© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4082.t1 |
| Gene name | |
| Location | scaffold_07:758784..759690 |
| Strand | + |
| Gene length (bp) | 906 |
| Transcript length (bp) | 648 |
| Coding sequence length (bp) | 648 |
| Protein length (aa) | 216 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05529 | Bap31 | Bap31/Bap29 transmembrane region | 2.6E-51 | 1 | 139 |
| PF18035 | Bap31_Bap29_C | Bap31/Bap29 cytoplasmic coiled-coil domain | 1.0E-13 | 164 | 214 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 44 | 63 | 19 |
| 3 | 108 | 130 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 462.49 | 282.11 | 642.86 |
| 5d_25C | Five days - 25 degrees Celsius | 579.00 | 350.74 | 807.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 553.57 | 332.53 | 774.60 |
| 10d_25C | Ten days - 25 degrees Celsius | 778.30 | 462.66 | 1093.95 |
| 7d_15C | Seven days - 15 degrees Celsius | 716.86 | 428.77 | 1004.94 |
| 7d_30C | Seven days - 30 degrees Celsius | 563.06 | 341.45 | 784.67 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.352031 | no |
| 3d_25C | 7d_25C | 0.477318 | no |
| 3d_25C | 7d_15C | 0.038386 | yes |
| 3d_25C | 7d_30C | 0.431201 | no |
| 3d_25C | 10d_25C | 0.009124 | yes |
| 5d_25C | 7d_25C | 0.893803 | no |
| 5d_25C | 7d_15C | 0.395285 | no |
| 5d_25C | 7d_30C | 0.936154 | no |
| 5d_25C | 10d_25C | 0.202249 | no |
| 7d_25C | 7d_15C | 0.277615 | no |
| 7d_25C | 7d_30C | 0.962341 | no |
| 7d_25C | 10d_25C | 0.127752 | no |
| 7d_15C | 7d_30C | 0.322653 | no |
| 7d_15C | 10d_25C | 0.788570 | no |
| 7d_30C | 10d_25C | 0.156120 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4082.t1 MTLYYSLVFLLLVFEMGVFLALVIPLPHVVKRKLFAFISESPIIAKLQYGLKITFIFILILFIDSVNRVYRVQQE LSAFAKDGPGMGAAHLGTDRMEVQARKFYSQRNMYLCGFTLFLSLILNRTYTMILETLRLEDRVRLIEGDKKAGG KDSARIAEAGSVGEIGRLKEIIATKNRDIETLKKQCEGLTREYHSLGDQISNEKGDKNEKDKKDL* |
| Coding | >Pro_DTO377G3_2|g4082.t1 ATGACTCTCTACTACTCCCTTGTATTCCTCCTTCTGGTGTTCGAGATGGGTGTATTCCTGGCCCTCGTCATCCCT CTCCCTCATGTCGTTAAGCGCAAGCTGTTTGCCTTCATCTCGGAGAGCCCGATCATAGCCAAATTACAATATGGA CTGAAGATTACATTCATCTTCATCCTCATTCTGTTCATCGACTCCGTGAACCGTGTGTACCGTGTGCAGCAGGAG CTGTCCGCCTTCGCCAAGGACGGTCCCGGCATGGGAGCCGCCCACCTCGGTACCGACCGCATGGAGGTCCAGGCC CGCAAGTTCTACTCGCAGCGCAACATGTATCTCTGTGGATTCACTCTGTTCCTCTCCCTGATCCTCAACCGCACC TATACCATGATTCTCGAGACTCTCCGCCTTGAGGACCGCGTCCGTCTCATCGAGGGCGACAAGAAGGCCGGTGGA AAGGACTCAGCCCGTATCGCGGAGGCTGGTTCAGTCGGCGAGATCGGTCGTCTTAAGGAGATCATTGCCACCAAG AACCGGGATATTGAGACTCTCAAGAAGCAGTGTGAGGGTCTGACCCGCGAGTACCACAGCCTGGGTGACCAGATT TCCAACGAAAAGGGTGATAAGAACGAGAAGGACAAGAAAGACCTGTAA |
| Transcript | >Pro_DTO377G3_2|g4082.t1 ATGACTCTCTACTACTCCCTTGTATTCCTCCTTCTGGTGTTCGAGATGGGTGTATTCCTGGCCCTCGTCATCCCT CTCCCTCATGTCGTTAAGCGCAAGCTGTTTGCCTTCATCTCGGAGAGCCCGATCATAGCCAAATTACAATATGGA CTGAAGATTACATTCATCTTCATCCTCATTCTGTTCATCGACTCCGTGAACCGTGTGTACCGTGTGCAGCAGGAG CTGTCCGCCTTCGCCAAGGACGGTCCCGGCATGGGAGCCGCCCACCTCGGTACCGACCGCATGGAGGTCCAGGCC CGCAAGTTCTACTCGCAGCGCAACATGTATCTCTGTGGATTCACTCTGTTCCTCTCCCTGATCCTCAACCGCACC TATACCATGATTCTCGAGACTCTCCGCCTTGAGGACCGCGTCCGTCTCATCGAGGGCGACAAGAAGGCCGGTGGA AAGGACTCAGCCCGTATCGCGGAGGCTGGTTCAGTCGGCGAGATCGGTCGTCTTAAGGAGATCATTGCCACCAAG AACCGGGATATTGAGACTCTCAAGAAGCAGTGTGAGGGTCTGACCCGCGAGTACCACAGCCTGGGTGACCAGATT TCCAACGAAAAGGGTGATAAGAACGAGAAGGACAAGAAAGACCTGTAA |
| Gene | >Pro_DTO377G3_2|g4082.t1 ATGACTCTCTACTACTCCCTTGTAAGCCTGACAAGTTCCTTCTCTAGTTGCTTCTTGTTGTGTTTCTCAAGAAGT TCTCGAGAATCGTTGCAGCCTGATGCCCGAAACTGTCTACCCAGCCCAAGCGTCTCCACCCTATCGATGAACTAA CACAATGCCCTCATATAGGTATTCCTCCTTCTGGTGTTCGAGATGGGTGTATTCCTGGCCCTCGTCATCCCTCTC CCTCATGTCGTTAAGCGCAAGCTGTTTGCCTTCATCTCGGAGAGCCCGATCATAGCCAAATTACAATATGGACTG AAGGTATATTGCCAATTTGAAACCACGTTTCCGGTTACACTGCTAAACTGGCCTCCAGATTACATTCATCTTCAT CCTCATTCTGTTCATCGACTCCGTGAACCGTGTGTACCGTGTGCAGCAGGAGCTGTCCGCCTTCGCCAAGGACGG TCCCGGCATGGGGTAAGTAATCAATCCTCAGGCATTCTAGCAAAATTTCTAACCATTGTTACCAACAGAGCCGCC CACCTCGGTACCGACCGCATGGAGGTCCAGGCCCGCAAGTTCTACTCGCAGCGCAACATGTATCTCTGTGGATTC ACTCTGTTCCTCTCCCTGATCCTCAACCGCACCTATACCATGATTCTCGAGACTCTCCGCCTTGAGGACCGCGTC CGTCTCATCGAGGGCGACAAGAAGGCCGGTGGAAAGGACTCAGCCCGTATCGCGGAGGCTGGTTCAGTCGGCGAG ATCGGTCGTCTTAAGGAGATCATTGCCACCAAGAACCGGGATATTGAGACTCTCAAGAAGCAGTGTGAGGGTCTG ACCCGCGAGTACCACAGCCTGGGTGACCAGATTTCCAACGAAAAGGGTGATAAGAACGAGAAGGACAAGAAAGAC CTGTAA |