Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4197.t1
Gene name
Locationscaffold_08:319210..321142
Strand-
Gene length (bp)1932
Transcript length (bp)1746
Coding sequence length (bp)1746
Protein length (aa) 582

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01416 PseudoU_synth_1 tRNA pseudouridine synthase 1.0E-10 355 459

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0009982 pseudouridine synthase activity Yes
GO:0009451 RNA modification Yes
GO:0001522 pseudouridine synthesis Yes
GO:0009987 cellular process No
GO:0046483 heterocycle metabolic process No
GO:0016853 isomerase activity No
GO:0090304 nucleic acid metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0071704 organic substance metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0003824 catalytic activity No
GO:0044238 primary metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0008152 metabolic process No
GO:0016866 intramolecular transferase activity No
GO:0008150 biological_process No
GO:0003674 molecular_function No
GO:0006807 nitrogen compound metabolic process No
GO:0043412 macromolecule modification No
GO:0003676 nucleic acid binding No
GO:0006725 cellular aromatic compound metabolic process No
GO:0005488 binding No
GO:0016070 RNA metabolic process No
GO:0044237 cellular metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 52 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4197.t1
MADNKGTGGGGGGRRKNRDMGRAEWSRQAIDKRQRHEDKAEAKRRKIENGEDVSLPIYATQFSKEEIDSEERRPK
KKVALLMGYSGTGYSGMQLNEHQRTIEGDLFTALVNVGAVSKANAADPKKSSFVRCARTDKGVHAAGNVVSLKMI
VEDEDIIGKINAQLSPQIRVWGYEVTSKSFSCYQMCDSRVYEYLLPSHCLLPPHPSTYLGKKIIELADKAGELDA
VTARQEEVAGYWEEADIEYIKPILETLPEDIRRIVEKSLYLDDSRDALQPTEEKDVSSAPAEQPAQQETSDQPMT
KQPADAEASKPFVMDPRQKAIADAIKAIKAAYLTAKRAYRAPASRIARLQECLDRYEGTKNFHNYTIQKTHNDPS
AKRHIKSFKVNTTPIIIDGTEWLSLKVHGQSFMMHQIRKMVAMATMVVRSGCHPDRITETYGPERIAIPKAPGLG
LLLERPIFDAYNNKAQGLDRQPINFQKFEVEINEFKQREIYDRIFREEDQSAGFGSFFNHIDHFPAGYFLYVTSG
GIPATKLATAPNAADPGSPKAKKTRGAPRAQQDALAAVEVESEDEGDAPAGGEQEG*
Coding >Pro_DTO377G3_2|g4197.t1
ATGGCCGACAACAAAGGAACAGGAGGCGGAGGTGGTGGAAGGCGTAAGAACCGCGATATGGGGCGAGCGGAATGG
AGTCGCCAAGCGATAGATAAGCGACAGCGTCATGAAGACAAGGCCGAAGCCAAGCGTCGCAAGATCGAGAACGGC
GAAGATGTCAGCTTGCCGATCTACGCTACCCAATTCTCCAAGGAGGAGATCGACAGCGAAGAGCGCCGCCCCAAA
AAGAAGGTTGCGCTTCTGATGGGGTACTCGGGGACTGGATACTCCGGGATGCAGTTGAACGAGCACCAACGCACC
ATTGAAGGTGATCTATTCACGGCCCTCGTCAACGTCGGCGCAGTTTCCAAAGCCAATGCGGCAGATCCCAAGAAA
TCTTCCTTCGTCCGTTGTGCCCGCACAGATAAGGGTGTCCACGCAGCTGGAAATGTTGTGTCACTAAAGATGATT
GTCGAAGATGAAGATATAATCGGGAAAATAAACGCTCAGCTCAGCCCCCAAATTCGTGTCTGGGGCTACGAAGTG
ACCAGCAAAAGTTTCAGCTGCTACCAGATGTGCGACTCCCGAGTTTACGAGTATTTGCTGCCAAGTCACTGTCTC
CTGCCGCCTCACCCAAGCACCTATCTTGGAAAGAAAATCATCGAGCTTGCCGACAAGGCAGGCGAGTTGGATGCA
GTCACGGCTCGACAGGAAGAGGTCGCAGGCTATTGGGAAGAGGCTGATATAGAGTACATCAAGCCGATCTTAGAA
ACCCTGCCTGAAGACATCCGCCGCATCGTCGAAAAGTCTCTCTACCTAGACGACTCCCGCGATGCACTCCAACCC
ACAGAAGAGAAGGATGTCTCTTCGGCCCCCGCCGAGCAACCCGCGCAGCAGGAGACCAGCGATCAGCCCATGACT
AAACAGCCGGCCGACGCAGAGGCCTCAAAGCCCTTTGTCATGGACCCCCGTCAAAAAGCCATCGCCGATGCCATC
AAGGCCATCAAAGCAGCATACCTCACCGCCAAACGAGCCTACCGCGCTCCCGCTTCACGCATCGCCCGCCTGCAA
GAATGTCTCGACCGCTACGAAGGTACGAAGAACTTTCATAACTACACGATCCAGAAGACGCACAACGACCCCTCG
GCGAAACGGCACATCAAGTCATTCAAGGTGAACACAACGCCGATTATCATCGACGGCACGGAATGGCTCAGTCTG
AAAGTCCATGGGCAGAGTTTCATGATGCACCAGATCCGTAAGATGGTCGCCATGGCTACGATGGTTGTCCGCTCA
GGCTGCCATCCAGACCGGATCACCGAGACCTATGGTCCTGAGCGCATTGCTATTCCCAAAGCGCCTGGTTTGGGC
CTCTTGCTTGAGCGGCCTATCTTCGACGCGTACAACAACAAGGCACAGGGTCTTGACCGTCAGCCGATCAATTTC
CAGAAGTTTGAGGTGGAGATCAATGAGTTCAAGCAGCGGGAGATCTATGATCGAATTTTCCGGGAGGAGGACCAA
AGTGCTGGCTTTGGTTCTTTCTTCAACCATATCGATCACTTCCCCGCAGGTTACTTCCTCTATGTTACTTCTGGT
GGCATTCCAGCGACTAAACTCGCAACCGCACCTAACGCTGCTGACCCCGGCAGCCCCAAAGCTAAGAAGACTCGC
GGCGCTCCGCGGGCTCAGCAGGATGCACTTGCTGCTGTGGAGGTTGAATCAGAAGATGAGGGCGATGCTCCAGCT
GGCGGAGAGCAAGAGGGTTAA
Transcript >Pro_DTO377G3_2|g4197.t1
ATGGCCGACAACAAAGGAACAGGAGGCGGAGGTGGTGGAAGGCGTAAGAACCGCGATATGGGGCGAGCGGAATGG
AGTCGCCAAGCGATAGATAAGCGACAGCGTCATGAAGACAAGGCCGAAGCCAAGCGTCGCAAGATCGAGAACGGC
GAAGATGTCAGCTTGCCGATCTACGCTACCCAATTCTCCAAGGAGGAGATCGACAGCGAAGAGCGCCGCCCCAAA
AAGAAGGTTGCGCTTCTGATGGGGTACTCGGGGACTGGATACTCCGGGATGCAGTTGAACGAGCACCAACGCACC
ATTGAAGGTGATCTATTCACGGCCCTCGTCAACGTCGGCGCAGTTTCCAAAGCCAATGCGGCAGATCCCAAGAAA
TCTTCCTTCGTCCGTTGTGCCCGCACAGATAAGGGTGTCCACGCAGCTGGAAATGTTGTGTCACTAAAGATGATT
GTCGAAGATGAAGATATAATCGGGAAAATAAACGCTCAGCTCAGCCCCCAAATTCGTGTCTGGGGCTACGAAGTG
ACCAGCAAAAGTTTCAGCTGCTACCAGATGTGCGACTCCCGAGTTTACGAGTATTTGCTGCCAAGTCACTGTCTC
CTGCCGCCTCACCCAAGCACCTATCTTGGAAAGAAAATCATCGAGCTTGCCGACAAGGCAGGCGAGTTGGATGCA
GTCACGGCTCGACAGGAAGAGGTCGCAGGCTATTGGGAAGAGGCTGATATAGAGTACATCAAGCCGATCTTAGAA
ACCCTGCCTGAAGACATCCGCCGCATCGTCGAAAAGTCTCTCTACCTAGACGACTCCCGCGATGCACTCCAACCC
ACAGAAGAGAAGGATGTCTCTTCGGCCCCCGCCGAGCAACCCGCGCAGCAGGAGACCAGCGATCAGCCCATGACT
AAACAGCCGGCCGACGCAGAGGCCTCAAAGCCCTTTGTCATGGACCCCCGTCAAAAAGCCATCGCCGATGCCATC
AAGGCCATCAAAGCAGCATACCTCACCGCCAAACGAGCCTACCGCGCTCCCGCTTCACGCATCGCCCGCCTGCAA
GAATGTCTCGACCGCTACGAAGGTACGAAGAACTTTCATAACTACACGATCCAGAAGACGCACAACGACCCCTCG
GCGAAACGGCACATCAAGTCATTCAAGGTGAACACAACGCCGATTATCATCGACGGCACGGAATGGCTCAGTCTG
AAAGTCCATGGGCAGAGTTTCATGATGCACCAGATCCGTAAGATGGTCGCCATGGCTACGATGGTTGTCCGCTCA
GGCTGCCATCCAGACCGGATCACCGAGACCTATGGTCCTGAGCGCATTGCTATTCCCAAAGCGCCTGGTTTGGGC
CTCTTGCTTGAGCGGCCTATCTTCGACGCGTACAACAACAAGGCACAGGGTCTTGACCGTCAGCCGATCAATTTC
CAGAAGTTTGAGGTGGAGATCAATGAGTTCAAGCAGCGGGAGATCTATGATCGAATTTTCCGGGAGGAGGACCAA
AGTGCTGGCTTTGGTTCTTTCTTCAACCATATCGATCACTTCCCCGCAGGTTACTTCCTCTATGTTACTTCTGGT
GGCATTCCAGCGACTAAACTCGCAACCGCACCTAACGCTGCTGACCCCGGCAGCCCCAAAGCTAAGAAGACTCGC
GGCGCTCCGCGGGCTCAGCAGGATGCACTTGCTGCTGTGGAGGTTGAATCAGAAGATGAGGGCGATGCTCCAGCT
GGCGGAGAGCAAGAGGGTTAA
Gene >Pro_DTO377G3_2|g4197.t1
ATGGCCGACAACAAAGGAACAGGAGGCGGAGGTGGTGGAAGGCGTAAGAACCGCGATATGGGGCGAGCGGAATGG
AGGTATGTTGCGTCAATTGTAACCTCCCGTTCTTCGCATTGTCGGCTAACTAATTAAGTCGCCAAGCGATAGATA
AGCGACAGCGTCATGAAGACAAGGCCGAAGCCAAGCGTCGCAAGATCGAGAACGGCGAAGATGTCAGCTTGCCGA
TCTACGCTACCCAATTCTCCAAGGAGGAGATCGACAGCGAAGAGCGCCGCCCCAAAAAGAAGGTTGCGCTTCTGA
TGGGGTACTCGGGGACTGGATACTCCGGGATGCAGTTGTAAGTCTTTTCTGCTTCGGTGTAAGGTAATATCCTTG
CGCTAACAATGTTTGGTATAGGAACGAGCACCAACGCACCATTGAAGGTGATCTATTCACGGCCCTCGTCAACGT
CGGCGCAGTTTCCAAAGCCAATGCGGCAGATCCCAAGAAATCTTCCTTCGTCCGTTGTGCCCGCACAGATAAGGG
TGTCCACGCAGCTGGAAATGTTGTGTCACTAAAGATGATTGTCGAAGATGAAGATATAATCGGGAAAATAAACGC
TCAGCTCAGCCCCCAAATTCGTGTCTGGGGCTACGAAGTGACCAGCAAAAGTTTCAGCTGCTACCAGATGTGCGA
CTCCCGAGTTTACGAGTATTTGCTGCCAAGTCACTGTCTCCTGCCGCCTCACCCAAGCACCTATCTTGGAAAGAA
AATCATCGAGCTTGCCGACAAGGCAGGCGAGTTGGATGCAGTCACGGCTCGACAGGAAGAGGTCGCAGGCTATTG
GGAAGAGGCTGATATAGAGTACATCAAGCCGATCTTAGAAACCCTGCCTGAAGACATCCGCCGCATCGTCGAAAA
GTCTCTCTACCTAGACGACTCCCGCGATGCACTCCAACCCACAGAAGAGAAGGATGTCTCTTCGGCCCCCGCCGA
GCAACCCGCGCAGCAGGAGACCAGCGATCAGCCCATGACTAAACAGCCGGCCGACGCAGAGGCCTCAAAGCCCTT
TGTCATGGACCCCCGTCAAAAAGCCATCGCCGATGCCATCAAGGCCATCAAAGCAGCATACCTCACCGCCAAACG
AGCCTACCGCGCTCCCGCTTCACGCATCGCCCGCCTGCAAGAATGTCTCGACCGCTACGAAGGTACGAAGAACTT
TCATAACTACACGATCCAGAAGACGCACAACGACCCCTCGGCGAAACGGCACATCAAGTCATTCAAGGTGAACAC
AACGCCGATTATCATCGACGGCACGGAATGGCTCAGTCTGAAAGTCCATGGGCAGAGTTTCATGATGCACCAGAT
CCGTAAGATGGTCGCCATGGCTACGATGGTTGTCCGCTCAGGCTGCCATCCAGACCGGATCACCGAGACCTATGG
TCCTGAGCGCATTGCTATTCCCAAAGCGCCTGGTTTGGGCCTCTTGCTTGAGCGGCCTATCTTCGACGCGTACAA
CAACAAGGCACAGGGTCTTGACCGTCAGCCGATCAATTTCCAGAAGTTTGAGGTGGAGATCAATGAGTTCAAGCA
GCGGGAGATCTATGATCGAATTTTCCGGGAGGAGGACCAAAGTGCTGGGTATGTTATTATTCCAACCAACGTCCT
CGTTTGATTTCACATTAAGACGGCAATACTGACTTTGACTGTAGCTTTGGTTCTTTCTTCAACCATATCGATCAC
TTCCCCGCAGGTTACTTCCTCTATGTTACTTCTGGTGGCATTCCAGCGACTAAACTCGCAACCGCACCTAACGCT
GCTGACCCCGGCAGCCCCAAAGCTAAGAAGACTCGCGGCGCTCCGCGGGCTCAGCAGGATGCACTTGCTGCTGTG
GAGGTTGAATCAGAAGATGAGGGCGATGCTCCAGCTGGCGGAGAGCAAGAGGGTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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