Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4185.t1
Gene name
Locationscaffold_08:291001..291743
Strand+
Gene length (bp)742
Transcript length (bp)567
Coding sequence length (bp)567
Protein length (aa) 189

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain 1.9E-16 5 101
PF01479 S4 S4 domain 8.4E-14 114 160

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0019843 rRNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4185.t1
MVRELKHHEKKLLRKVDFHNYKSDGNHREHEIRQRYLLQDPMDYRKYNALCGSLRQLAHKLSQLDPDADPLRKKL
ESELLEKLWRMGILKQSREQGAGLSKVERDVTVSALCRRRLAVFMVRSGMVETIKAATTFIEQGHVRVGTEVVND
PAFLVTRNMEDFVTWVDSSKIKRNILRYREKLDDFDLL*
Coding >Pro_DTO377G3_2|g4185.t1
ATGGTCCGTGAACTCAAGCACCATGAGAAGAAACTTCTCCGGAAGGTCGACTTCCACAACTACAAGTCAGATGGC
AATCACCGCGAACATGAAATTCGGCAACGATACCTTCTCCAAGACCCAATGGACTACCGCAAATACAACGCGCTC
TGCGGTTCTCTGCGTCAGCTCGCACACAAGCTCTCCCAGCTAGACCCGGACGCGGACCCGCTGCGCAAGAAGCTC
GAATCCGAGTTGCTGGAGAAGCTATGGCGGATGGGAATCCTGAAGCAGTCCCGCGAGCAGGGCGCCGGTTTGTCC
AAGGTTGAGCGCGATGTTACAGTTTCCGCATTGTGCCGTCGTAGATTGGCTGTCTTCATGGTGCGCTCTGGCATG
GTTGAGACTATCAAGGCTGCTACTACTTTCATCGAGCAGGGCCATGTCCGTGTCGGTACGGAGGTCGTCAATGAT
CCTGCTTTCTTGGTTACCCGCAACATGGAGGACTTCGTCACCTGGGTTGATTCCAGTAAGATCAAGCGCAACATC
TTGCGTTACCGTGAGAAGCTGGATGACTTTGATCTTCTATGA
Transcript >Pro_DTO377G3_2|g4185.t1
ATGGTCCGTGAACTCAAGCACCATGAGAAGAAACTTCTCCGGAAGGTCGACTTCCACAACTACAAGTCAGATGGC
AATCACCGCGAACATGAAATTCGGCAACGATACCTTCTCCAAGACCCAATGGACTACCGCAAATACAACGCGCTC
TGCGGTTCTCTGCGTCAGCTCGCACACAAGCTCTCCCAGCTAGACCCGGACGCGGACCCGCTGCGCAAGAAGCTC
GAATCCGAGTTGCTGGAGAAGCTATGGCGGATGGGAATCCTGAAGCAGTCCCGCGAGCAGGGCGCCGGTTTGTCC
AAGGTTGAGCGCGATGTTACAGTTTCCGCATTGTGCCGTCGTAGATTGGCTGTCTTCATGGTGCGCTCTGGCATG
GTTGAGACTATCAAGGCTGCTACTACTTTCATCGAGCAGGGCCATGTCCGTGTCGGTACGGAGGTCGTCAATGAT
CCTGCTTTCTTGGTTACCCGCAACATGGAGGACTTCGTCACCTGGGTTGATTCCAGTAAGATCAAGCGCAACATC
TTGCGTTACCGTGAGAAGCTGGATGACTTTGATCTTCTATGA
Gene >Pro_DTO377G3_2|g4185.t1
ATGGTCCGTGAACTCAAGCACCATGAGAAGAAGTACGTCCGCACCTATAATTAATTACCCGCGCAGAAATCTCAA
TCCGATCCCATCCAACATTTTGAAAGCTTCAAGATACCACAAAAGATCAAAAGCTAACACTGAAACCCCTGCAGA
CTTCTCCGGAAGGTCGACTTCCACAACTACAAGTCAGATGGCAATCACCGCGAACATGAAATTCGGCAACGATAC
CTTCTCCAAGACCCAATGGACTACCGCAAATACAACGCGCTCTGCGGTTCTCTGCGTCAGCTCGCACACAAGCTC
TCCCAGCTAGACCCGGACGCGGACCCGCTGCGCAAGAAGCTCGAATCCGAGTTGCTGGAGAAGCTATGGCGGATG
GGAATCCTGAAGCAGTCCCGCGAGCAGGGCGCCGGTTTGTCCAAGGTTGAGCGCGATGTTACAGTTTCCGCATTG
TGCCGTCGTAGATTGGCTGTCTTCATGGTGCGCTCTGGCATGGTTGAGACTATCAAGGCTGTAAGTTGCGTGGGG
ATTTGGTTTGGGGTGGATTTTATGCTGACGATTGTTTCGCTAGGCTACTACTTTCATCGAGCAGGGCCATGTCCG
TGTCGGTACGGAGGTCGTCAATGATCCTGCTTTCTTGGTTACCCGCAACATGGAGGACTTCGTCACCTGGGTTGA
TTCCAGTAAGATCAAGCGCAACATCTTGCGTTACCGTGAGAAGCTGGATGACTTTGATCTTCTATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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