Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4171.t1
Gene name
Locationscaffold_08:249735..250303
Strand+
Gene length (bp)568
Transcript length (bp)249
Coding sequence length (bp)249
Protein length (aa) 83

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00240 ubiquitin Ubiquitin family 5.0E-25 3 74
PF11976 Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like 2.7E-14 2 71

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 46 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4171.t1
MLIKVRTLTGKEIELDIEPDYKVSRIKERVEEKEGIPPVQQRLIFGGKQMADDKTASEYNLEGGATLHLVLALRG
GCAAMLV*
Coding >Pro_DTO377G3_2|g4171.t1
ATGTTGATCAAGGTCCGAACTCTCACTGGCAAGGAGATCGAGCTCGATATCGAGCCTGACTACAAGGTCTCCCGG
ATAAAGGAGCGTGTTGAGGAGAAGGAGGGAATTCCTCCGGTCCAGCAACGACTCATCTTCGGCGGCAAGCAGATG
GCGGACGACAAGACAGCCTCAGAATATAACCTCGAAGGTGGCGCCACGCTCCACCTCGTGCTCGCTCTGCGTGGA
GGATGCGCTGCGATGTTGGTGTAA
Transcript >Pro_DTO377G3_2|g4171.t1
ATGTTGATCAAGGTCCGAACTCTCACTGGCAAGGAGATCGAGCTCGATATCGAGCCTGACTACAAGGTCTCCCGG
ATAAAGGAGCGTGTTGAGGAGAAGGAGGGAATTCCTCCGGTCCAGCAACGACTCATCTTCGGCGGCAAGCAGATG
GCGGACGACAAGACAGCCTCAGAATATAACCTCGAAGGTGGCGCCACGCTCCACCTCGTGCTCGCTCTGCGTGGA
GGATGCGCTGCGATGTTGGTGTAA
Gene >Pro_DTO377G3_2|g4171.t1
ATGTTGATCAAGTGCGTTTCTCAGCTCCAGCATGTCCATACCATTGCATCATCGAATGACCCCAAAATGTGAAAG
GCCACTCACCCCTAGACTTGCATGCTGACATTTCGCGTCCAAACAGGGTCCGAACTCTCACTGGCAAGGAGATCG
AGCTCGATATCGAGCCTGACTACAAGGTAAACCACCCGCCTTGAGGCATTTCCGGCTCCTCCCCGCACGGAACCA
CTCTAGCGTTCTACCGAATCAACACCCACAAACCCCGCTGCATCAACGCCCTCTGAATGCGCCTATACTGATACG
GACGGTTCTATTCAGGTCTCCCGGATAAAGGAGCGTGTTGAGGAGAAGGAGGGAATTCCTCCGGTCCAGCAACGA
CTCATCTTCGGCGGCAAGCAGATGTAAGAAACCACTCACTCAGTTATTTCCCCCTACTCGAACAAACCCAAGCTG
ACAACTTTTCATTAATAGGGCGGACGACAAGACAGCCTCAGAATATAACCTCGAAGGTGGCGCCACGCTCCACCT
CGTGCTCGCTCTGCGTGGAGGATGCGCTGCGATGTTGGTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail