© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4104.t1 |
| Gene name | |
| Location | scaffold_08:10840..11980 |
| Strand | + |
| Gene length (bp) | 1140 |
| Transcript length (bp) | 723 |
| Coding sequence length (bp) | 723 |
| Protein length (aa) | 241 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.5E-11 | 9 | 74 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 169.31 | 102.96 | 235.66 |
| 5d_25C | Five days - 25 degrees Celsius | 242.26 | 149.02 | 335.51 |
| 7d_25C | Seven days - 25 degrees Celsius | 228.98 | 139.77 | 318.20 |
| 10d_25C | Ten days - 25 degrees Celsius | 403.20 | 243.65 | 562.76 |
| 7d_15C | Seven days - 15 degrees Celsius | 217.01 | 132.99 | 301.02 |
| 7d_30C | Seven days - 30 degrees Celsius | 355.58 | 216.35 | 494.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.096746 | no |
| 3d_25C | 7d_25C | 0.177767 | no |
| 3d_25C | 7d_15C | 0.283987 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.855801 | no |
| 5d_25C | 7d_15C | 0.682183 | no |
| 5d_25C | 7d_30C | 0.062802 | no |
| 5d_25C | 10d_25C | 0.009770 | yes |
| 7d_25C | 7d_15C | 0.864392 | no |
| 7d_25C | 7d_30C | 0.030646 | yes |
| 7d_25C | 10d_25C | 0.003197 | yes |
| 7d_15C | 7d_30C | 0.011388 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.649267 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4104.t1 MSSRSGTTLYVTGFGHGTRARDLAYEFERYGRLVRCDIPAPRTPSSRLFAFVEYESRRDADDAYHEMHNKRIGRD DLLKIEWARTPPSASWRFDSGSGRDAPRDAPRDAGRDAGRDRRRDRTPPRRGRSPSPRRSRGGDYSPRRDDRYER DADRTDRDYDRRDRDPDRRDRDHDRRDRDRSRDRSRSPDDRERDGKDDRERRDDDRERREEDRENGPNGEDRKVP LDPMPSAHDELDTAE* |
| Coding | >Pro_DTO377G3_2|g4104.t1 ATGTCTTCTCGCTCTGGAACTACTCTGTATGTTACCGGGTTTGGCCATGGCACCCGTGCTCGCGATCTTGCCTAC GAATTCGAACGTTATGGGCGTCTTGTTCGCTGTGATATCCCTGCCCCGCGCACTCCCTCTAGCCGACTTTTCGCA TTCGTTGAATACGAGAGTCGCCGCGATGCCGATGATGCTTACCACGAGATGCACAACAAGCGTATCGGCCGCGAT GATTTGCTGAAGATTGAGTGGGCACGTACTCCTCCCTCCGCTTCCTGGCGCTTTGACTCTGGCTCTGGCCGTGAC GCTCCCCGTGACGCTCCCCGTGACGCTGGCCGCGATGCTGGCCGTGATCGTCGCCGTGATCGCACTCCTCCTCGC CGTGGTCGTTCTCCATCCCCCCGTCGTAGCCGTGGCGGCGACTATTCCCCCCGCCGAGATGATCGGTACGAACGT GACGCCGACCGTACCGACCGTGACTACGACCGCCGCGACCGTGATCCTGACCGCCGTGACCGTGACCACGATCGA CGTGACCGTGACCGTTCTCGTGACCGCTCTCGCAGCCCTGACGACCGTGAACGCGATGGCAAAGATGACCGGGAA AGACGCGATGATGATCGCGAGCGTCGTGAGGAGGACCGTGAAAACGGCCCCAACGGTGAGGACAGGAAAGTACCC CTGGACCCAATGCCTTCTGCTCATGATGAGCTTGATACTGCTGAGTAG |
| Transcript | >Pro_DTO377G3_2|g4104.t1 ATGTCTTCTCGCTCTGGAACTACTCTGTATGTTACCGGGTTTGGCCATGGCACCCGTGCTCGCGATCTTGCCTAC GAATTCGAACGTTATGGGCGTCTTGTTCGCTGTGATATCCCTGCCCCGCGCACTCCCTCTAGCCGACTTTTCGCA TTCGTTGAATACGAGAGTCGCCGCGATGCCGATGATGCTTACCACGAGATGCACAACAAGCGTATCGGCCGCGAT GATTTGCTGAAGATTGAGTGGGCACGTACTCCTCCCTCCGCTTCCTGGCGCTTTGACTCTGGCTCTGGCCGTGAC GCTCCCCGTGACGCTCCCCGTGACGCTGGCCGCGATGCTGGCCGTGATCGTCGCCGTGATCGCACTCCTCCTCGC CGTGGTCGTTCTCCATCCCCCCGTCGTAGCCGTGGCGGCGACTATTCCCCCCGCCGAGATGATCGGTACGAACGT GACGCCGACCGTACCGACCGTGACTACGACCGCCGCGACCGTGATCCTGACCGCCGTGACCGTGACCACGATCGA CGTGACCGTGACCGTTCTCGTGACCGCTCTCGCAGCCCTGACGACCGTGAACGCGATGGCAAAGATGACCGGGAA AGACGCGATGATGATCGCGAGCGTCGTGAGGAGGACCGTGAAAACGGCCCCAACGGTGAGGACAGGAAAGTACCC CTGGACCCAATGCCTTCTGCTCATGATGAGCTTGATACTGCTGAGTAG |
| Gene | >Pro_DTO377G3_2|g4104.t1 ATGTCTTCTCGCTCTGGAACTACTCTGTATGTTACCGGGTTTGGCCATGGCACCCGTGCTCGCGATCTTGCCTAC GAATTCGAACGGTACGTGTCGCCTATACCTTCGCCTCTACGAACTTCGATTCCCATCCTTCCGACGACCTCCCGA TGAAGACCATTGGCACTAAATGCCTTGGACGACACTCTTCTTTCTACTAGCGTGACATTGGTGTGGAAGCTTGTG TCTACGTTGCCCCGTCTCACTCCTTGGGCAACTGTCAGCTAGTCTTGGTCATTCCTTATCATAATTTCTCTTAAT ACCGATACCTGAAGCTAGCTCAACTGATTTTGGAACTAGTTATGGGCGTCTTGTTCGCTGTGATATCCCTGCCCC GCGCACTCCCTCTAGCCGACTGTGAGTTGAAATGATATCTGAAACCACTTTACCTGTCTAATCTAAGTCGCTTAG TTTCGCATTCGTTGAATACGAGAGTCGCCGCGATGCCGATGATGCTTACCACGAGATGCACAACAAGCGTATCGG CCGCGATGATTTGCTGAAGATTGAGGTAAGCATATCCGCCCCCCCGAAGCTTTGTTAAATATCTTTTAACCTATC TCCAGTGGGCACGTACTCCTCCCTCCGCTTCCTGGCGCTTTGACTCTGGCTCTGGCCGTGACGCTCCCCGTGACG CTCCCCGTGACGCTGGCCGCGATGCTGGCCGTGATCGTCGCCGTGATCGCACTCCTCCTCGCCGTGGTCGTTCTC CATCCCCCCGTCGTAGCCGTGGCGGCGACTATTCCCCCCGCCGAGATGATCGGTACGAACGTGACGCCGACCGTA CCGACCGTGACTACGACCGCCGCGACCGTGATCCTGACCGCCGTGACCGTGACCACGATCGACGTGACCGTGACC GTTCTCGTGACCGCTCTCGCAGCCCTGACGACCGTGAACGCGATGGCAAAGATGACCGGGAAAGACGCGATGATG ATCGCGAGCGTCGTGAGGAGGACCGTGAAAACGGCCCCAACGGTGAGGACAGGAAAGGTCAGTTGCCTCGGAATC TAACCTAGAAAACGTTCTTTTCACTCACATACAGCAGTACCCCTGGACCCAATGCCTTCTGCTCATGATGAGCTT GATACTGCTGAGTAG |