© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4245.t1 |
| Gene name | |
| Location | scaffold_08:454315..456251 |
| Strand | - |
| Gene length (bp) | 1936 |
| Transcript length (bp) | 1716 |
| Coding sequence length (bp) | 1716 |
| Protein length (aa) | 572 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 1.5E-128 | 49 | 519 |
| PF13520 | AA_permease_2 | Amino acid permease | 1.2E-35 | 50 | 476 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 50 | 72 | 22 |
| 2 | 79 | 101 | 22 |
| 3 | 131 | 153 | 22 |
| 4 | 160 | 179 | 19 |
| 5 | 194 | 213 | 19 |
| 6 | 281 | 303 | 22 |
| 7 | 333 | 355 | 22 |
| 8 | 386 | 408 | 22 |
| 9 | 418 | 440 | 22 |
| 10 | 461 | 483 | 22 |
| 11 | 498 | 520 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.97 | 0.08 | 1.85 |
| 5d_25C | Five days - 25 degrees Celsius | 1.60 | 0.22 | 2.98 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.36 | 0.47 | 4.25 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.24 | 0.13 | 4.34 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.00 | 1.43 | 10.56 |
| 7d_30C | Seven days - 30 degrees Celsius | 6.19 | 2.11 | 10.26 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.375592 | no |
| 3d_25C | 7d_25C | 0.053871 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.112289 | no |
| 5d_25C | 7d_25C | 0.465917 | no |
| 5d_25C | 7d_15C | 0.001804 | yes |
| 5d_25C | 7d_30C | 0.001804 | yes |
| 5d_25C | 10d_25C | 0.601298 | no |
| 7d_25C | 7d_15C | 0.018838 | yes |
| 7d_25C | 7d_30C | 0.011993 | yes |
| 7d_25C | 10d_25C | 0.943440 | no |
| 7d_15C | 7d_30C | 0.959609 | no |
| 7d_15C | 10d_25C | 0.039348 | yes |
| 7d_30C | 10d_25C | 0.030863 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4245.t1 MEKSTKVDEYPDNTLTREISEDIKIEQGGQSGLNDPNHVELHRALKARHITMIAIGGAIGTGLIIGTGEALAKAG PGAILISYAWVGFIVFLVMCALGEMAAWLPLPSGFTGYAVRFVDPALGFTLGWTYWFKYIILSPNQMTAGALVIS FWIPTEQVNAGVWITIFLVIVVAINYFGVKFFGEFEFWLSSFKVIVILGIILLSFILMLGGGPDHDRKGFRYWKS PGAFNTYKMDGAPGRFLAFWSTMVSATFAYLGTELVGVTVGEAQNPRKTIPRAIKLTFYRILVFYVTSVLLVGTL VPYNSPSLLFALSDDNKAKGSAAASPFVVAIELAAIPILPHILNACILLFVFSAANSDLYIATRTIYGLAREGKA PKIFARTDRRGVPVPALAISSVIALLGYMNVSSDSRTVFKYFVNLVTIFGLLTWISILVTHIYFVRARKAQGIPE ESLAYKAPLGIAGSYFALGFCILIAFTKNFDVFIHNPKTYGDFDYKNFITAYLGIPLYLIMIFGYKFATGSKGVD PMTADLFTGKDEIDREEALYLAAKEAEAERNNDASWFYKKFVSWLF* |
| Coding | >Pro_DTO377G3_2|g4245.t1 ATGGAGAAGTCTACCAAAGTCGATGAATATCCGGACAATACCCTCACAAGGGAGATCAGTGAGGATATCAAGATT GAGCAAGGTGGTCAAAGTGGCCTGAACGACCCCAACCATGTTGAGCTGCATCGTGCGCTTAAGGCGAGACATATT ACTATGATTGCCATCGGTGGTGCTATTGGTACGGGCTTGATCATCGGAACCGGTGAAGCTCTTGCAAAGGCTGGC CCCGGTGCAATTCTCATTTCTTATGCTTGGGTTGGTTTCATCGTTTTCCTGGTCATGTGTGCTCTTGGGGAGATG GCGGCTTGGCTGCCATTGCCCTCTGGTTTCACTGGTTACGCTGTCCGATTTGTTGACCCTGCGCTTGGCTTCACT CTCGGTTGGACATACTGGTTCAAATATATCATTCTATCACCAAATCAAATGACTGCCGGTGCATTGGTTATATCA TTCTGGATACCCACAGAGCAGGTGAACGCTGGAGTATGGATCACCATCTTCCTGGTAATTGTCGTTGCCATCAAT TATTTCGGTGTGAAATTCTTCGGTGAATTTGAGTTCTGGCTTTCCTCATTCAAGGTCATTGTTATCCTCGGCATC ATCCTCCTATCCTTTATTCTCATGCTTGGTGGTGGACCGGACCATGACCGTAAGGGCTTCCGCTACTGGAAGAGC CCGGGTGCTTTCAACACCTATAAGATGGATGGAGCACCTGGTCGGTTCTTGGCTTTCTGGTCCACGATGGTGTCC GCTACATTCGCCTACCTCGGTACTGAGCTAGTCGGAGTGACGGTAGGAGAGGCACAAAACCCCCGCAAGACGATC CCTCGCGCGATCAAATTGACCTTCTACCGAATCCTGGTGTTCTACGTGACGAGTGTGCTTCTCGTCGGCACACTA GTTCCGTACAACTCCCCGAGCCTCCTCTTCGCCCTTTCAGACGATAACAAGGCAAAGGGCTCAGCTGCAGCTTCA CCTTTTGTGGTCGCCATCGAGCTGGCCGCCATCCCAATCCTGCCCCACATCCTGAACGCTTGTATTCTGCTCTTT GTCTTCTCAGCAGCCAACTCGGATTTGTACATCGCCACCCGTACGATCTATGGCCTGGCCCGCGAAGGCAAGGCC CCCAAGATCTTCGCCCGCACCGACCGCCGTGGCGTCCCCGTGCCTGCACTGGCTATCTCATCTGTGATTGCCTTG CTGGGCTACATGAACGTTAGCAGCGACTCCAGGACTGTGTTCAAGTACTTCGTGAACCTTGTCACCATCTTCGGT CTCCTCACATGGATCTCCATCCTGGTCACTCACATCTACTTCGTGCGTGCACGCAAAGCCCAGGGCATCCCTGAG GAAAGTTTGGCCTACAAGGCGCCCTTGGGCATCGCAGGCTCATACTTTGCTCTGGGATTCTGCATCCTCATCGCT TTCACTAAGAACTTCGACGTCTTCATCCACAACCCCAAAACATATGGAGACTTCGATTACAAGAACTTCATTACC GCCTACCTCGGTATCCCTCTATACCTCATTATGATCTTCGGATACAAGTTCGCGACCGGCTCCAAAGGTGTTGAC CCCATGACAGCCGATCTCTTTACTGGCAAAGACGAGATTGATCGCGAAGAGGCGTTGTATCTCGCCGCGAAGGAG GCCGAGGCAGAGAGGAACAACGACGCAAGCTGGTTCTATAAGAAATTCGTGTCTTGGCTTTTCTGA |
| Transcript | >Pro_DTO377G3_2|g4245.t1 ATGGAGAAGTCTACCAAAGTCGATGAATATCCGGACAATACCCTCACAAGGGAGATCAGTGAGGATATCAAGATT GAGCAAGGTGGTCAAAGTGGCCTGAACGACCCCAACCATGTTGAGCTGCATCGTGCGCTTAAGGCGAGACATATT ACTATGATTGCCATCGGTGGTGCTATTGGTACGGGCTTGATCATCGGAACCGGTGAAGCTCTTGCAAAGGCTGGC CCCGGTGCAATTCTCATTTCTTATGCTTGGGTTGGTTTCATCGTTTTCCTGGTCATGTGTGCTCTTGGGGAGATG GCGGCTTGGCTGCCATTGCCCTCTGGTTTCACTGGTTACGCTGTCCGATTTGTTGACCCTGCGCTTGGCTTCACT CTCGGTTGGACATACTGGTTCAAATATATCATTCTATCACCAAATCAAATGACTGCCGGTGCATTGGTTATATCA TTCTGGATACCCACAGAGCAGGTGAACGCTGGAGTATGGATCACCATCTTCCTGGTAATTGTCGTTGCCATCAAT TATTTCGGTGTGAAATTCTTCGGTGAATTTGAGTTCTGGCTTTCCTCATTCAAGGTCATTGTTATCCTCGGCATC ATCCTCCTATCCTTTATTCTCATGCTTGGTGGTGGACCGGACCATGACCGTAAGGGCTTCCGCTACTGGAAGAGC CCGGGTGCTTTCAACACCTATAAGATGGATGGAGCACCTGGTCGGTTCTTGGCTTTCTGGTCCACGATGGTGTCC GCTACATTCGCCTACCTCGGTACTGAGCTAGTCGGAGTGACGGTAGGAGAGGCACAAAACCCCCGCAAGACGATC CCTCGCGCGATCAAATTGACCTTCTACCGAATCCTGGTGTTCTACGTGACGAGTGTGCTTCTCGTCGGCACACTA GTTCCGTACAACTCCCCGAGCCTCCTCTTCGCCCTTTCAGACGATAACAAGGCAAAGGGCTCAGCTGCAGCTTCA CCTTTTGTGGTCGCCATCGAGCTGGCCGCCATCCCAATCCTGCCCCACATCCTGAACGCTTGTATTCTGCTCTTT GTCTTCTCAGCAGCCAACTCGGATTTGTACATCGCCACCCGTACGATCTATGGCCTGGCCCGCGAAGGCAAGGCC CCCAAGATCTTCGCCCGCACCGACCGCCGTGGCGTCCCCGTGCCTGCACTGGCTATCTCATCTGTGATTGCCTTG CTGGGCTACATGAACGTTAGCAGCGACTCCAGGACTGTGTTCAAGTACTTCGTGAACCTTGTCACCATCTTCGGT CTCCTCACATGGATCTCCATCCTGGTCACTCACATCTACTTCGTGCGTGCACGCAAAGCCCAGGGCATCCCTGAG GAAAGTTTGGCCTACAAGGCGCCCTTGGGCATCGCAGGCTCATACTTTGCTCTGGGATTCTGCATCCTCATCGCT TTCACTAAGAACTTCGACGTCTTCATCCACAACCCCAAAACATATGGAGACTTCGATTACAAGAACTTCATTACC GCCTACCTCGGTATCCCTCTATACCTCATTATGATCTTCGGATACAAGTTCGCGACCGGCTCCAAAGGTGTTGAC CCCATGACAGCCGATCTCTTTACTGGCAAAGACGAGATTGATCGCGAAGAGGCGTTGTATCTCGCCGCGAAGGAG GCCGAGGCAGAGAGGAACAACGACGCAAGCTGGTTCTATAAGAAATTCGTGTCTTGGCTTTTCTGA |
| Gene | >Pro_DTO377G3_2|g4245.t1 ATGGAGAAGTCTACCAAAGTCGATGAATATCCGGACAATACCCTCACAAGGGAGATCAGTGAGGATATCAAGATT GAGCAAGGTGGTCAAAGTGGCCTGAACGACCCCAACCATGTTGAGCTGCATCGTGCGCTTAAGGCGAGACATATT ACTATGATTGGTGGGTGTCGTTCTGAGTCGGACACGAGCATTCGTTGACAGTAAACAGCCATCGGTGGTGCTATT GGTACGGGCTTGATCATCGGAACCGGTGAAGCTCTTGCAAAGTAAGTGATTGTTTTCCCTACCCATTTTGTTCTG AGATCCAAGGCTAACCAGATGTCGTACAGGGCTGGCGTGAGTGTTGAAACCGAAATTGACCCCCGAACCTTCTTG CTGACTTGAATAGCCCGGTGCAATTCTCATTTCTTATGCTTGGGTTGGTTTCATCGTTTTCCTGGTCATGTGTGC TCTTGGGGAGATGGCGGCTTGGCTGCCATTGCCCTCTGGTTTCACTGGTTACGCTGTCCGATTTGTTGACCCTGC GCTTGGCTTCACTCTCGGTTGGACGTATGTACGACTCATTCCTATAAAAATTGATCTCGCTAACACGAAACCCGA ATCCAGATACTGGTTCAAATATATCATTCTATCACCAAATCAAATGACTGCCGGTGCATTGGTTATATCATTCTG GATACCCACAGAGCAGGTGAACGCTGGAGTATGGATCACCATCTTCCTGGTAATTGTCGTTGCCATCAATTATTT CGGTGTGAAATTCTTCGGTGAATTTGAGTTCTGGCTTTCCTCATTCAAGGTCATTGTTATCCTCGGCATCATCCT CCTATCCTTTATTCTCATGCTTGGTGGTGGACCGGACCATGACCGTAAGGGCTTCCGCTACTGGAAGAGCCCGGG TGCTTTCAACACCTATAAGATGGATGGAGCACCTGGTCGGTTCTTGGCTTTCTGGTCCACGATGGTGTCCGCTAC ATTCGCCTACCTCGGTACTGAGCTAGTCGGAGTGACGGTAGGAGAGGCACAAAACCCCCGCAAGACGATCCCTCG CGCGATCAAATTGACCTTCTACCGAATCCTGGTGTTCTACGTGACGAGTGTGCTTCTCGTCGGCACACTAGTTCC GTACAACTCCCCGAGCCTCCTCTTCGCCCTTTCAGACGATAACAAGGCAAAGGGCTCAGCTGCAGCTTCACCTTT TGTGGTCGCCATCGAGCTGGCCGCCATCCCAATCCTGCCCCACATCCTGAACGCTTGTATTCTGCTCTTTGTCTT CTCAGCAGCCAACTCGGATTTGTACATCGCCACCCGTACGATCTATGGCCTGGCCCGCGAAGGCAAGGCCCCCAA GATCTTCGCCCGCACCGACCGCCGTGGCGTCCCCGTGCCTGCACTGGCTATCTCATCTGTGATTGCCTTGCTGGG CTACATGAACGTTAGCAGCGACTCCAGGACTGTGTTCAAGTACTTCGTGAACCTTGTCACCATCTTCGGTCTCCT CACATGGATCTCCATCCTGGTCACTCACATCTACTTCGTGCGTGCACGCAAAGCCCAGGGCATCCCTGAGGAAAG TTTGGCCTACAAGGCGCCCTTGGGCATCGCAGGCTCATACTTTGCTCTGGGATTCTGCATCCTCATCGCTTTCAC TAAGAACTTCGACGTCTTCATCCACAACCCCAAAACATATGGAGACTTCGATTACAAGAACTTCATTACCGCCTA CCTCGGTATCCCTCTATACCTCATTATGATCTTCGGATACAAGTTCGCGACCGGCTCCAAAGGTGTTGACCCCAT GACAGCCGATCTCTTTACTGGCAAAGACGAGATTGATCGCGAAGAGGCGTTGTATCTCGCCGCGAAGGAGGCCGA GGCAGAGAGGAACAACGACGCAAGCTGGTTCTATAAGAAATTCGTGTCTTGGCTTTTCTGA |