Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g4197.t1
Gene name
Location	scaffold_08:319210..321142
Strand	-
Gene length (bp)	1932
Transcript length (bp)	1746
Coding sequence length (bp)	1746
Protein length (aa)	582

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01416	PseudoU_synth_1	tRNA pseudouridine synthase	6.9E-11	355	459

GO

GO Term	Description	Terminal node
GO:0001522	pseudouridine synthesis	Yes
GO:0003723	RNA binding	Yes
GO:0009982	pseudouridine synthase activity	Yes
GO:0009451	RNA modification	Yes
GO:0005488	binding	No
GO:0003824	catalytic activity	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0016070	RNA metabolic process	No
GO:0008150	biological_process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0071704	organic substance metabolic process	No
GO:0003676	nucleic acid binding	No
GO:0043170	macromolecule metabolic process	No
GO:0008152	metabolic process	No
GO:0044238	primary metabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0043412	macromolecule modification	No
GO:0046483	heterocycle metabolic process	No
GO:0003674	molecular_function	No
GO:0006807	nitrogen compound metabolic process	No
GO:0016866	intramolecular transferase activity	No
GO:0097159	organic cyclic compound binding	No
GO:0016853	isomerase activity	No
GO:1901363	heterocyclic compound binding	No
GO:0090304	nucleic acid metabolic process	No
GO:0044237	cellular metabolic process	No
GO:0009987	cellular process	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 52	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	28.07	15.96	40.17
5d_25C	Five days - 25 degrees Celsius	30.48	17.47	43.49
7d_25C	Seven days - 25 degrees Celsius	32.65	18.94	46.35
10d_25C	Ten days - 25 degrees Celsius	33.37	19.39	47.36
7d_15C	Seven days - 15 degrees Celsius	26.72	15.01	38.44
7d_30C	Seven days - 30 degrees Celsius	30.07	17.24	42.90

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.805700	no
3d_25C	7d_25C	0.606884	no
3d_25C	7d_15C	0.891699	no
3d_25C	7d_30C	0.841957	no
3d_25C	10d_25C	0.537615	no
5d_25C	7d_25C	0.840542	no
5d_25C	7d_15C	0.667968	no
5d_25C	7d_30C	0.972464	no
5d_25C	10d_25C	0.779257	no
7d_25C	7d_15C	0.463532	no
7d_25C	7d_30C	0.804272	no
7d_25C	10d_25C	0.952700	no
7d_15C	7d_30C	0.716937	no
7d_15C	10d_25C	0.408903	no
7d_30C	10d_25C	0.742467	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g4197.t1 MADNKGTGGGGGGRRKNRDMGRAEWSRQAIDKRQRHEDKAEAKRRKIENGEDVSLPIYATQFSKEEIDSEERRPK KKVALLMGYSGTGYSGMQLNEHQRTIEGDLFTALVNVGAVSKANAADPKKSSFVRCARTDKGVHAAGNVVSLKMI VEDEDIIGKINAQLSPQIRVWGYEVTSKSFSCYQMCDSRVYEYLLPSHCLLPPHPSTYLGKKIIELADKAGELDA VTARQEEVAGYWEEADIEYIKPILETLPEDIRRIVEKSLYLDDSRDALQPTEEKDVSSAPAEQPAQQETSDQPMT KQPADAEASKPFVMDPRQKAIADAIKAIKAAYLTAKRAYRAPASRIARLQECLDRYEGTKNFHNYTIQKTHNDPS AKRHIKSFKVNTTPIIIDGTEWLSLKVHGQSFMMHQIRKMVAMATMVVRSGCHPDRITETYGPERIAIPKAPGLG LLLERPIFDAYNNKAQGLDRQPINFQKFEVEINEFKQREIYDRIFREEDQSAGFGSFFNHIDHFPAGYFLYVTSG GIPATKLATAPNAADPGSPKAKKTRGAPRAQQDALAAVEVESEDEGDAPAGGEQEG*
Coding	>Pro_DTO377G3_2\|g4197.t1 ATGGCCGACAACAAAGGAACAGGAGGCGGAGGTGGTGGAAGGCGTAAGAACCGCGATATGGGGCGAGCGGAATGG AGTCGCCAAGCGATAGATAAGCGACAGCGTCATGAAGACAAGGCCGAAGCCAAGCGTCGCAAGATCGAGAACGGC GAAGATGTCAGCTTGCCGATCTACGCTACCCAATTCTCCAAGGAGGAGATCGACAGCGAAGAGCGCCGCCCCAAA AAGAAGGTTGCGCTTCTGATGGGGTACTCGGGGACTGGATACTCCGGGATGCAGTTGAACGAGCACCAACGCACC ATTGAAGGTGATCTATTCACGGCCCTCGTCAACGTCGGCGCAGTTTCCAAAGCCAATGCGGCAGATCCCAAGAAA TCTTCCTTCGTCCGTTGTGCCCGCACAGATAAGGGTGTCCACGCAGCTGGAAATGTTGTGTCACTAAAGATGATT GTCGAAGATGAAGATATAATCGGGAAAATAAACGCTCAGCTCAGCCCCCAAATTCGTGTCTGGGGCTACGAAGTG ACCAGCAAAAGTTTCAGCTGCTACCAGATGTGCGACTCCCGAGTTTACGAGTATTTGCTGCCAAGTCACTGTCTC CTGCCGCCTCACCCAAGCACCTATCTTGGAAAGAAAATCATCGAGCTTGCCGACAAGGCAGGCGAGTTGGATGCA GTCACGGCTCGACAGGAAGAGGTCGCAGGCTATTGGGAAGAGGCTGATATAGAGTACATCAAGCCGATCTTAGAA ACCCTGCCTGAAGACATCCGCCGCATCGTCGAAAAGTCTCTCTACCTAGACGACTCCCGCGATGCACTCCAACCC ACAGAAGAGAAGGATGTCTCTTCGGCCCCCGCCGAGCAACCCGCGCAGCAGGAGACCAGCGATCAGCCCATGACT AAACAGCCGGCCGACGCAGAGGCCTCAAAGCCCTTTGTCATGGACCCCCGTCAAAAAGCCATCGCCGATGCCATC AAGGCCATCAAAGCAGCATACCTCACCGCCAAACGAGCCTACCGCGCTCCCGCTTCACGCATCGCCCGCCTGCAA GAATGTCTCGACCGCTACGAAGGTACGAAGAACTTTCATAACTACACGATCCAGAAGACGCACAACGACCCCTCG GCGAAACGGCACATCAAGTCATTCAAGGTGAACACAACGCCGATTATCATCGACGGCACGGAATGGCTCAGTCTG AAAGTCCATGGGCAGAGTTTCATGATGCACCAGATCCGTAAGATGGTCGCCATGGCTACGATGGTTGTCCGCTCA GGCTGCCATCCAGACCGGATCACCGAGACCTATGGTCCTGAGCGCATTGCTATTCCCAAAGCGCCTGGTTTGGGC CTCTTGCTTGAGCGGCCTATCTTCGACGCGTACAACAACAAGGCACAGGGTCTTGACCGTCAGCCGATCAATTTC CAGAAGTTTGAGGTGGAGATCAATGAGTTCAAGCAGCGGGAGATCTATGATCGAATTTTCCGGGAGGAGGACCAA AGTGCTGGCTTTGGTTCTTTCTTCAACCATATCGATCACTTCCCCGCAGGTTACTTCCTCTATGTTACTTCTGGT GGCATTCCAGCGACTAAACTCGCAACCGCACCTAACGCTGCTGACCCCGGCAGCCCCAAAGCTAAGAAGACTCGC GGCGCTCCGCGGGCTCAGCAGGATGCACTTGCTGCTGTGGAGGTTGAATCAGAAGATGAGGGCGATGCTCCAGCT GGCGGAGAGCAAGAGGGTTAA
Transcript	>Pro_DTO377G3_2\|g4197.t1 ATGGCCGACAACAAAGGAACAGGAGGCGGAGGTGGTGGAAGGCGTAAGAACCGCGATATGGGGCGAGCGGAATGG AGTCGCCAAGCGATAGATAAGCGACAGCGTCATGAAGACAAGGCCGAAGCCAAGCGTCGCAAGATCGAGAACGGC GAAGATGTCAGCTTGCCGATCTACGCTACCCAATTCTCCAAGGAGGAGATCGACAGCGAAGAGCGCCGCCCCAAA AAGAAGGTTGCGCTTCTGATGGGGTACTCGGGGACTGGATACTCCGGGATGCAGTTGAACGAGCACCAACGCACC ATTGAAGGTGATCTATTCACGGCCCTCGTCAACGTCGGCGCAGTTTCCAAAGCCAATGCGGCAGATCCCAAGAAA TCTTCCTTCGTCCGTTGTGCCCGCACAGATAAGGGTGTCCACGCAGCTGGAAATGTTGTGTCACTAAAGATGATT GTCGAAGATGAAGATATAATCGGGAAAATAAACGCTCAGCTCAGCCCCCAAATTCGTGTCTGGGGCTACGAAGTG ACCAGCAAAAGTTTCAGCTGCTACCAGATGTGCGACTCCCGAGTTTACGAGTATTTGCTGCCAAGTCACTGTCTC CTGCCGCCTCACCCAAGCACCTATCTTGGAAAGAAAATCATCGAGCTTGCCGACAAGGCAGGCGAGTTGGATGCA GTCACGGCTCGACAGGAAGAGGTCGCAGGCTATTGGGAAGAGGCTGATATAGAGTACATCAAGCCGATCTTAGAA ACCCTGCCTGAAGACATCCGCCGCATCGTCGAAAAGTCTCTCTACCTAGACGACTCCCGCGATGCACTCCAACCC ACAGAAGAGAAGGATGTCTCTTCGGCCCCCGCCGAGCAACCCGCGCAGCAGGAGACCAGCGATCAGCCCATGACT AAACAGCCGGCCGACGCAGAGGCCTCAAAGCCCTTTGTCATGGACCCCCGTCAAAAAGCCATCGCCGATGCCATC AAGGCCATCAAAGCAGCATACCTCACCGCCAAACGAGCCTACCGCGCTCCCGCTTCACGCATCGCCCGCCTGCAA GAATGTCTCGACCGCTACGAAGGTACGAAGAACTTTCATAACTACACGATCCAGAAGACGCACAACGACCCCTCG GCGAAACGGCACATCAAGTCATTCAAGGTGAACACAACGCCGATTATCATCGACGGCACGGAATGGCTCAGTCTG AAAGTCCATGGGCAGAGTTTCATGATGCACCAGATCCGTAAGATGGTCGCCATGGCTACGATGGTTGTCCGCTCA GGCTGCCATCCAGACCGGATCACCGAGACCTATGGTCCTGAGCGCATTGCTATTCCCAAAGCGCCTGGTTTGGGC CTCTTGCTTGAGCGGCCTATCTTCGACGCGTACAACAACAAGGCACAGGGTCTTGACCGTCAGCCGATCAATTTC CAGAAGTTTGAGGTGGAGATCAATGAGTTCAAGCAGCGGGAGATCTATGATCGAATTTTCCGGGAGGAGGACCAA AGTGCTGGCTTTGGTTCTTTCTTCAACCATATCGATCACTTCCCCGCAGGTTACTTCCTCTATGTTACTTCTGGT GGCATTCCAGCGACTAAACTCGCAACCGCACCTAACGCTGCTGACCCCGGCAGCCCCAAAGCTAAGAAGACTCGC GGCGCTCCGCGGGCTCAGCAGGATGCACTTGCTGCTGTGGAGGTTGAATCAGAAGATGAGGGCGATGCTCCAGCT GGCGGAGAGCAAGAGGGTTAA
Gene	>Pro_DTO377G3_2\|g4197.t1 ATGGCCGACAACAAAGGAACAGGAGGCGGAGGTGGTGGAAGGCGTAAGAACCGCGATATGGGGCGAGCGGAATGG AGGTATGTTGCGTCAATTGTAACCTCCCGTTCTTCGCATTGTCGGCTAACTAATTAAGTCGCCAAGCGATAGATA AGCGACAGCGTCATGAAGACAAGGCCGAAGCCAAGCGTCGCAAGATCGAGAACGGCGAAGATGTCAGCTTGCCGA TCTACGCTACCCAATTCTCCAAGGAGGAGATCGACAGCGAAGAGCGCCGCCCCAAAAAGAAGGTTGCGCTTCTGA TGGGGTACTCGGGGACTGGATACTCCGGGATGCAGTTGTAAGTCTTTTCTGCTTCGGTGTAAGGTAATATCCTTG CGCTAACAATGTTTGGTATAGGAACGAGCACCAACGCACCATTGAAGGTGATCTATTCACGGCCCTCGTCAACGT CGGCGCAGTTTCCAAAGCCAATGCGGCAGATCCCAAGAAATCTTCCTTCGTCCGTTGTGCCCGCACAGATAAGGG TGTCCACGCAGCTGGAAATGTTGTGTCACTAAAGATGATTGTCGAAGATGAAGATATAATCGGGAAAATAAACGC TCAGCTCAGCCCCCAAATTCGTGTCTGGGGCTACGAAGTGACCAGCAAAAGTTTCAGCTGCTACCAGATGTGCGA CTCCCGAGTTTACGAGTATTTGCTGCCAAGTCACTGTCTCCTGCCGCCTCACCCAAGCACCTATCTTGGAAAGAA AATCATCGAGCTTGCCGACAAGGCAGGCGAGTTGGATGCAGTCACGGCTCGACAGGAAGAGGTCGCAGGCTATTG GGAAGAGGCTGATATAGAGTACATCAAGCCGATCTTAGAAACCCTGCCTGAAGACATCCGCCGCATCGTCGAAAA GTCTCTCTACCTAGACGACTCCCGCGATGCACTCCAACCCACAGAAGAGAAGGATGTCTCTTCGGCCCCCGCCGA GCAACCCGCGCAGCAGGAGACCAGCGATCAGCCCATGACTAAACAGCCGGCCGACGCAGAGGCCTCAAAGCCCTT TGTCATGGACCCCCGTCAAAAAGCCATCGCCGATGCCATCAAGGCCATCAAAGCAGCATACCTCACCGCCAAACG AGCCTACCGCGCTCCCGCTTCACGCATCGCCCGCCTGCAAGAATGTCTCGACCGCTACGAAGGTACGAAGAACTT TCATAACTACACGATCCAGAAGACGCACAACGACCCCTCGGCGAAACGGCACATCAAGTCATTCAAGGTGAACAC AACGCCGATTATCATCGACGGCACGGAATGGCTCAGTCTGAAAGTCCATGGGCAGAGTTTCATGATGCACCAGAT CCGTAAGATGGTCGCCATGGCTACGATGGTTGTCCGCTCAGGCTGCCATCCAGACCGGATCACCGAGACCTATGG TCCTGAGCGCATTGCTATTCCCAAAGCGCCTGGTTTGGGCCTCTTGCTTGAGCGGCCTATCTTCGACGCGTACAA CAACAAGGCACAGGGTCTTGACCGTCAGCCGATCAATTTCCAGAAGTTTGAGGTGGAGATCAATGAGTTCAAGCA GCGGGAGATCTATGATCGAATTTTCCGGGAGGAGGACCAAAGTGCTGGGTATGTTATTATTCCAACCAACGTCCT CGTTTGATTTCACATTAAGACGGCAATACTGACTTTGACTGTAGCTTTGGTTCTTTCTTCAACCATATCGATCAC TTCCCCGCAGGTTACTTCCTCTATGTTACTTCTGGTGGCATTCCAGCGACTAAACTCGCAACCGCACCTAACGCT GCTGACCCCGGCAGCCCCAAAGCTAAGAAGACTCGCGGCGCTCCGCGGGCTCAGCAGGATGCACTTGCTGCTGTG GAGGTTGAATCAGAAGATGAGGGCGATGCTCCAGCTGGCGGAGAGCAAGAGGGTTAA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences