© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4240.t1 |
| Gene name | |
| Location | scaffold_08:441622..443221 |
| Strand | - |
| Gene length (bp) | 1599 |
| Transcript length (bp) | 1503 |
| Coding sequence length (bp) | 1503 |
| Protein length (aa) | 501 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02535 | Zip | ZIP Zinc transporter | 1.6E-15 | 295 | 465 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 49 | 71 | 22 |
| 3 | 86 | 108 | 22 |
| 4 | 378 | 400 | 22 |
| 5 | 410 | 432 | 22 |
| 6 | 445 | 467 | 22 |
| 7 | 477 | 499 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 174.97 | 105.41 | 244.53 |
| 5d_25C | Five days - 25 degrees Celsius | 250.98 | 148.84 | 353.13 |
| 7d_25C | Seven days - 25 degrees Celsius | 255.29 | 150.18 | 360.40 |
| 10d_25C | Ten days - 25 degrees Celsius | 327.48 | 189.97 | 464.98 |
| 7d_15C | Seven days - 15 degrees Celsius | 211.68 | 124.14 | 299.21 |
| 7d_30C | Seven days - 30 degrees Celsius | 235.68 | 139.38 | 331.98 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.100869 | no |
| 3d_25C | 7d_25C | 0.091337 | no |
| 3d_25C | 7d_15C | 0.471100 | no |
| 3d_25C | 7d_30C | 0.200959 | no |
| 3d_25C | 10d_25C | 0.001804 | yes |
| 5d_25C | 7d_25C | 0.963305 | no |
| 5d_25C | 7d_15C | 0.530561 | no |
| 5d_25C | 7d_30C | 0.843414 | no |
| 5d_25C | 10d_25C | 0.277165 | no |
| 7d_25C | 7d_15C | 0.487426 | no |
| 7d_25C | 7d_30C | 0.799478 | no |
| 7d_25C | 10d_25C | 0.324525 | no |
| 7d_15C | 7d_30C | 0.721922 | no |
| 7d_15C | 10d_25C | 0.051659 | no |
| 7d_30C | 10d_25C | 0.161860 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 2764 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4240.t1 MSANDLRGWVMSTVSGVACVLGSSIICVDVLVQVVSRRKSFQIANSSHFLSASLCLSAGVMLFTSLYSMLPTSKQ YLTRAGFSPAVSAYMLIGLFIAGVAGIQILSAFAHRYIPSHVVDCAHTHDESENDAERGEAAHEDHVHNDTNGHT ERTPLLQHNKPSSFKSTPAVVQASQHIEPAPRRRDTMRAMLARRITSFMGGVKSACDEDGPCFGVSQTCGLECNK VLPPPNSDESARPNLLHCEGISVPLESEISRVGIDDIEHVPPTPEGRDFDNISVQHDMHRSSTSSPILDPHLSHR SRPHSEHHHHDESHSYLDDIDSGRPKSAGGNPHHHHVPKNAFLSIGLQTSLAIALHKLPEGFITYATNHASPTLG MTVFLALVIHNIVEGFAMSLPLYLALNSRWRAMFWSSLLGGISQPAGAGLAALWIWSTGQRGSDDATGPSWGIYG GMFAVTAGVMTSVALQLFSEGLGLTHHRGMGIGFAVGGMGLMGLSFALTA* |
| Coding | >Pro_DTO377G3_2|g4240.t1 ATGTCTGCCAACGACCTTCGGGGATGGGTGATGAGCACCGTCTCAGGCGTCGCATGCGTCCTTGGTTCCTCTATC ATCTGCGTCGATGTGCTGGTTCAAGTGGTCTCCCGCCGCAAGAGCTTCCAGATCGCCAACAGTAGTCATTTCCTG TCGGCATCATTATGTCTCAGTGCTGGAGTCATGCTCTTTACCTCCCTCTACAGCATGCTTCCCACATCCAAGCAG TACCTTACCCGCGCCGGCTTCTCTCCCGCTGTATCTGCATATATGTTGATCGGTCTTTTCATTGCTGGAGTGGCC GGCATTCAAATACTATCCGCGTTCGCACATCGTTACATCCCATCTCATGTTGTCGACTGTGCCCATACCCATGAC GAGTCAGAAAATGATGCCGAGCGCGGCGAGGCCGCACACGAGGACCATGTCCACAACGATACAAATGGACATACC GAACGAACACCGCTGTTGCAACATAATAAGCCATCTTCATTCAAGTCAACGCCAGCGGTAGTACAAGCGAGCCAA CACATCGAGCCGGCACCCAGACGCCGCGACACGATGCGGGCAATGCTAGCGCGCCGCATTACGTCGTTCATGGGT GGCGTAAAATCCGCCTGTGACGAGGACGGGCCTTGCTTCGGGGTTTCTCAAACCTGTGGCCTCGAATGCAACAAA GTGCTTCCACCACCCAACAGCGATGAGAGCGCGCGACCAAACTTGCTGCATTGTGAAGGTATATCCGTGCCGCTG GAATCGGAAATTTCCCGCGTAGGAATTGACGACATTGAACATGTGCCTCCCACTCCGGAAGGGAGAGATTTTGAC AACATCTCTGTACAGCATGACATGCACCGATCGTCCACTTCGTCTCCCATTTTAGACCCACATTTAAGTCATCGA TCTCGTCCGCATTCTGAGCATCATCACCATGACGAATCTCATAGCTACCTGGACGATATTGATTCTGGGCGTCCC AAATCTGCCGGCGGCAACCCCCACCACCATCACGTTCCTAAAAATGCATTCCTTTCCATTGGGCTTCAAACCTCA CTCGCCATTGCTCTACATAAGCTTCCAGAGGGGTTCATTACTTACGCCACAAACCACGCCAGCCCAACCCTCGGT ATGACAGTATTTCTGGCTCTAGTTATCCACAACATTGTGGAGGGCTTCGCCATGTCACTTCCGCTCTATCTAGCC CTCAATTCCCGCTGGAGAGCAATGTTCTGGTCTAGTCTCCTAGGAGGTATCAGTCAACCAGCCGGTGCTGGACTC GCAGCGCTCTGGATCTGGAGCACTGGGCAACGCGGTAGCGACGATGCCACTGGTCCCTCGTGGGGTATATATGGA GGTATGTTTGCCGTCACCGCCGGAGTCATGACTTCGGTTGCGTTGCAACTTTTCAGCGAGGGACTTGGGCTCACC CATCACCGCGGAATGGGTATCGGGTTCGCTGTGGGAGGCATGGGGTTGATGGGCCTCAGCTTTGCATTGACCGCT TGA |
| Transcript | >Pro_DTO377G3_2|g4240.t1 ATGTCTGCCAACGACCTTCGGGGATGGGTGATGAGCACCGTCTCAGGCGTCGCATGCGTCCTTGGTTCCTCTATC ATCTGCGTCGATGTGCTGGTTCAAGTGGTCTCCCGCCGCAAGAGCTTCCAGATCGCCAACAGTAGTCATTTCCTG TCGGCATCATTATGTCTCAGTGCTGGAGTCATGCTCTTTACCTCCCTCTACAGCATGCTTCCCACATCCAAGCAG TACCTTACCCGCGCCGGCTTCTCTCCCGCTGTATCTGCATATATGTTGATCGGTCTTTTCATTGCTGGAGTGGCC GGCATTCAAATACTATCCGCGTTCGCACATCGTTACATCCCATCTCATGTTGTCGACTGTGCCCATACCCATGAC GAGTCAGAAAATGATGCCGAGCGCGGCGAGGCCGCACACGAGGACCATGTCCACAACGATACAAATGGACATACC GAACGAACACCGCTGTTGCAACATAATAAGCCATCTTCATTCAAGTCAACGCCAGCGGTAGTACAAGCGAGCCAA CACATCGAGCCGGCACCCAGACGCCGCGACACGATGCGGGCAATGCTAGCGCGCCGCATTACGTCGTTCATGGGT GGCGTAAAATCCGCCTGTGACGAGGACGGGCCTTGCTTCGGGGTTTCTCAAACCTGTGGCCTCGAATGCAACAAA GTGCTTCCACCACCCAACAGCGATGAGAGCGCGCGACCAAACTTGCTGCATTGTGAAGGTATATCCGTGCCGCTG GAATCGGAAATTTCCCGCGTAGGAATTGACGACATTGAACATGTGCCTCCCACTCCGGAAGGGAGAGATTTTGAC AACATCTCTGTACAGCATGACATGCACCGATCGTCCACTTCGTCTCCCATTTTAGACCCACATTTAAGTCATCGA TCTCGTCCGCATTCTGAGCATCATCACCATGACGAATCTCATAGCTACCTGGACGATATTGATTCTGGGCGTCCC AAATCTGCCGGCGGCAACCCCCACCACCATCACGTTCCTAAAAATGCATTCCTTTCCATTGGGCTTCAAACCTCA CTCGCCATTGCTCTACATAAGCTTCCAGAGGGGTTCATTACTTACGCCACAAACCACGCCAGCCCAACCCTCGGT ATGACAGTATTTCTGGCTCTAGTTATCCACAACATTGTGGAGGGCTTCGCCATGTCACTTCCGCTCTATCTAGCC CTCAATTCCCGCTGGAGAGCAATGTTCTGGTCTAGTCTCCTAGGAGGTATCAGTCAACCAGCCGGTGCTGGACTC GCAGCGCTCTGGATCTGGAGCACTGGGCAACGCGGTAGCGACGATGCCACTGGTCCCTCGTGGGGTATATATGGA GGTATGTTTGCCGTCACCGCCGGAGTCATGACTTCGGTTGCGTTGCAACTTTTCAGCGAGGGACTTGGGCTCACC CATCACCGCGGAATGGGTATCGGGTTCGCTGTGGGAGGCATGGGGTTGATGGGCCTCAGCTTTGCATTGACCGCT TGA |
| Gene | >Pro_DTO377G3_2|g4240.t1 ATGTCTGCCAACGACCTTCGGGGATGGGTGATGAGCACCGTCTCAGGCGTCGGTGAGCGTCGCCTGGAGTCTTTG AAATATTAGCCACTAACTATCTTCAGCATGCGTCCTTGGTTCCTCTATCATCTGCGTCGATGTGCTGGTTCAAGT GGTCTCCCGCCGCAAGAGCTTCCAGATCGCCAACAGTAGTCATTTCCTGTCGGCATCATTATGTCTCAGTGCTGG AGTCATGGTAGGCATTATTCTGGAGGAATAGTGAACTATGTTAATCCTAGGCAGCTCTTTACCTCCCTCTACAGC ATGCTTCCCACATCCAAGCAGTACCTTACCCGCGCCGGCTTCTCTCCCGCTGTATCTGCATATATGTTGATCGGT CTTTTCATTGCTGGAGTGGCCGGCATTCAAATACTATCCGCGTTCGCACATCGTTACATCCCATCTCATGTTGTC GACTGTGCCCATACCCATGACGAGTCAGAAAATGATGCCGAGCGCGGCGAGGCCGCACACGAGGACCATGTCCAC AACGATACAAATGGACATACCGAACGAACACCGCTGTTGCAACATAATAAGCCATCTTCATTCAAGTCAACGCCA GCGGTAGTACAAGCGAGCCAACACATCGAGCCGGCACCCAGACGCCGCGACACGATGCGGGCAATGCTAGCGCGC CGCATTACGTCGTTCATGGGTGGCGTAAAATCCGCCTGTGACGAGGACGGGCCTTGCTTCGGGGTTTCTCAAACC TGTGGCCTCGAATGCAACAAAGTGCTTCCACCACCCAACAGCGATGAGAGCGCGCGACCAAACTTGCTGCATTGT GAAGGTATATCCGTGCCGCTGGAATCGGAAATTTCCCGCGTAGGAATTGACGACATTGAACATGTGCCTCCCACT CCGGAAGGGAGAGATTTTGACAACATCTCTGTACAGCATGACATGCACCGATCGTCCACTTCGTCTCCCATTTTA GACCCACATTTAAGTCATCGATCTCGTCCGCATTCTGAGCATCATCACCATGACGAATCTCATAGCTACCTGGAC GATATTGATTCTGGGCGTCCCAAATCTGCCGGCGGCAACCCCCACCACCATCACGTTCCTAAAAATGCATTCCTT TCCATTGGGCTTCAAACCTCACTCGCCATTGCTCTACATAAGCTTCCAGAGGGGTTCATTACTTACGCCACAAAC CACGCCAGCCCAACCCTCGGTATGACAGTATTTCTGGCTCTAGTTATCCACAACATTGTGGAGGGCTTCGCCATG TCACTTCCGCTCTATCTAGCCCTCAATTCCCGCTGGAGAGCAATGTTCTGGTCTAGTCTCCTAGGAGGTATCAGT CAACCAGCCGGTGCTGGACTCGCAGCGCTCTGGATCTGGAGCACTGGGCAACGCGGTAGCGACGATGCCACTGGT CCCTCGTGGGGTATATATGGAGGTATGTTTGCCGTCACCGCCGGAGTCATGACTTCGGTTGCGTTGCAACTTTTC AGCGAGGGACTTGGGCTCACCCATCACCGCGGAATGGGTATCGGGTTCGCTGTGGGAGGCATGGGGTTGATGGGC CTCAGCTTTGCATTGACCGCTTGA |