© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4200.t1 |
| Gene name | |
| Location | scaffold_08:328319..330552 |
| Strand | - |
| Gene length (bp) | 2233 |
| Transcript length (bp) | 1767 |
| Coding sequence length (bp) | 1767 |
| Protein length (aa) | 589 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 6.4E-09 | 350 | 491 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 53 | 72 | 19 |
| 2 | 118 | 137 | 19 |
| 3 | 147 | 169 | 22 |
| 4 | 181 | 198 | 17 |
| 5 | 213 | 235 | 22 |
| 6 | 265 | 287 | 22 |
| 7 | 302 | 319 | 17 |
| 8 | 332 | 354 | 22 |
| 9 | 374 | 396 | 22 |
| 10 | 403 | 425 | 22 |
| 11 | 435 | 457 | 22 |
| 12 | 470 | 492 | 22 |
| 13 | 541 | 563 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 14.23 | 6.88 | 21.59 |
| 5d_25C | Five days - 25 degrees Celsius | 18.88 | 9.83 | 27.93 |
| 7d_25C | Seven days - 25 degrees Celsius | 14.72 | 7.23 | 22.21 |
| 10d_25C | Ten days - 25 degrees Celsius | 18.17 | 9.43 | 26.91 |
| 7d_15C | Seven days - 15 degrees Celsius | 10.15 | 4.52 | 15.79 |
| 7d_30C | Seven days - 30 degrees Celsius | 49.13 | 29.28 | 68.99 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.361470 | no |
| 3d_25C | 7d_25C | 0.939532 | no |
| 3d_25C | 7d_15C | 0.302309 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.442297 | no |
| 5d_25C | 7d_25C | 0.411079 | no |
| 5d_25C | 7d_15C | 0.025128 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.923592 | no |
| 7d_25C | 7d_15C | 0.237381 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.513885 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.039986 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4200.t1 MSLVNETNVDHRVSEDSKEPRNQAIPLGEPVSLLGKGSPGVRRIEIITSHFRFWDRIFLFIAIFLIAYVYGLDGT VRYTYQPYATQSYGEHSLLATINVLRAVIAAAAQPTAAKVADVFGRVELILLSIVFYTVGTIVEACATTLEAFAA GAVIYQIGYTSIMLLVEVLIADVTSSRSRLLFSYIPALPFIINTWISGNLTDAVLKITTWRWGIGMFAIIYPACA LPLIAVLFIVNRRAKKTGALESYKSSLQLLGKKKLAVELFWHLDIVGNILLIAMLACILVPFTLAGGVSAQWKTA KVIAPLIIGFLLIPVWIFWERTCQYPMLPFKLLKDRAVWGALGIPIMLNTAWYLQGDFLYTVLYVSFDESILSAT RITSLYSFVSVITGVILGLIVMKVRQLKPFIVAGTLLFMVAFGILIYFRGGVAHSSHSGVIGAQVLLGIAGGMFP YPAQASIQVASKHEHLAVITGIYLAAYNIGSALGNTVSGAIWNQVLPSELNHRLGNETLAAYVYAQPLAFAAVNP VGTPNRDNVILAYQKTQRLLCITGICLTVPLIAFALVIRNPTLTREQSLVKAESESGDSDFPR* |
| Coding | >Pro_DTO377G3_2|g4200.t1 ATGTCCCTCGTTAATGAGACCAACGTTGACCACCGCGTCAGTGAGGACTCGAAGGAGCCCCGCAACCAAGCCATC CCGCTTGGTGAGCCTGTCAGCCTGCTAGGCAAAGGCAGTCCGGGTGTTCGTCGTATCGAAATCATTACATCACAC TTCCGATTTTGGGATCGGATCTTCCTCTTTATTGCTATTTTCTTGATCGCTTATGTGTATGGCTTGGATGGAACT GTTCGTTACACGTACCAGCCCTATGCTACTCAGAGTTACGGCGAACACAGTCTTCTTGCGACCATCAATGTTCTC CGAGCCGTCATCGCTGCTGCTGCACAGCCCACTGCGGCAAAGGTTGCAGATGTATTCGGCAGAGTGGAACTTATC CTTCTTTCGATCGTCTTCTATACCGTGGGTACTATAGTGGAGGCATGCGCAACGACTTTGGAGGCTTTCGCTGCG GGGGCTGTTATCTACCAGATTGGATACACCAGTATTATGCTTCTAGTCGAAGTTCTAATCGCCGATGTGACTTCC AGCCGATCTCGTCTTCTTTTCTCCTACATCCCGGCCTTGCCGTTTATTATCAATACCTGGATCAGCGGCAACTTG ACAGATGCCGTTCTCAAGATCACCACATGGCGATGGGGCATCGGCATGTTTGCTATAATCTATCCCGCATGTGCT CTCCCTCTTATTGCAGTCCTTTTTATCGTCAACCGACGCGCGAAGAAGACTGGGGCACTTGAATCTTACAAGAGC TCTCTCCAGCTGCTAGGAAAAAAGAAACTGGCTGTAGAACTGTTCTGGCATCTGGACATCGTCGGAAACATTCTG TTGATTGCCATGCTGGCATGTATTCTTGTTCCATTCACCCTCGCTGGAGGCGTAAGTGCACAGTGGAAGACAGCG AAGGTAATTGCGCCACTTATCATAGGCTTTTTGCTGATCCCGGTCTGGATTTTCTGGGAGAGAACCTGCCAATAC CCGATGCTGCCATTCAAGCTTCTCAAAGACCGTGCTGTCTGGGGCGCCCTTGGAATCCCCATTATGCTCAACACT GCGTGGTACCTGCAAGGAGATTTCCTGTACACAGTTCTCTACGTGAGCTTCGACGAATCAATTCTCAGTGCGACT CGGATCACATCTCTTTACAGTTTTGTTTCTGTTATTACTGGCGTTATTCTCGGCCTCATTGTTATGAAAGTTCGC CAATTGAAGCCCTTCATCGTGGCCGGAACCCTCCTCTTCATGGTTGCATTCGGAATCCTCATCTATTTCCGAGGT GGTGTTGCGCACTCCAGTCATTCAGGCGTCATTGGTGCGCAAGTTCTGCTGGGTATTGCTGGTGGAATGTTCCCT TACCCAGCTCAAGCCAGCATTCAGGTTGCGTCTAAGCACGAACATCTTGCCGTGATAACTGGTATCTACCTCGCC GCTTACAACATCGGCAGCGCACTTGGAAATACTGTCTCCGGTGCGATCTGGAACCAAGTCTTGCCTTCTGAACTG AATCATAGACTCGGCAACGAAACACTCGCTGCGTATGTCTACGCCCAGCCTCTTGCATTTGCGGCGGTCAATCCC GTGGGTACTCCCAACCGAGACAACGTCATTCTCGCCTACCAGAAAACACAGCGTCTGCTATGTATTACGGGTATC TGCTTAACAGTCCCTTTGATTGCCTTCGCCTTAGTTATTCGCAACCCGACACTCACGAGGGAGCAGAGTCTGGTT AAGGCGGAGAGTGAGAGCGGTGATTCCGACTTTCCTCGGTGA |
| Transcript | >Pro_DTO377G3_2|g4200.t1 ATGTCCCTCGTTAATGAGACCAACGTTGACCACCGCGTCAGTGAGGACTCGAAGGAGCCCCGCAACCAAGCCATC CCGCTTGGTGAGCCTGTCAGCCTGCTAGGCAAAGGCAGTCCGGGTGTTCGTCGTATCGAAATCATTACATCACAC TTCCGATTTTGGGATCGGATCTTCCTCTTTATTGCTATTTTCTTGATCGCTTATGTGTATGGCTTGGATGGAACT GTTCGTTACACGTACCAGCCCTATGCTACTCAGAGTTACGGCGAACACAGTCTTCTTGCGACCATCAATGTTCTC CGAGCCGTCATCGCTGCTGCTGCACAGCCCACTGCGGCAAAGGTTGCAGATGTATTCGGCAGAGTGGAACTTATC CTTCTTTCGATCGTCTTCTATACCGTGGGTACTATAGTGGAGGCATGCGCAACGACTTTGGAGGCTTTCGCTGCG GGGGCTGTTATCTACCAGATTGGATACACCAGTATTATGCTTCTAGTCGAAGTTCTAATCGCCGATGTGACTTCC AGCCGATCTCGTCTTCTTTTCTCCTACATCCCGGCCTTGCCGTTTATTATCAATACCTGGATCAGCGGCAACTTG ACAGATGCCGTTCTCAAGATCACCACATGGCGATGGGGCATCGGCATGTTTGCTATAATCTATCCCGCATGTGCT CTCCCTCTTATTGCAGTCCTTTTTATCGTCAACCGACGCGCGAAGAAGACTGGGGCACTTGAATCTTACAAGAGC TCTCTCCAGCTGCTAGGAAAAAAGAAACTGGCTGTAGAACTGTTCTGGCATCTGGACATCGTCGGAAACATTCTG TTGATTGCCATGCTGGCATGTATTCTTGTTCCATTCACCCTCGCTGGAGGCGTAAGTGCACAGTGGAAGACAGCG AAGGTAATTGCGCCACTTATCATAGGCTTTTTGCTGATCCCGGTCTGGATTTTCTGGGAGAGAACCTGCCAATAC CCGATGCTGCCATTCAAGCTTCTCAAAGACCGTGCTGTCTGGGGCGCCCTTGGAATCCCCATTATGCTCAACACT GCGTGGTACCTGCAAGGAGATTTCCTGTACACAGTTCTCTACGTGAGCTTCGACGAATCAATTCTCAGTGCGACT CGGATCACATCTCTTTACAGTTTTGTTTCTGTTATTACTGGCGTTATTCTCGGCCTCATTGTTATGAAAGTTCGC CAATTGAAGCCCTTCATCGTGGCCGGAACCCTCCTCTTCATGGTTGCATTCGGAATCCTCATCTATTTCCGAGGT GGTGTTGCGCACTCCAGTCATTCAGGCGTCATTGGTGCGCAAGTTCTGCTGGGTATTGCTGGTGGAATGTTCCCT TACCCAGCTCAAGCCAGCATTCAGGTTGCGTCTAAGCACGAACATCTTGCCGTGATAACTGGTATCTACCTCGCC GCTTACAACATCGGCAGCGCACTTGGAAATACTGTCTCCGGTGCGATCTGGAACCAAGTCTTGCCTTCTGAACTG AATCATAGACTCGGCAACGAAACACTCGCTGCGTATGTCTACGCCCAGCCTCTTGCATTTGCGGCGGTCAATCCC GTGGGTACTCCCAACCGAGACAACGTCATTCTCGCCTACCAGAAAACACAGCGTCTGCTATGTATTACGGGTATC TGCTTAACAGTCCCTTTGATTGCCTTCGCCTTAGTTATTCGCAACCCGACACTCACGAGGGAGCAGAGTCTGGTT AAGGCGGAGAGTGAGAGCGGTGATTCCGACTTTCCTCGGTGA |
| Gene | >Pro_DTO377G3_2|g4200.t1 ATGTCCCTCGTTAATGAGACCAACGTTGACCACCGCGTCAGTGAGGACTCGAAGGAGCCCCGCAACCAAGCCATC CCGCTTGGTGAGCCTGTCAGCCTGCTAGGCAAAGGCAGTCCGGGTGTTCGTCGTATCGAAATCATTACATCACAC TTCCGATTTTGGGATCGGATCTTCCTCTTTATTGCTATTTTCTTGATCGCTTATGTGTATGGCTTGGATGGAACT GTTCGTTACACGTACCAGGTACGTATCTCGCAGTTCTGACGTCAAGATATATCGACGAGAATGGAGTATACTAAC ACCTCATGTCTTGAACAGCCCTATGCTACTCAGAGTTACGGCGAACACAGTCTTCTTGCGACCATCAATGTTCTC CGAGCCGTCATCGCTGCTGCTGCACAGGTACGGATATCCAGAGACCAACAATTCATCACAGCAGCTGACTATTCT TTTACAGCCCACTGCGGCAAAGGTTGCAGATGTATTCGGCAGAGTGGAACTTATCCTTCTTTCGATCGTCTTCTA TACCGTGGGTACTATAGTGGAGGCATGCGCAACGACTTTGGAGGCTTTCGCTGCGGGGGCTGTTATCTACCAGGT GAGATATACGCTCATGAAATCTTGGCCCGTGTCTAATATTGTCTAGATTGGATACACCAGTATTATGCTTCTAGT CGAAGTTCTAATCGCCGATGTGACTTCCAGCCGATCTCGTCTTCTTTTCTCCTACATCCCGGCCTTGCCGTTTAT TGTGCGTACGATACGTAATCCTACACGCTAACTGATTAATTTACTGAATCTCCTTTAGATCAATACCTGGATCAG CGGCAACTTGACAGATGCCGTTCTCAAGATCACCACATGGCGATGGGGCATCGGCATGTTTGCTATAATCTATCC CGCATGTGCTCTCCCTCTTATTGCAGTCCTTTTTATCGTCAACCGACGCGCGAAGAAGACTGGGGCACTTGAATC TTACAAGAGCTCTCTCCAGCTGCTAGGAAAAAAGAAACTGGCTGTAGAACTGTTCTGGCATCTGGACATCGTCGG AAACATTCTGTTGATTGCCATGCTGGCATGTATTCTTGTTCCATTCACCCTCGCTGGAGGCGTAAGTGCACAGTG GAAGACAGCGAAGGTAATTGCGCCACTTATCATAGGCTTTTTGCTGATCCCGGTCTGGATTTTCTGGGAGAGAAC CTGCCAATACCCGATGCTGCCATTCAAGGTAAGTCAAATGATTGAAGCCATTTAGGATTCTTACCGATTTAATTC GACTCTAGCTTCTCAAAGACCGTGCTGTCTGGGGCGCCCTTGGAATCCCCATTATGCTCAACACTGGTACGTCCT TCAGGATACCATCCATCCATGGTCGAGATTTAACATTTGTGTAGCGTGGTACCTGCAAGGAGATTTCCTGTACAC AGTTCTCTACGTGAGCTTCGACGAATCAATTCTCAGTGCGACTCGGATCACATCTCTTTACAGTTTTGTTTCTGT TATTACTGGCGTTATTCTCGGCCTCATTGTTATGAAAGTTCGCCAATTGAAGCCCTTCATCGTGGCCGGAACCCT CCTCTTCATGGTTGCATTCGGAATCCTCATCTATTTCCGAGGTGGTGTTGCGCACTCCAGTCATTCAGGCGTCAT TGGTGCGCAAGTTCTGCTGGGTATTGGTGAGTTATCACCTAGATTCCAGCGTTGCTTGAATATATCTAACGAAAA TTTCTAGCTGGTGGAATGTTCCCTTACCCAGCTCAAGCCAGCATTCAGGTTGCGTCTAAGCACGAACGTTAGTAC TCGCCAACGGGCTTTGTTCTACCAAAAAAAAAAAGACTCTAGGGCTAACAATCCCATAGATCTTGCCGTGATAAC TGGTATCTACCTCGCCGCTTACAACATCGGCAGCGCACTTGGAAATACTGTCTCCGGTGCGATCTGGAACCAAGT CTTGCCTTCTGAACTGAATCATAGACTCGGCAACGAAACACTCGCTGCGTATGTCTACGCCCAGCCTCTTGCATT TGCGGCGGTCAATCCCGTGGGTACTCCCAACCGAGACAACGTCATTCTCGCCTACCAGAAAACACAGCGTCTGCT ATGTATTACGGGTATCTGCTTAACAGTCCCTTTGATTGCCTTCGCCTTAGTTATTCGCAACCCGACACTCACGAG GGAGCAGAGTCTGGTTAAGGCGGAGAGTGAGAGCGGTGATTCCGACTTTCCTCGGTGA |