGAAGACGTATGCTCTGTCAGAGTAGGCAACGAGAAAGCCCAGGGCGATTATTCCGGTGCCACTGCCAAGGTC GACCCCGTGGAAATCAGACTTGTGCGCAAGTTGGACTTCAGAATCATGCCCATATTATGGGCAATGTACTTTCTG AACTATGTGAGCTTCTACATCTTATTCTACAAGCTGACAAGTCTTAACACAAATTAAATCAAGGTCGATCGCAAT GCTATCGCTAATGCACGTCTCAACGACCTCGAAGATGACCTTGGCCTTGTCGGAACACAGTACAATACCTGCATC TCGATTTTGTTTGTTGGGTATGTTTATCAATTGACTACGGATCAGACAGACCTGATCTGACTTGGGAACTAGCTA TCTTCTGATGCAAATCCCCTCGAACATGCTCATGTCCTCGAGGAAGTTCCGGCCATCGCTATACATGAGTGTATG TATGGCGTTATGGGCTATAGTCTCTGCTTGCACGGCTTTGACGAAAAATTACATTGGCCTTCTTCTCGTCCGATT CTTTCTGGGGGTCACTGAGGCTCCCTTCTACCCGGGCGCATTATTCCTTCTTTCGGTTTTTTACACGCGCAAGGA AATTGCTCTCCGCATTTCCATACTATATACTGGCAATATCGTCGCCACTGCCGTTGCTGGACTAATTGCTGCTGC AGTCTTTGAAACCTTGGACCAGCGCATGAATCTCAAAGGATGGCGCTGGCTCTTTATCATTGAAGGTGTTGTTAC ATTTGGGGTTGCCGGCCTCGGCATTTTCATGCTACCAGATCACCCACTCACAACGCGTTGGCTGACCCCTGAAGA GCGTGAGCTTGCACAGGCTCGCATTGAAAGGGATACAGTCAATAGTGTAGACTCTCAGGGTGTTTTAGCTGGTTT AAAGCAAGCCCTGGCCGACCCTCGCCTTTACCTCCTGGCATTCATGCAGAACATGCATCTTAGTGCCTGTGGTTT CAACAACTTCTTCCCAACTGTTGTTGGAAGCCTCGGGTTTAGTAGCACAATCACCTTGGTGCTGACATGCCCTCC ATATCTGTTCTCCGGAATATGCTGTATTGTTGTTGGTATCACCTCTGGTCGATATAATGAGCGAACATGGCACAT CACCCTATCAATGGGCGTTGCTGTTATAGGGTTTGTTATATCCTGTGTGACACTCAACAAAGGAGCAAGATATGT CGCCTGCTTCCTCTTCGCCAGTGGTGCATACGCCGTCAATTCTGTCATTTTGGGCTGGGCGTCTGCTACGCTTGG CCAGACGCCAGAAAAAAAAGCCGCGTCGATCGGTTTTATCAATGTCGTTGCCAATGCCTCATATATCTATACTGC CTACCTCTATCCAAAGTCCGATGGCCCTCAATACCTGGTTGGAATGTCGGCAAACACAGCTTTCGGAATTGCAAG TATTGGAAGTGCTTGGGCATTGAAGTGGTGGTTGCAGAGTACAAACAAGAAGATCGTCCAGGGTACTCTGCCTGG CGCTGGTGATGTTCTTTATGCCTACTGA |