Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4104.t1
Gene name
Locationscaffold_08:10840..11980
Strand+
Gene length (bp)1140
Transcript length (bp)723
Coding sequence length (bp)723
Protein length (aa) 241

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-11 9 74

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 169.31 102.96 235.66
5d_25C Five days - 25 degrees Celsius 242.26 149.02 335.51
7d_25C Seven days - 25 degrees Celsius 228.98 139.77 318.20
10d_25C Ten days - 25 degrees Celsius 403.20 243.65 562.76
7d_15C Seven days - 15 degrees Celsius 217.01 132.99 301.02
7d_30C Seven days - 30 degrees Celsius 355.58 216.35 494.81

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.096746 no
3d_25C 7d_25C 0.177767 no
3d_25C 7d_15C 0.283987 no
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.855801 no
5d_25C 7d_15C 0.682183 no
5d_25C 7d_30C 0.062802 no
5d_25C 10d_25C 0.009770 yes
7d_25C 7d_15C 0.864392 no
7d_25C 7d_30C 0.030646 yes
7d_25C 10d_25C 0.003197 yes
7d_15C 7d_30C 0.011388 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.649267 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4104.t1
MSSRSGTTLYVTGFGHGTRARDLAYEFERYGRLVRCDIPAPRTPSSRLFAFVEYESRRDADDAYHEMHNKRIGRD
DLLKIEWARTPPSASWRFDSGSGRDAPRDAPRDAGRDAGRDRRRDRTPPRRGRSPSPRRSRGGDYSPRRDDRYER
DADRTDRDYDRRDRDPDRRDRDHDRRDRDRSRDRSRSPDDRERDGKDDRERRDDDRERREEDRENGPNGEDRKVP
LDPMPSAHDELDTAE*
Coding >Pro_DTO377G3_2|g4104.t1
ATGTCTTCTCGCTCTGGAACTACTCTGTATGTTACCGGGTTTGGCCATGGCACCCGTGCTCGCGATCTTGCCTAC
GAATTCGAACGTTATGGGCGTCTTGTTCGCTGTGATATCCCTGCCCCGCGCACTCCCTCTAGCCGACTTTTCGCA
TTCGTTGAATACGAGAGTCGCCGCGATGCCGATGATGCTTACCACGAGATGCACAACAAGCGTATCGGCCGCGAT
GATTTGCTGAAGATTGAGTGGGCACGTACTCCTCCCTCCGCTTCCTGGCGCTTTGACTCTGGCTCTGGCCGTGAC
GCTCCCCGTGACGCTCCCCGTGACGCTGGCCGCGATGCTGGCCGTGATCGTCGCCGTGATCGCACTCCTCCTCGC
CGTGGTCGTTCTCCATCCCCCCGTCGTAGCCGTGGCGGCGACTATTCCCCCCGCCGAGATGATCGGTACGAACGT
GACGCCGACCGTACCGACCGTGACTACGACCGCCGCGACCGTGATCCTGACCGCCGTGACCGTGACCACGATCGA
CGTGACCGTGACCGTTCTCGTGACCGCTCTCGCAGCCCTGACGACCGTGAACGCGATGGCAAAGATGACCGGGAA
AGACGCGATGATGATCGCGAGCGTCGTGAGGAGGACCGTGAAAACGGCCCCAACGGTGAGGACAGGAAAGTACCC
CTGGACCCAATGCCTTCTGCTCATGATGAGCTTGATACTGCTGAGTAG
Transcript >Pro_DTO377G3_2|g4104.t1
ATGTCTTCTCGCTCTGGAACTACTCTGTATGTTACCGGGTTTGGCCATGGCACCCGTGCTCGCGATCTTGCCTAC
GAATTCGAACGTTATGGGCGTCTTGTTCGCTGTGATATCCCTGCCCCGCGCACTCCCTCTAGCCGACTTTTCGCA
TTCGTTGAATACGAGAGTCGCCGCGATGCCGATGATGCTTACCACGAGATGCACAACAAGCGTATCGGCCGCGAT
GATTTGCTGAAGATTGAGTGGGCACGTACTCCTCCCTCCGCTTCCTGGCGCTTTGACTCTGGCTCTGGCCGTGAC
GCTCCCCGTGACGCTCCCCGTGACGCTGGCCGCGATGCTGGCCGTGATCGTCGCCGTGATCGCACTCCTCCTCGC
CGTGGTCGTTCTCCATCCCCCCGTCGTAGCCGTGGCGGCGACTATTCCCCCCGCCGAGATGATCGGTACGAACGT
GACGCCGACCGTACCGACCGTGACTACGACCGCCGCGACCGTGATCCTGACCGCCGTGACCGTGACCACGATCGA
CGTGACCGTGACCGTTCTCGTGACCGCTCTCGCAGCCCTGACGACCGTGAACGCGATGGCAAAGATGACCGGGAA
AGACGCGATGATGATCGCGAGCGTCGTGAGGAGGACCGTGAAAACGGCCCCAACGGTGAGGACAGGAAAGTACCC
CTGGACCCAATGCCTTCTGCTCATGATGAGCTTGATACTGCTGAGTAG
Gene >Pro_DTO377G3_2|g4104.t1
ATGTCTTCTCGCTCTGGAACTACTCTGTATGTTACCGGGTTTGGCCATGGCACCCGTGCTCGCGATCTTGCCTAC
GAATTCGAACGGTACGTGTCGCCTATACCTTCGCCTCTACGAACTTCGATTCCCATCCTTCCGACGACCTCCCGA
TGAAGACCATTGGCACTAAATGCCTTGGACGACACTCTTCTTTCTACTAGCGTGACATTGGTGTGGAAGCTTGTG
TCTACGTTGCCCCGTCTCACTCCTTGGGCAACTGTCAGCTAGTCTTGGTCATTCCTTATCATAATTTCTCTTAAT
ACCGATACCTGAAGCTAGCTCAACTGATTTTGGAACTAGTTATGGGCGTCTTGTTCGCTGTGATATCCCTGCCCC
GCGCACTCCCTCTAGCCGACTGTGAGTTGAAATGATATCTGAAACCACTTTACCTGTCTAATCTAAGTCGCTTAG
TTTCGCATTCGTTGAATACGAGAGTCGCCGCGATGCCGATGATGCTTACCACGAGATGCACAACAAGCGTATCGG
CCGCGATGATTTGCTGAAGATTGAGGTAAGCATATCCGCCCCCCCGAAGCTTTGTTAAATATCTTTTAACCTATC
TCCAGTGGGCACGTACTCCTCCCTCCGCTTCCTGGCGCTTTGACTCTGGCTCTGGCCGTGACGCTCCCCGTGACG
CTCCCCGTGACGCTGGCCGCGATGCTGGCCGTGATCGTCGCCGTGATCGCACTCCTCCTCGCCGTGGTCGTTCTC
CATCCCCCCGTCGTAGCCGTGGCGGCGACTATTCCCCCCGCCGAGATGATCGGTACGAACGTGACGCCGACCGTA
CCGACCGTGACTACGACCGCCGCGACCGTGATCCTGACCGCCGTGACCGTGACCACGATCGACGTGACCGTGACC
GTTCTCGTGACCGCTCTCGCAGCCCTGACGACCGTGAACGCGATGGCAAAGATGACCGGGAAAGACGCGATGATG
ATCGCGAGCGTCGTGAGGAGGACCGTGAAAACGGCCCCAACGGTGAGGACAGGAAAGGTCAGTTGCCTCGGAATC
TAACCTAGAAAACGTTCTTTTCACTCACATACAGCAGTACCCCTGGACCCAATGCCTTCTGCTCATGATGAGCTT
GATACTGCTGAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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