© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4231.t1 |
| Gene name | |
| Location | scaffold_08:409192..411232 |
| Strand | + |
| Gene length (bp) | 2040 |
| Transcript length (bp) | 1860 |
| Coding sequence length (bp) | 1860 |
| Protein length (aa) | 620 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00732 | GMC_oxred_N | GMC oxidoreductase | 7.6E-67 | 15 | 325 |
| PF05199 | GMC_oxred_C | GMC oxidoreductase | 1.2E-29 | 471 | 604 |
| PF05834 | Lycopene_cycl | Lycopene cyclase protein | 7.2E-06 | 15 | 50 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 9.4E-05 | 18 | 48 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.55 | 1.14 | 5.95 |
| 5d_25C | Five days - 25 degrees Celsius | 2.35 | 0.63 | 4.08 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.56 | 1.15 | 5.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.32 | 0.48 | 4.15 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.47 | 1.12 | 5.82 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.96 | 1.32 | 6.59 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.347339 | no |
| 3d_25C | 7d_25C | 0.997455 | no |
| 3d_25C | 7d_15C | 0.972323 | no |
| 3d_25C | 7d_30C | 0.842113 | no |
| 3d_25C | 10d_25C | 0.352683 | no |
| 5d_25C | 7d_25C | 0.340824 | no |
| 5d_25C | 7d_15C | 0.382605 | no |
| 5d_25C | 7d_30C | 0.210485 | no |
| 5d_25C | 10d_25C | 0.981280 | no |
| 7d_25C | 7d_15C | 0.967799 | no |
| 7d_25C | 7d_30C | 0.844583 | no |
| 7d_25C | 10d_25C | 0.350686 | no |
| 7d_15C | 7d_30C | 0.804272 | no |
| 7d_15C | 10d_25C | 0.382087 | no |
| 7d_30C | 10d_25C | 0.217893 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4231.t1 MGNETLQQFAALDLDYLIIGGGTAGLAVAARLTEDTGFHVGVIEAGPSVLNIDDNGAINVPGRYGETIGSKYDWK FETTPQPGLGGRSLPWPRGRILGGTSALNLMAWNRGHRKDYDSWAELGNEGWGWEDLLPFFRRSENFHPPSAAHQ KYYQSSYDPQANGTKGPLHTTHAKQYGPTHQYWHETLNNLGVPSTPDSLAGDNTGVWNMVCTIDPDSQERSYSAS AYYHPISNRPNLHILTEATAMEILFNCDNDDWYAAGARVRWNGLEANIKAYEETIVCAGSVQSPQLLELSGIGDQ EVLRAAGIEMKVHSPNVGENLQEHMMTATIFEISSTIPTRDDILKDPIQREAADRAYYASQAGPWTVMPCSVAYC PLSKILSPKECDELHTQAKEIARETGRTHDAILAGQFEYGHARGQIEYLFDLGNWSPYFVSEPGKKYATMLQMLQ YPFSRGSIHIPAMGEHNYEKATIDDKPVIDPRYFLGPGEIDKKVMAKALRWGDRICQTKPLAKLIRRRVFPPPAK EADSEEKVYEEFVSNYTVTDWHPVGTCAMGEADGTNAGVVNDMLQVHGVYCLRVVDASIMPLQVGAHIQATVYAI AEKAAEMIIDDYFARNGPR* |
| Coding | >Pro_DTO377G3_2|g4231.t1 ATGGGTAATGAGACCCTTCAGCAGTTTGCTGCCCTCGACCTCGACTACTTGATTATAGGCGGAGGTACCGCAGGT CTAGCTGTTGCTGCACGCCTCACCGAGGACACTGGATTCCACGTGGGAGTCATCGAAGCCGGCCCATCGGTCTTG AACATAGATGATAATGGCGCGATCAATGTTCCTGGTCGGTATGGCGAAACCATCGGCTCTAAATACGATTGGAAA TTCGAAACTACCCCACAGCCGGGCCTAGGAGGAAGATCACTACCATGGCCACGAGGCCGTATATTAGGCGGCACA AGTGCGCTCAATCTTATGGCCTGGAACCGGGGTCATCGCAAAGACTATGATTCCTGGGCGGAACTTGGGAATGAG GGATGGGGATGGGAAGATCTACTGCCTTTTTTCCGCCGCAGCGAGAATTTCCACCCACCGAGTGCCGCTCATCAG AAATATTATCAGTCTTCCTATGATCCCCAGGCTAATGGAACGAAGGGCCCTCTTCATACAACTCATGCCAAGCAG TATGGTCCCACACACCAATATTGGCATGAGACGCTCAATAATCTCGGGGTTCCATCCACGCCCGATAGCCTGGCT GGCGATAATACAGGTGTCTGGAACATGGTGTGCACAATTGATCCAGATAGTCAGGAGCGCAGCTACTCTGCCTCT GCATACTACCACCCCATCTCAAATCGCCCAAACCTACACATACTGACTGAAGCAACTGCCATGGAGATCCTGTTT AATTGCGACAATGATGATTGGTACGCAGCAGGGGCCCGAGTACGCTGGAATGGACTGGAAGCAAACATCAAAGCA TACGAAGAGACAATCGTCTGTGCCGGTAGCGTGCAATCGCCGCAACTTCTAGAGCTATCTGGTATTGGCGATCAG GAAGTGTTAAGAGCTGCTGGAATTGAGATGAAAGTCCACAGTCCCAACGTAGGGGAGAATCTACAGGAGCATATG ATGACGGCTACCATCTTCGAAATATCCTCGACGATTCCAACCCGAGATGACATCCTCAAAGACCCCATTCAGCGC GAAGCTGCGGACCGCGCGTATTACGCTTCTCAAGCTGGGCCTTGGACTGTGATGCCCTGTTCAGTGGCGTACTGT CCGCTTTCGAAGATCCTATCGCCCAAGGAATGTGATGAATTACACACCCAGGCCAAGGAAATCGCGCGAGAGACA GGAAGGACACATGACGCTATTCTGGCTGGCCAATTCGAGTACGGTCATGCGCGCGGTCAAATCGAATATCTGTTC GACCTTGGTAACTGGAGCCCATATTTTGTCTCTGAGCCAGGAAAGAAATACGCCACAATGCTGCAAATGCTGCAG TACCCTTTCTCGCGCGGATCTATCCATATCCCTGCTATGGGCGAACACAATTATGAAAAGGCCACAATTGATGAT AAACCCGTGATTGATCCGCGATATTTTCTGGGGCCTGGGGAGATTGATAAGAAGGTCATGGCCAAAGCACTCAGG TGGGGAGATCGAATCTGCCAAACCAAGCCCTTGGCCAAACTCATTCGTCGTCGAGTCTTTCCTCCCCCTGCCAAG GAAGCAGACTCTGAAGAGAAAGTATACGAAGAGTTTGTCTCAAATTATACTGTCACTGACTGGCATCCGGTTGGG ACCTGCGCTATGGGTGAAGCAGATGGGACCAATGCTGGAGTTGTGAATGATATGCTACAGGTGCATGGCGTCTAT TGTCTGCGGGTTGTAGATGCTAGCATCATGCCATTGCAGGTTGGGGCACACATCCAAGCCACCGTATACGCGATT GCCGAAAAGGCGGCGGAGATGATCATAGATGACTATTTTGCTCGAAACGGTCCCCGATGA |
| Transcript | >Pro_DTO377G3_2|g4231.t1 ATGGGTAATGAGACCCTTCAGCAGTTTGCTGCCCTCGACCTCGACTACTTGATTATAGGCGGAGGTACCGCAGGT CTAGCTGTTGCTGCACGCCTCACCGAGGACACTGGATTCCACGTGGGAGTCATCGAAGCCGGCCCATCGGTCTTG AACATAGATGATAATGGCGCGATCAATGTTCCTGGTCGGTATGGCGAAACCATCGGCTCTAAATACGATTGGAAA TTCGAAACTACCCCACAGCCGGGCCTAGGAGGAAGATCACTACCATGGCCACGAGGCCGTATATTAGGCGGCACA AGTGCGCTCAATCTTATGGCCTGGAACCGGGGTCATCGCAAAGACTATGATTCCTGGGCGGAACTTGGGAATGAG GGATGGGGATGGGAAGATCTACTGCCTTTTTTCCGCCGCAGCGAGAATTTCCACCCACCGAGTGCCGCTCATCAG AAATATTATCAGTCTTCCTATGATCCCCAGGCTAATGGAACGAAGGGCCCTCTTCATACAACTCATGCCAAGCAG TATGGTCCCACACACCAATATTGGCATGAGACGCTCAATAATCTCGGGGTTCCATCCACGCCCGATAGCCTGGCT GGCGATAATACAGGTGTCTGGAACATGGTGTGCACAATTGATCCAGATAGTCAGGAGCGCAGCTACTCTGCCTCT GCATACTACCACCCCATCTCAAATCGCCCAAACCTACACATACTGACTGAAGCAACTGCCATGGAGATCCTGTTT AATTGCGACAATGATGATTGGTACGCAGCAGGGGCCCGAGTACGCTGGAATGGACTGGAAGCAAACATCAAAGCA TACGAAGAGACAATCGTCTGTGCCGGTAGCGTGCAATCGCCGCAACTTCTAGAGCTATCTGGTATTGGCGATCAG GAAGTGTTAAGAGCTGCTGGAATTGAGATGAAAGTCCACAGTCCCAACGTAGGGGAGAATCTACAGGAGCATATG ATGACGGCTACCATCTTCGAAATATCCTCGACGATTCCAACCCGAGATGACATCCTCAAAGACCCCATTCAGCGC GAAGCTGCGGACCGCGCGTATTACGCTTCTCAAGCTGGGCCTTGGACTGTGATGCCCTGTTCAGTGGCGTACTGT CCGCTTTCGAAGATCCTATCGCCCAAGGAATGTGATGAATTACACACCCAGGCCAAGGAAATCGCGCGAGAGACA GGAAGGACACATGACGCTATTCTGGCTGGCCAATTCGAGTACGGTCATGCGCGCGGTCAAATCGAATATCTGTTC GACCTTGGTAACTGGAGCCCATATTTTGTCTCTGAGCCAGGAAAGAAATACGCCACAATGCTGCAAATGCTGCAG TACCCTTTCTCGCGCGGATCTATCCATATCCCTGCTATGGGCGAACACAATTATGAAAAGGCCACAATTGATGAT AAACCCGTGATTGATCCGCGATATTTTCTGGGGCCTGGGGAGATTGATAAGAAGGTCATGGCCAAAGCACTCAGG TGGGGAGATCGAATCTGCCAAACCAAGCCCTTGGCCAAACTCATTCGTCGTCGAGTCTTTCCTCCCCCTGCCAAG GAAGCAGACTCTGAAGAGAAAGTATACGAAGAGTTTGTCTCAAATTATACTGTCACTGACTGGCATCCGGTTGGG ACCTGCGCTATGGGTGAAGCAGATGGGACCAATGCTGGAGTTGTGAATGATATGCTACAGGTGCATGGCGTCTAT TGTCTGCGGGTTGTAGATGCTAGCATCATGCCATTGCAGGTTGGGGCACACATCCAAGCCACCGTATACGCGATT GCCGAAAAGGCGGCGGAGATGATCATAGATGACTATTTTGCTCGAAACGGTCCCCGATGA |
| Gene | >Pro_DTO377G3_2|g4231.t1 ATGGGTAATGAGACCCTTCAGCAGTTTGCTGCCCTCGACCTCGACTACTTGATTATAGGCGGAGGTACCGCAGGT CTAGCTGTTGCTGCACGCCTCACCGAGGACACTGGATTCCACGTGGGAGTCATCGAAGCCGGCCCATCGGTCTTG AACATAGATGATAATGGCGCGATCAATGTTCCTGGTCGGTATGGCGAAACCATCGGCTCTAAATACGATTGGAAA TTCGAAACTACCCCACAGCCGGGCCTAGGAGGAAGATCACTACCATGGCCACGAGGCCGTATATTAGGCGGCACA AGTGCGCTCAATCTTATGGCCTGGAACCGGGGTCATCGCAAAGACTATGATTCCTGGGCGGAACTTGGGAATGAG GGATGGGGATGGGAAGATCTACTGTATGAGGACCAGCTTTCTGGGATTCGCGCTCTGTCTTGGATCTCACCCGCT GATCTGTGAGATGCTGAATTCCTTCCAGGCCTTTTTTCCGCCGCAGCGAGAATTTCCACCCACCGAGTGCCGCTC ATCAGAAATATTATCAGTCTTCCTATGATCCCCAGGCTAATGGAACGAAGGGCCCTCTTCATACAACTCATGCCA AGCAGTATGGTCCCACACACCAATATTGGCATGAGACGCTCAATAATCTCGGGGTTCCATCCACGCCCGATAGCC TGGCTGGCGATAATACAGGTGTCTGGAACATGGTGTGCACAATTGATCCAGATAGTCAGGAGCGCAGCTACTCTG CCTCTGCATACTACCACCCCATCTCAAATCGCCCAAACCTACACATACTGACTGAAGCAACTGCCATGGAGATCC TGTTTAATTGCGACAATGATGATTGGTACGCAGCAGGGGCCCGAGTACGCTGGAATGGACTGGAAGCAAACATCA AAGCATACGAAGAGACAATCGTCTGTGCCGGTAGCGTGCAATCGCCGCAACTTCTAGAGCTATCTGGTATTGGCG ATCAGGAAGTGTTAAGAGCTGCTGGAATTGAGATGAAAGTCCACAGTCCCAACGTAGGGGAGAATCTACAGGAGC ATATGAGTATGGAATATAAACAGTGTTCCTTGTGATCTGAGCTGACGTGTTCAAGTGACGGCTACCATCTTCGAA ATATCCTCGACGATTCCAACCCGAGATGACATCCTCAAAGACCCCATTCAGCGCGAAGCTGCGGACCGCGCGTAT TACGCTTCTCAAGCTGGGCCTTGGACTGTGATGCCCTGTTCAGTGGCGTACTGTCCGCTTTCGAAGATCCTATCG CCCAAGGAATGTGATGAATTACACACCCAGGCCAAGGAAATCGCGCGAGAGACAGGAAGGACACATGACGCTATT CTGGCTGGCCAATTCGAGTACGGTCATGCGCGCGGTCAAATCGAATATCTGTTCGACCTTGGTAACTGGAGCCCA TATTTTGTCTCTGAGCCAGGAAAGAAATACGCCACAATGCTGCAAATGCTGCAGTACCCTTTCTCGCGCGGATCT ATCCATATCCCTGCTATGGGCGAACACAATTATGAAAAGGCCACAATTGATGATAAACCCGTGATTGATCCGCGA TATTTTCTGGGGCCTGGGGAGATTGATAAGAAGGTCATGGCCAAAGCACTCAGGTGGGGAGATCGAATCTGCCAA ACCAAGCCCTTGGCCAAACTCATTCGTCGTCGAGTCTTTCCTCCCCCTGCCAAGGAAGCAGACTCTGAAGAGAAA GTATACGAAGAGTTTGTCTCAAATTATACTGTCACTGACTGGCATCGTATGTTTCCCCTCCAAGATTCATCCAGC AAATCACTAAATATGCGTATAGCGGTTGGGACCTGCGCTATGGGTGAAGCAGATGGGACCAATGCTGGAGTTGTG AATGATATGCTACAGGTGCATGGCGTCTATTGTCTGCGGGTTGTAGATGCTAGCATCATGCCATTGCAGGTTGGG GCACACATCCAAGCCACCGTATACGCGATTGCCGAAAAGGCGGCGGAGATGATCATAGATGACTATTTTGCTCGA AACGGTCCCCGATGA |