© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4220.t1 |
| Gene name | |
| Location | scaffold_08:378432..379220 |
| Strand | + |
| Gene length (bp) | 788 |
| Transcript length (bp) | 537 |
| Coding sequence length (bp) | 537 |
| Protein length (aa) | 179 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.7E-15 | 52 | 121 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 125.99 | 71.53 | 180.45 |
| 5d_25C | Five days - 25 degrees Celsius | 126.39 | 70.95 | 181.82 |
| 7d_25C | Seven days - 25 degrees Celsius | 114.91 | 63.11 | 166.70 |
| 10d_25C | Ten days - 25 degrees Celsius | 105.51 | 56.97 | 154.04 |
| 7d_15C | Seven days - 15 degrees Celsius | 121.54 | 68.11 | 174.98 |
| 7d_30C | Seven days - 30 degrees Celsius | 108.65 | 59.69 | 157.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.993930 | no |
| 3d_25C | 7d_25C | 0.781258 | no |
| 3d_25C | 7d_15C | 0.921381 | no |
| 3d_25C | 7d_30C | 0.627342 | no |
| 3d_25C | 10d_25C | 0.550657 | no |
| 5d_25C | 7d_25C | 0.780279 | no |
| 5d_25C | 7d_15C | 0.918431 | no |
| 5d_25C | 7d_30C | 0.627300 | no |
| 5d_25C | 10d_25C | 0.553476 | no |
| 7d_25C | 7d_15C | 0.881577 | no |
| 7d_25C | 7d_30C | 0.884684 | no |
| 7d_25C | 10d_25C | 0.812633 | no |
| 7d_15C | 7d_30C | 0.733122 | no |
| 7d_15C | 10d_25C | 0.656771 | no |
| 7d_30C | 10d_25C | 0.943320 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4220.t1 MSLLAVNTVDRLDRPSAYYVSKNKRRRYNDREEEEPQQQEKPDDKLKNATTLYVGNLSFYTTEEQIHELFAKCGE IKRLVMGLDRFNKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERIIRTDLDPGFEEGRQFGRGKSGGQVRDEYRE EYDPGRGGYGRAYDEQRQREEDEYGAGR* |
| Coding | >Pro_DTO377G3_2|g4220.t1 ATGAGTTTGCTGGCTGTAAACACGGTCGACCGACTGGATCGACCAAGCGCCTACTACGTCAGCAAGAACAAGCGA CGCAGATACAATGATCGTGAGGAGGAGGAACCGCAGCAACAGGAGAAACCCGATGACAAATTGAAAAATGCGACA ACCCTCTACGTGGGAAATCTTTCGTTTTATACCACCGAGGAACAGATTCATGAACTCTTCGCCAAGTGCGGCGAG ATCAAGCGACTTGTAATGGGCCTCGACCGATTCAACAAAACACCCTGCGGCTTTTGCTTTGTCGAGTATTATACC CATCAGGATGCGCTAGATTGCTTGAAGTACATCGGAGGAACCAAGCTGGACGAGCGGATCATTCGGACAGACCTT GACCCTGGATTTGAAGAAGGACGGCAATTTGGACGAGGCAAATCGGGCGGTCAAGTGCGCGATGAATACCGCGAA GAATACGATCCGGGCCGTGGTGGATATGGCCGCGCCTATGATGAGCAGCGCCAGCGCGAGGAGGACGAATACGGT GCTGGAAGATAG |
| Transcript | >Pro_DTO377G3_2|g4220.t1 ATGAGTTTGCTGGCTGTAAACACGGTCGACCGACTGGATCGACCAAGCGCCTACTACGTCAGCAAGAACAAGCGA CGCAGATACAATGATCGTGAGGAGGAGGAACCGCAGCAACAGGAGAAACCCGATGACAAATTGAAAAATGCGACA ACCCTCTACGTGGGAAATCTTTCGTTTTATACCACCGAGGAACAGATTCATGAACTCTTCGCCAAGTGCGGCGAG ATCAAGCGACTTGTAATGGGCCTCGACCGATTCAACAAAACACCCTGCGGCTTTTGCTTTGTCGAGTATTATACC CATCAGGATGCGCTAGATTGCTTGAAGTACATCGGAGGAACCAAGCTGGACGAGCGGATCATTCGGACAGACCTT GACCCTGGATTTGAAGAAGGACGGCAATTTGGACGAGGCAAATCGGGCGGTCAAGTGCGCGATGAATACCGCGAA GAATACGATCCGGGCCGTGGTGGATATGGCCGCGCCTATGATGAGCAGCGCCAGCGCGAGGAGGACGAATACGGT GCTGGAAGATAG |
| Gene | >Pro_DTO377G3_2|g4220.t1 ATGAGTTTGCTGGCTGTAAACACGGTCGACCGACTGGATCGACCAAGCGCCTACTACGTCAGCAAGGTGAGTACT CGCCCTGGACTGACTGCCCTTTACCAAGCTGTGTCGAAACCAGTCCAAATAGGCTATAGAGGCTGAACAAACTGT CCACAGAACAAGCGACGCAGATACAATGATCGTGAGGAGGAGGAACCGCAGCAACAGGAGAAACCCGATGACAAA TTGAAAAATGCGACAACCCTCTACGTGGGAAATCTGTATGCAAGCATGCAATAACTTAGACGCAATTGTCTTACT AACCAACCCAAGTTCGTTTTATACCACCGAGGAACAGATTCATGAACTCTTCGCCAAGTGAGAATGCGCTTTCGA GTCTCTTCGAATTATGATTAACCTCGAATTCTAGGTGCGGCGAGATCAAGCGACTTGTAATGGGCCTCGACCGAT TCAACAAAACACCCTGCGGCTTTTGCTTTGTCGAGTATTATACCCATCAGGATGCGCTAGATTGCTTGAAGTACA TCGGAGGAACCAAGCTGGACGAGCGGATCATTCGGACAGACCTTGACCCTGGATTTGAAGAAGGACGGCAATTTG GGTATGTGGTCTTCACCAATGGCGGCTTTAAGCTCGTACTTACTGACTTTCGCTGCAGACGAGGCAAATCGGGCG GTCAAGTGCGCGATGAATACCGCGAAGAATACGATCCGGGCCGTGGTGGATATGGCCGCGCCTATGATGAGCAGC GCCAGCGCGAGGAGGACGAATACGGTGCTGGAAGATAG |