Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4237.t1
Gene name
Locationscaffold_08:426687..427389
Strand-
Gene length (bp)702
Transcript length (bp)558
Coding sequence length (bp)558
Protein length (aa) 186

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04628 Sedlin_N Sedlin, N-terminal conserved region 1.9E-42 7 183

GO

GO Term Description Terminal node
GO:0005622 intracellular Yes
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Yes
GO:0046907 intracellular transport No
GO:0008150 biological_process No
GO:0051234 establishment of localization No
GO:0051641 cellular localization No
GO:0048193 Golgi vesicle transport No
GO:0016192 vesicle-mediated transport No
GO:0006810 transport No
GO:0005575 cellular_component No
GO:0051179 localization No
GO:0051649 establishment of localization in cell No
GO:0044464 cell part No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 28 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4237.t1
MSYYFTILSPTDTPLFNIAFGTSKGGGDGIARFRFPETAQYMNQFIIHSSLDILEEAQWTNGGMYLKHIDTYPPA
AAYITAFLTPSGARFLLLHQPPHLPSSTSTSGSIGSSSLLGTAGSTTRASSSSIAANPTSPQTEEAVRQFMNEVY
ESYVKTAMSPFYKQGMEIKSPVFRSRITAAGKKWL*
Coding >Pro_DTO377G3_2|g4237.t1
ATGTCCTACTACTTCACCATTCTATCACCCACTGACACACCTTTGTTCAACATCGCCTTTGGCACATCGAAGGGG
GGTGGTGATGGCATTGCTCGCTTCCGCTTTCCGGAGACAGCGCAGTACATGAACCAGTTCATCATCCACTCAAGT
CTGGACATATTGGAAGAAGCGCAATGGACCAATGGTGGAATGTACCTGAAGCATATCGACACCTACCCGCCGGCA
GCAGCCTACATCACGGCTTTCCTCACTCCAAGTGGCGCGCGCTTCCTCCTCCTCCACCAACCCCCGCATCTCCCC
TCTTCAACCAGCACAAGCGGCAGCATTGGCTCCTCCTCACTGCTAGGCACAGCTGGATCGACCACACGCGCCTCC
TCCAGCTCTATCGCCGCAAACCCGACCTCCCCGCAGACCGAAGAGGCTGTGCGCCAGTTCATGAACGAGGTATAC
GAGAGCTATGTCAAGACGGCGATGAGCCCATTCTATAAGCAGGGAATGGAGATCAAGAGTCCTGTTTTCAGATCG
CGGATTACTGCTGCAGGGAAAAAATGGCTGTAG
Transcript >Pro_DTO377G3_2|g4237.t1
ATGTCCTACTACTTCACCATTCTATCACCCACTGACACACCTTTGTTCAACATCGCCTTTGGCACATCGAAGGGG
GGTGGTGATGGCATTGCTCGCTTCCGCTTTCCGGAGACAGCGCAGTACATGAACCAGTTCATCATCCACTCAAGT
CTGGACATATTGGAAGAAGCGCAATGGACCAATGGTGGAATGTACCTGAAGCATATCGACACCTACCCGCCGGCA
GCAGCCTACATCACGGCTTTCCTCACTCCAAGTGGCGCGCGCTTCCTCCTCCTCCACCAACCCCCGCATCTCCCC
TCTTCAACCAGCACAAGCGGCAGCATTGGCTCCTCCTCACTGCTAGGCACAGCTGGATCGACCACACGCGCCTCC
TCCAGCTCTATCGCCGCAAACCCGACCTCCCCGCAGACCGAAGAGGCTGTGCGCCAGTTCATGAACGAGGTATAC
GAGAGCTATGTCAAGACGGCGATGAGCCCATTCTATAAGCAGGGAATGGAGATCAAGAGTCCTGTTTTCAGATCG
CGGATTACTGCTGCAGGGAAAAAATGGCTGTAG
Gene >Pro_DTO377G3_2|g4237.t1
ATGTCCTACTACTTCACCATTCTATCACCCACTGACACACCTTTGTTCAACATCGCCTTTGGCACATCGAAGGGG
GGTGGTGATGGCATTGCTCGCTTCCGCTTTCCGGAGACAGCGCAGTACATGAACCAGTTCATCATCCACTCAAGT
CTGGACATATTGGAAGAAGCGCAATGGACCAATGGTGGAATGTAAGTCTAACAAGCTATCCCATATGTCAAATGG
CTACTGGGAACTGGTTCGAATCCACGAGGGGCATGTAAACACAGAGGAAACCACCCTCAGCCCGCGCTCCATCCC
ACATCAAACCTCCAAACCTGACATTATCACAAAAGGTACCTGAAGCATATCGACACCTACCCGCCGGCAGCAGCC
TACATCACGGCTTTCCTCACTCCAAGTGGCGCGCGCTTCCTCCTCCTCCACCAACCCCCGCATCTCCCCTCTTCA
ACCAGCACAAGCGGCAGCATTGGCTCCTCCTCACTGCTAGGCACAGCTGGATCGACCACACGCGCCTCCTCCAGC
TCTATCGCCGCAAACCCGACCTCCCCGCAGACCGAAGAGGCTGTGCGCCAGTTCATGAACGAGGTATACGAGAGC
TATGTCAAGACGGCGATGAGCCCATTCTATAAGCAGGGAATGGAGATCAAGAGTCCTGTTTTCAGATCGCGGATT
ACTGCTGCAGGGAAAAAATGGCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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