Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g407.t1
Gene name
Locationscaffold_01:1034629..1036112
Strand-
Gene length (bp)1483
Transcript length (bp)1260
Coding sequence length (bp)1260
Protein length (aa) 420

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12220 U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 1.0E-24 3 93
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-15 104 177

GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g407.t1
MTDKLPPPLLALFQPRPPLRYLPPGDRAPDDCQKSTISGVAQFLADAKTFADEVPYNATESGVQRKLREKVEKKE
QLEKQIADGLQNYNPDKDPQARGDPFRTIFVSRLSYEAKEADLEREFGRFGPIERITIIKDTVSDKKKKPHRGYA
FVVFEREKDMKAAYKDTENFSIKGRPVVVDVERGRTTKGWKPRRLGGGLGGRGYTKVAQLPRGGPGFNAPSGPGG
YGGGFRGGFGGRGGGGGFRGGGFRGGNDRFGGPRGGIGYQGNRGGFGGQAPPNAPSGPGGGRSGGFRGGSFGGDR
GDRGGGAGGRFDRGATGSNSEPVRPRDSYADRDRRDYDRDDRYRDRDRDRMGDRGTGDRNGDRFRDRDRERGERG
DRYGGGGRDGGRDGGRDGGREDYGRKRNREDEPGHDDPRSRRRY*
Coding >Pro_DTO377G3_2|g407.t1
ATGACGGATAAGCTACCCCCGCCACTTCTGGCGCTGTTCCAGCCGCGTCCACCCCTTCGATATCTGCCTCCAGGC
GATCGCGCACCAGATGACTGCCAGAAGAGCACTATCTCTGGGGTTGCCCAGTTCCTTGCCGATGCTAAAACTTTT
GCCGATGAAGTTCCCTACAACGCAACTGAAAGCGGGGTGCAGCGCAAATTGCGCGAGAAAGTCGAGAAGAAAGAG
CAGTTAGAGAAGCAGATAGCGGATGGACTGCAAAACTACAATCCGGATAAAGATCCTCAAGCTCGAGGCGACCCA
TTCAGGACTATCTTTGTCTCACGCCTCAGTTATGAAGCCAAAGAAGCTGACCTGGAACGAGAGTTTGGCCGATTT
GGTCCCATTGAAAGAATTACCATCATCAAAGATACAGTATCAGACAAGAAAAAGAAACCCCACAGAGGCTATGCA
TTTGTCGTGTTCGAGCGCGAGAAGGATATGAAAGCGGCCTACAAAGACACAGAGAACTTCAGTATCAAGGGACGA
CCAGTTGTGGTAGATGTCGAGCGTGGCCGCACCACCAAGGGGTGGAAGCCCCGTCGCCTTGGTGGCGGTCTCGGA
GGGCGCGGATACACCAAGGTTGCGCAACTCCCCCGTGGTGGACCTGGTTTCAACGCACCATCTGGACCGGGTGGG
TATGGAGGCGGATTCCGCGGAGGCTTCGGGGGCAGAGGTGGAGGTGGTGGTTTCCGTGGTGGAGGTTTCCGCGGT
GGCAATGATCGCTTCGGTGGTCCTCGCGGTGGTATCGGATACCAGGGCAACCGTGGCGGCTTCGGTGGACAGGCT
CCCCCTAACGCGCCCTCCGGCCCTGGCGGTGGACGTAGCGGAGGTTTCAGAGGTGGTAGCTTCGGTGGTGATCGT
GGTGACCGCGGTGGTGGCGCCGGTGGCAGATTCGACCGTGGTGCAACTGGCAGCAATTCGGAGCCTGTGCGGCCT
CGAGATAGCTACGCTGACCGTGACCGCCGCGACTATGACCGTGACGACCGTTACAGAGATCGTGATCGTGACCGC
ATGGGAGATCGAGGCACTGGAGACCGAAACGGAGACCGATTCCGCGACCGGGACCGTGAACGTGGTGAACGTGGT
GACAGGTATGGCGGCGGTGGCCGTGATGGTGGTCGTGACGGCGGTCGTGACGGCGGCCGGGAGGATTATGGACGC
AAGCGAAACCGTGAGGATGAACCTGGACACGATGATCCTCGTTCCAGGAGAAGGTATTAA
Transcript >Pro_DTO377G3_2|g407.t1
ATGACGGATAAGCTACCCCCGCCACTTCTGGCGCTGTTCCAGCCGCGTCCACCCCTTCGATATCTGCCTCCAGGC
GATCGCGCACCAGATGACTGCCAGAAGAGCACTATCTCTGGGGTTGCCCAGTTCCTTGCCGATGCTAAAACTTTT
GCCGATGAAGTTCCCTACAACGCAACTGAAAGCGGGGTGCAGCGCAAATTGCGCGAGAAAGTCGAGAAGAAAGAG
CAGTTAGAGAAGCAGATAGCGGATGGACTGCAAAACTACAATCCGGATAAAGATCCTCAAGCTCGAGGCGACCCA
TTCAGGACTATCTTTGTCTCACGCCTCAGTTATGAAGCCAAAGAAGCTGACCTGGAACGAGAGTTTGGCCGATTT
GGTCCCATTGAAAGAATTACCATCATCAAAGATACAGTATCAGACAAGAAAAAGAAACCCCACAGAGGCTATGCA
TTTGTCGTGTTCGAGCGCGAGAAGGATATGAAAGCGGCCTACAAAGACACAGAGAACTTCAGTATCAAGGGACGA
CCAGTTGTGGTAGATGTCGAGCGTGGCCGCACCACCAAGGGGTGGAAGCCCCGTCGCCTTGGTGGCGGTCTCGGA
GGGCGCGGATACACCAAGGTTGCGCAACTCCCCCGTGGTGGACCTGGTTTCAACGCACCATCTGGACCGGGTGGG
TATGGAGGCGGATTCCGCGGAGGCTTCGGGGGCAGAGGTGGAGGTGGTGGTTTCCGTGGTGGAGGTTTCCGCGGT
GGCAATGATCGCTTCGGTGGTCCTCGCGGTGGTATCGGATACCAGGGCAACCGTGGCGGCTTCGGTGGACAGGCT
CCCCCTAACGCGCCCTCCGGCCCTGGCGGTGGACGTAGCGGAGGTTTCAGAGGTGGTAGCTTCGGTGGTGATCGT
GGTGACCGCGGTGGTGGCGCCGGTGGCAGATTCGACCGTGGTGCAACTGGCAGCAATTCGGAGCCTGTGCGGCCT
CGAGATAGCTACGCTGACCGTGACCGCCGCGACTATGACCGTGACGACCGTTACAGAGATCGTGATCGTGACCGC
ATGGGAGATCGAGGCACTGGAGACCGAAACGGAGACCGATTCCGCGACCGGGACCGTGAACGTGGTGAACGTGGT
GACAGGTATGGCGGCGGTGGCCGTGATGGTGGTCGTGACGGCGGTCGTGACGGCGGCCGGGAGGATTATGGACGC
AAGCGAAACCGTGAGGATGAACCTGGACACGATGATCCTCGTTCCAGGAGAAGGTATTAA
Gene >Pro_DTO377G3_2|g407.t1
ATGACGGATAAGCTACCCCCGCCACTTCTGGCGCTGTTCCAGCCGCGTCCACCCCTTCGATATCTGCCTCCAGGC
GATCGCGCACCAGATGACTGCCAGAAGAGCACTATCTCTGGGGTTGCCCAGTTCCTTGCCGATGCTAAAACTTTT
GCCGATGAAGTTCCCTACAACGCAACTGAAAGCGGGGTGCAGCGCAAATTGCGCGAGAAAGTCGAGAAGAAAGAG
CAGTTAGAGAAGCAGATAGCGGATGGACTGCAAAACTGTACGCTTTATCCTCTTTTCACATTTCACATTATTTCA
AGAGGCTAACGTGGCTATGTCTTACAGACAATCCGGATAAAGATCCTCAAGCTCGAGGCGACCCATTCAGGACTA
TCTTTGTCTCACGCCTCAGTTATGAAGCCAAAGAAGCTGACCTGGAACGAGAGTTTGGCCGATTTGGTCCCATTG
AAAGAGTATGTCTTGTTTTCCTTATCCCTTGTGAATATAAACAGCTCTAACTTTGTGATTCCAGATTACCATCAT
CAAAGATACAGTATCAGACAAGAAAAAGAAACCCCACAGAGGCTATGCATTTGTCGTGTTCGAGCGCGAGAAGGA
TATGAAAGGTATCACAACCATGGCAATTTACTTGGCATCCAACCCACCCGTTTAATTCGTCTTGCGGTAAGAAAT
GTTGCTGACCCCAGTTCCTTCATCAATATCAGCGGCCTACAAAGACACAGAGAACTTCAGTATCAAGGGACGACC
AGTTGTGGTAGATGTCGAGCGTGGCCGCACCACCAAGGGGTGGAAGCCCCGTCGCCTTGGTGGCGGTCTCGGAGG
GCGCGGATACACCAAGGTTGCGCAACTCCCCCGTGGTGGACCTGGTTTCAACGCACCATCTGGACCGGGTGGGTA
TGGAGGCGGATTCCGCGGAGGCTTCGGGGGCAGAGGTGGAGGTGGTGGTTTCCGTGGTGGAGGTTTCCGCGGTGG
CAATGATCGCTTCGGTGGTCCTCGCGGTGGTATCGGATACCAGGGCAACCGTGGCGGCTTCGGTGGACAGGCTCC
CCCTAACGCGCCCTCCGGCCCTGGCGGTGGACGTAGCGGAGGTTTCAGAGGTGGTAGCTTCGGTGGTGATCGTGG
TGACCGCGGTGGTGGCGCCGGTGGCAGATTCGACCGTGGTGCAACTGGCAGCAATTCGGAGCCTGTGCGGCCTCG
AGATAGCTACGCTGACCGTGACCGCCGCGACTATGACCGTGACGACCGTTACAGAGATCGTGATCGTGACCGCAT
GGGAGATCGAGGCACTGGAGACCGAAACGGAGACCGATTCCGCGACCGGGACCGTGAACGTGGTGAACGTGGTGA
CAGGTATGGCGGCGGTGGCCGTGATGGTGGTCGTGACGGCGGTCGTGACGGCGGCCGGGAGGATTATGGACGCAA
GCGAAACCGTGAGGATGAACCTGGACACGATGATCCTCGTTCCAGGAGAAGGTATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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