Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4057.t1
Gene name
Locationscaffold_07:655085..655922
Strand+
Gene length (bp)837
Transcript length (bp)837
Coding sequence length (bp)837
Protein length (aa) 279

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 4.6E-02 70 115

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 26 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.19 0.0 0.57
5d_25C Five days - 25 degrees Celsius 0.07 0.0 0.25
7d_25C Seven days - 25 degrees Celsius 0.22 0.0 0.66
10d_25C Ten days - 25 degrees Celsius 0.05 0.0 0.23
7d_15C Seven days - 15 degrees Celsius 0.12 0.0 0.37
7d_30C Seven days - 30 degrees Celsius 0.03 0.0 0.21

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.0 no
3d_25C 7d_25C 1.0 no
3d_25C 7d_15C 1.0 no
3d_25C 7d_30C 1.0 no
3d_25C 10d_25C 1.0 no
5d_25C 7d_25C 1.0 no
5d_25C 7d_15C 1.0 no
5d_25C 7d_30C 1.0 no
5d_25C 10d_25C 1.0 no
7d_25C 7d_15C 1.0 no
7d_25C 7d_30C 1.0 no
7d_25C 10d_25C 1.0 no
7d_15C 7d_30C 1.0 no
7d_15C 10d_25C 1.0 no
7d_30C 10d_25C 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4057.t1
MPDNELYSYCYTEHLQMMQCTPYSAYDDYYQTVLQAINKRYRLNAPTTVLEIPRNTPEKETKFCGSDNFYTTVDG
DTCTSIAEDTSISSAALYMGNQNQILDCSSLSSGLKFCLPLTCEKTYSIQPSDNCSDIEYAYSLKDRDVRKYNPW
VSYDCDNLQPASKIYGTAICLSPQGGMHNGSSTGGGVAPSQSNGYVYSKVEPPANATLATGTTRNCGKWYEAKSG
DSCVGICGQYSITHAVFTMVNPSLDPGKCSDSLKAGSVYCIAPTYSWNDTEST*
Coding >Pro_DTO377G3_2|g4057.t1
ATGCCTGATAACGAGCTATACTCTTACTGCTATACCGAACACCTTCAAATGATGCAATGTACCCCTTACTCTGCG
TACGACGACTACTATCAGACGGTCCTACAAGCAATCAATAAGCGTTACAGATTAAATGCCCCGACCACAGTCCTG
GAAATCCCTCGCAATACCCCAGAAAAGGAAACTAAATTCTGCGGATCGGATAATTTCTACACCACCGTGGACGGC
GACACTTGCACATCGATCGCCGAAGACACGAGCATTTCTTCAGCGGCATTGTACATGGGAAATCAAAATCAGATC
CTTGACTGCAGTTCCCTCTCTTCGGGACTCAAATTCTGCCTTCCCCTAACCTGTGAGAAGACATATTCCATCCAA
CCCAGCGACAATTGTTCAGATATCGAGTACGCGTACTCCCTGAAAGATCGTGATGTACGCAAATACAACCCATGG
GTCTCATACGACTGCGACAATCTACAGCCAGCAAGCAAGATCTACGGTACAGCCATTTGTCTCTCTCCACAGGGC
GGCATGCACAATGGAAGCAGCACTGGTGGTGGCGTTGCTCCCTCTCAATCGAATGGATATGTGTATAGCAAGGTC
GAGCCACCTGCAAATGCGACACTGGCGACAGGAACAACAAGGAATTGTGGCAAATGGTACGAGGCCAAGAGTGGA
GATAGTTGTGTGGGTATATGTGGTCAGTATAGTATCACACATGCGGTCTTCACGATGGTAAACCCTTCTTTGGAC
CCGGGAAAATGCTCAGATAGCTTGAAGGCTGGAAGTGTTTACTGTATTGCGCCAACCTACAGCTGGAATGACACT
GAGAGTACATGA
Transcript >Pro_DTO377G3_2|g4057.t1
ATGCCTGATAACGAGCTATACTCTTACTGCTATACCGAACACCTTCAAATGATGCAATGTACCCCTTACTCTGCG
TACGACGACTACTATCAGACGGTCCTACAAGCAATCAATAAGCGTTACAGATTAAATGCCCCGACCACAGTCCTG
GAAATCCCTCGCAATACCCCAGAAAAGGAAACTAAATTCTGCGGATCGGATAATTTCTACACCACCGTGGACGGC
GACACTTGCACATCGATCGCCGAAGACACGAGCATTTCTTCAGCGGCATTGTACATGGGAAATCAAAATCAGATC
CTTGACTGCAGTTCCCTCTCTTCGGGACTCAAATTCTGCCTTCCCCTAACCTGTGAGAAGACATATTCCATCCAA
CCCAGCGACAATTGTTCAGATATCGAGTACGCGTACTCCCTGAAAGATCGTGATGTACGCAAATACAACCCATGG
GTCTCATACGACTGCGACAATCTACAGCCAGCAAGCAAGATCTACGGTACAGCCATTTGTCTCTCTCCACAGGGC
GGCATGCACAATGGAAGCAGCACTGGTGGTGGCGTTGCTCCCTCTCAATCGAATGGATATGTGTATAGCAAGGTC
GAGCCACCTGCAAATGCGACACTGGCGACAGGAACAACAAGGAATTGTGGCAAATGGTACGAGGCCAAGAGTGGA
GATAGTTGTGTGGGTATATGTGGTCAGTATAGTATCACACATGCGGTCTTCACGATGGTAAACCCTTCTTTGGAC
CCGGGAAAATGCTCAGATAGCTTGAAGGCTGGAAGTGTTTACTGTATTGCGCCAACCTACAGCTGGAATGACACT
GAGAGTACATGA
Gene >Pro_DTO377G3_2|g4057.t1
ATGCCTGATAACGAGCTATACTCTTACTGCTATACCGAACACCTTCAAATGATGCAATGTACCCCTTACTCTGCG
TACGACGACTACTATCAGACGGTCCTACAAGCAATCAATAAGCGTTACAGATTAAATGCCCCGACCACAGTCCTG
GAAATCCCTCGCAATACCCCAGAAAAGGAAACTAAATTCTGCGGATCGGATAATTTCTACACCACCGTGGACGGC
GACACTTGCACATCGATCGCCGAAGACACGAGCATTTCTTCAGCGGCATTGTACATGGGAAATCAAAATCAGATC
CTTGACTGCAGTTCCCTCTCTTCGGGACTCAAATTCTGCCTTCCCCTAACCTGTGAGAAGACATATTCCATCCAA
CCCAGCGACAATTGTTCAGATATCGAGTACGCGTACTCCCTGAAAGATCGTGATGTACGCAAATACAACCCATGG
GTCTCATACGACTGCGACAATCTACAGCCAGCAAGCAAGATCTACGGTACAGCCATTTGTCTCTCTCCACAGGGC
GGCATGCACAATGGAAGCAGCACTGGTGGTGGCGTTGCTCCCTCTCAATCGAATGGATATGTGTATAGCAAGGTC
GAGCCACCTGCAAATGCGACACTGGCGACAGGAACAACAAGGAATTGTGGCAAATGGTACGAGGCCAAGAGTGGA
GATAGTTGTGTGGGTATATGTGGTCAGTATAGTATCACACATGCGGTCTTCACGATGGTAAACCCTTCTTTGGAC
CCGGGAAAATGCTCAGATAGCTTGAAGGCTGGAAGTGTTTACTGTATTGCGCCAACCTACAGCTGGAATGACACT
GAGAGTACATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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