© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g416.t1 |
| Gene name | |
| Location | scaffold_01:1057556..1059001 |
| Strand | + |
| Gene length (bp) | 1445 |
| Transcript length (bp) | 1092 |
| Coding sequence length (bp) | 1092 |
| Protein length (aa) | 364 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17863 | AAA_lid_2 | AAA lid domain | 1.0E-07 | 270 | 328 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 51.33 | 29.23 | 73.42 |
| 5d_25C | Five days - 25 degrees Celsius | 67.61 | 39.97 | 95.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 70.67 | 41.69 | 99.64 |
| 10d_25C | Ten days - 25 degrees Celsius | 83.13 | 49.97 | 116.28 |
| 7d_15C | Seven days - 15 degrees Celsius | 57.74 | 33.15 | 82.32 |
| 7d_30C | Seven days - 30 degrees Celsius | 66.33 | 39.04 | 93.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.265560 | no |
| 3d_25C | 7d_25C | 0.181721 | no |
| 3d_25C | 7d_15C | 0.706724 | no |
| 3d_25C | 7d_30C | 0.305275 | no |
| 3d_25C | 10d_25C | 0.029538 | yes |
| 5d_25C | 7d_25C | 0.899884 | no |
| 5d_25C | 7d_15C | 0.583201 | no |
| 5d_25C | 7d_30C | 0.957758 | no |
| 5d_25C | 10d_25C | 0.423883 | no |
| 7d_25C | 7d_15C | 0.457726 | no |
| 7d_25C | 7d_30C | 0.847352 | no |
| 7d_25C | 10d_25C | 0.557209 | no |
| 7d_15C | 7d_30C | 0.630252 | no |
| 7d_15C | 10d_25C | 0.115001 | no |
| 7d_30C | 10d_25C | 0.368719 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g416.t1 MDYTDLADIADIAQQLSDLEVALLLCLVAREHCLIETTSHCINDLAKELALIGSTTFNYSYCILDCSTATSIDDV FNDVLTPDARANYRPSRQWLNTESSSKRSSYKSLGDYSKLTPFSQLGSNVVNIVVAKNFNFVSDDIQMHMLQLMR SKELVTENGTLSAPEDFLFIPLVARDFDQLRPSLKLHLNDNLFISHFHSPDVGYTYLEENDWLSDGQMSASSVIH NSKGKQTKSATVSPLVVGQLRETSASVSTSAEVVRYIQDIVVFLRLSRAVAGGVSANANIHFSRFAQLLAPLHGI DYLTPSIVALAARKVFRHRIIVTPPGEDRSLQYGSNLRAVADILVDVTPDSILDGVLALEPPL* |
| Coding | >Pro_DTO377G3_2|g416.t1 ATGGATTATACAGATCTTGCTGATATTGCTGATATTGCTCAACAACTATCTGACCTTGAAGTGGCCCTTTTACTA TGCCTTGTTGCCCGCGAACATTGCTTGATCGAGACCACCAGCCACTGTATTAATGACCTTGCCAAAGAACTCGCC TTAATTGGCTCAACTACATTCAATTACTCATACTGCATCCTTGACTGTTCAACTGCAACATCTATTGACGACGTC TTTAATGACGTTCTCACCCCGGATGCACGCGCAAACTATCGCCCATCGCGTCAGTGGTTGAACACCGAATCATCA AGCAAACGTTCTTCCTATAAGAGCCTTGGGGATTACAGCAAATTAACTCCATTTTCACAACTCGGCAGTAACGTT GTCAATATTGTAGTCGCCAAAAACTTCAATTTTGTCAGCGATGATATCCAAATGCACATGCTGCAGTTAATGCGA TCGAAGGAGTTGGTCACCGAGAACGGGACCCTGAGTGCGCCTGAGGACTTCCTCTTCATTCCTCTTGTGGCACGA GATTTCGATCAGCTCCGGCCATCTTTGAAACTACATCTGAATGACAATCTCTTCATTTCTCATTTCCACAGCCCG GATGTTGGATATACCTATCTTGAAGAGAATGACTGGCTTTCAGATGGACAAATGTCGGCTTCCTCTGTCATTCAT AATTCAAAAGGCAAGCAAACGAAGAGCGCTACAGTCAGTCCGTTGGTGGTGGGTCAACTTCGAGAAACAAGTGCG TCGGTGAGCACGAGCGCGGAAGTCGTTCGATACATCCAGGATATCGTTGTATTTCTGCGGCTCAGTCGCGCTGTT GCAGGTGGTGTGTCTGCGAATGCAAATATTCATTTTTCTCGATTTGCACAACTTCTAGCTCCTCTGCATGGTATC GATTATTTGACTCCCTCCATCGTGGCCCTAGCCGCCAGGAAAGTCTTTCGCCATCGCATTATTGTCACTCCTCCT GGCGAAGACCGCAGTCTACAGTATGGGAGTAATTTACGTGCGGTAGCTGATATTCTCGTTGATGTGACACCGGAT TCGATACTAGATGGAGTTCTGGCGCTGGAGCCGCCTTTATGA |
| Transcript | >Pro_DTO377G3_2|g416.t1 ATGGATTATACAGATCTTGCTGATATTGCTGATATTGCTCAACAACTATCTGACCTTGAAGTGGCCCTTTTACTA TGCCTTGTTGCCCGCGAACATTGCTTGATCGAGACCACCAGCCACTGTATTAATGACCTTGCCAAAGAACTCGCC TTAATTGGCTCAACTACATTCAATTACTCATACTGCATCCTTGACTGTTCAACTGCAACATCTATTGACGACGTC TTTAATGACGTTCTCACCCCGGATGCACGCGCAAACTATCGCCCATCGCGTCAGTGGTTGAACACCGAATCATCA AGCAAACGTTCTTCCTATAAGAGCCTTGGGGATTACAGCAAATTAACTCCATTTTCACAACTCGGCAGTAACGTT GTCAATATTGTAGTCGCCAAAAACTTCAATTTTGTCAGCGATGATATCCAAATGCACATGCTGCAGTTAATGCGA TCGAAGGAGTTGGTCACCGAGAACGGGACCCTGAGTGCGCCTGAGGACTTCCTCTTCATTCCTCTTGTGGCACGA GATTTCGATCAGCTCCGGCCATCTTTGAAACTACATCTGAATGACAATCTCTTCATTTCTCATTTCCACAGCCCG GATGTTGGATATACCTATCTTGAAGAGAATGACTGGCTTTCAGATGGACAAATGTCGGCTTCCTCTGTCATTCAT AATTCAAAAGGCAAGCAAACGAAGAGCGCTACAGTCAGTCCGTTGGTGGTGGGTCAACTTCGAGAAACAAGTGCG TCGGTGAGCACGAGCGCGGAAGTCGTTCGATACATCCAGGATATCGTTGTATTTCTGCGGCTCAGTCGCGCTGTT GCAGGTGGTGTGTCTGCGAATGCAAATATTCATTTTTCTCGATTTGCACAACTTCTAGCTCCTCTGCATGGTATC GATTATTTGACTCCCTCCATCGTGGCCCTAGCCGCCAGGAAAGTCTTTCGCCATCGCATTATTGTCACTCCTCCT GGCGAAGACCGCAGTCTACAGTATGGGAGTAATTTACGTGCGGTAGCTGATATTCTCGTTGATGTGACACCGGAT TCGATACTAGATGGAGTTCTGGCGCTGGAGCCGCCTTTATGA |
| Gene | >Pro_DTO377G3_2|g416.t1 ATGGATTATACAGATCTTGCTGATATTGCTGATATTGCTCAACAACTATCTGACCTTGAAGTGGCCCTTTTACTA TGCCTTGTTGCCCGCGAACATTGCTTGATCGAGACCACCAGCCACTGTATTAATGACCTTGCCAAAGAACTCGCC TTAGTATGTCTATGCACCCGGGATATTGGGATGGTATCTGATGAAAGACAGATTGGCTCAACTACATTCAATTAC TCATACTGCATCCTTGACTGTTCAACTGCAACATCTATTGACGACGTCTTTAATGACGTTCTCACCCCGGATGCA CGCGCAAACTATCGCCCATCGCGTCAGTGGTTGAACACCGAATCAGTATGTTGATATTTTGAATGCTTTTTGCTA TGGATATCGTTGTATAGACTAATCAAATTAGTCAAGCAAACGTTCTTCCTATAAGAGCCTTGGGGATTACAGCAA ATTAACTCCATTTTCACAACTCGGCAGTAACGTTGTCAATATTGTAGTCGCCAAAAACTTCAATTTTGTCAGCGA TGATATCCAAATGCACATGCTGCAGGTATCTATTCTGACTAGCAGCTCAATGGAGCCGATGCTGATATTTGCGAT AGTTAATGCGATCGAAGGAGTTGGTCACCGAGAACGGGACCCTGAGTGCGCCTGAGGACTTCCTCTTCATTCCTC TTGTGGCACGAGATTTCGATCAGCTCCGGCCATCTTTGAAACTACATCTGGTAAGTATTATTTGTGCGTGTCCGC ATTTTGACTGCTTTACTTTAGCTAATGCCGCAGTAGAATGACAATCTCTTCATTTCTCATTTCCACAGCCCGGAT GTTGGATATACCTATCTTGAAGAGAATGACTGGCTTTCAGATGGACAAATGTCGGCTTCCTCTGTCATTCATAAT TCAAAAGGCAAGCAAACGAAGAGCGCTACAGTCAGTCCGTTGGTAAGTTTGATGATTTAGAATACGAACTGAACA TAGAAATCGAATACTGGGCTCATGAACTTACAGGTGGTGGGTCAACTTCGAGAAACAAGTGCGTCGGTGAGCACG AGCGCGGAAGTCGTTCGATACATCCAGGATATCGTTGTATTTCTGCGGCTCAGTCGCGCTGTTGCAGGTGGTGTG TCTGCGAATGCAAATATTCATTTTTCTCGATTTGCACAGTGAGTTCGAATGTTTCCACCACCACCTATTACATCT AGCTTATCTTACTGGTTCTCCTCTGCAGACTTCTAGCTCCTCTGCATGGTATCGATTATTTGACTCCCTCCATCG TGGCCCTAGCCGCCAGGAAAGTCTTTCGCCATCGCATTATTGTCACTCCTCCTGGCGAAGACCGCAGTCTACAGT ATGGGAGTAATTTACGTGCGGTAGCTGATATTCTCGTTGATGTGACACCGGATTCGATACTAGATGGAGTTCTGG CGCTGGAGCCGCCTTTATGA |