© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4017.t1 |
| Gene name | |
| Location | scaffold_07:547276..548468 |
| Strand | + |
| Gene length (bp) | 1192 |
| Transcript length (bp) | 1140 |
| Coding sequence length (bp) | 1140 |
| Protein length (aa) | 380 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain | 3.6E-20 | 10 | 83 |
| PF04116 | FA_hydroxylase | Fatty acid hydroxylase | 9.3E-13 | 224 | 366 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0008610 | lipid biosynthetic process | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0043167 | ion binding | No |
| GO:0009058 | biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0008152 | metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0005488 | binding | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0046914 | transition metal ion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 191 | 213 | 22 |
| 2 | 220 | 242 | 22 |
| 3 | 296 | 318 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 65.17 | 38.85 | 91.49 |
| 5d_25C | Five days - 25 degrees Celsius | 56.80 | 33.48 | 80.12 |
| 7d_25C | Seven days - 25 degrees Celsius | 78.78 | 47.57 | 109.99 |
| 10d_25C | Ten days - 25 degrees Celsius | 85.44 | 51.84 | 119.04 |
| 7d_15C | Seven days - 15 degrees Celsius | 48.34 | 27.69 | 68.98 |
| 7d_30C | Seven days - 30 degrees Celsius | 59.28 | 34.97 | 83.59 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.626489 | no |
| 3d_25C | 7d_25C | 0.452492 | no |
| 3d_25C | 7d_15C | 0.218512 | no |
| 3d_25C | 7d_30C | 0.753553 | no |
| 3d_25C | 10d_25C | 0.242758 | no |
| 5d_25C | 7d_25C | 0.146306 | no |
| 5d_25C | 7d_15C | 0.574597 | no |
| 5d_25C | 7d_30C | 0.900255 | no |
| 5d_25C | 10d_25C | 0.061291 | no |
| 7d_25C | 7d_15C | 0.024417 | yes |
| 7d_25C | 7d_30C | 0.225973 | no |
| 7d_25C | 10d_25C | 0.784258 | no |
| 7d_15C | 7d_30C | 0.447286 | no |
| 7d_15C | 10d_25C | 0.006371 | yes |
| 7d_30C | 10d_25C | 0.093107 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4017.t1 MPGRVLPTLTSADVQSHNTDKSCYITVGRNVYDVTDFLDAHPGGGDLILEYAGQDVTDILKDEVSHEHSDAAYEI LDECHIGFVSDVSTPGKTTTTTTTVIETVTETESGPIYTTTGMSREEDLSIDTDYSQDYKTHKFLDLNKPLLLQL WYSNFSKEFYLEQIHRPRHYRGGESAPLFGNFLEPLSKTAWYIVPTIWLPCVAYGITVGAIGLGNSVVAASYFTV GVCLWTLIEYLLHRFLFHIDHYLPDNRVGITLHFLLHGIHHYLPMDKYRLVMPPTLFVVLAAPFWKLAHAVFYYN WYAATSVFSGGIFGYICYDLTHYFLHHRSLPSYYKELKKYHLQHHFADYENGFGVTSRFWDRVFGTELVSPAPKG VKAQ* |
| Coding | >Pro_DTO377G3_2|g4017.t1 ATGCCTGGGAGAGTTCTGCCAACGTTGACCTCCGCCGACGTCCAATCCCACAACACCGACAAGTCATGCTACATC ACCGTGGGGCGTAACGTTTACGATGTCACCGATTTCCTCGACGCGCACCCCGGTGGTGGCGATCTGATCCTGGAG TATGCCGGGCAGGATGTGACGGATATCCTGAAAGATGAGGTCTCCCACGAGCACAGCGACGCTGCCTATGAAATT TTGGATGAGTGCCACATTGGCTTTGTCTCCGATGTCTCGACACCTGGCAAAACCACGACAACCACGACCACTGTC ATCGAAACGGTGACCGAAACCGAGTCCGGACCCATTTACACAACTACTGGAATGTCTCGGGAGGAGGACCTGTCG ATAGACACCGACTATAGCCAGGACTACAAAACCCATAAGTTCCTGGACTTAAACAAGCCGCTTCTGCTGCAGCTG TGGTACAGCAACTTCTCCAAGGAGTTCTACTTGGAGCAGATTCATCGGCCTCGTCACTACCGGGGAGGGGAGTCC GCTCCTTTGTTCGGCAACTTCCTGGAGCCTCTCAGCAAAACCGCATGGTACATCGTGCCAACTATTTGGTTGCCA TGTGTTGCCTACGGAATAACAGTGGGGGCTATCGGGCTGGGTAACTCCGTCGTTGCTGCCTCCTACTTCACCGTT GGCGTGTGCCTCTGGACTCTGATCGAGTATCTGTTGCACCGATTCCTCTTCCACATTGACCACTATCTTCCGGAT AACCGTGTCGGTATTACCCTGCACTTCCTGCTCCACGGTATCCACCACTATCTCCCGATGGACAAGTATCGTCTC GTTATGCCACCGACACTATTCGTGGTACTAGCCGCTCCTTTCTGGAAGCTGGCACACGCAGTATTCTATTACAAC TGGTATGCGGCTACGTCGGTATTCTCCGGCGGCATCTTCGGGTATATTTGCTATGATCTCACCCATTATTTCCTG CACCACCGCAGTCTTCCTTCATACTACAAGGAGCTCAAGAAGTACCACCTTCAGCACCATTTTGCCGATTACGAG AATGGCTTTGGCGTGACCAGCCGATTCTGGGATCGAGTCTTTGGCACCGAGTTGGTGTCTCCCGCCCCGAAGGGC GTCAAGGCTCAGTGA |
| Transcript | >Pro_DTO377G3_2|g4017.t1 ATGCCTGGGAGAGTTCTGCCAACGTTGACCTCCGCCGACGTCCAATCCCACAACACCGACAAGTCATGCTACATC ACCGTGGGGCGTAACGTTTACGATGTCACCGATTTCCTCGACGCGCACCCCGGTGGTGGCGATCTGATCCTGGAG TATGCCGGGCAGGATGTGACGGATATCCTGAAAGATGAGGTCTCCCACGAGCACAGCGACGCTGCCTATGAAATT TTGGATGAGTGCCACATTGGCTTTGTCTCCGATGTCTCGACACCTGGCAAAACCACGACAACCACGACCACTGTC ATCGAAACGGTGACCGAAACCGAGTCCGGACCCATTTACACAACTACTGGAATGTCTCGGGAGGAGGACCTGTCG ATAGACACCGACTATAGCCAGGACTACAAAACCCATAAGTTCCTGGACTTAAACAAGCCGCTTCTGCTGCAGCTG TGGTACAGCAACTTCTCCAAGGAGTTCTACTTGGAGCAGATTCATCGGCCTCGTCACTACCGGGGAGGGGAGTCC GCTCCTTTGTTCGGCAACTTCCTGGAGCCTCTCAGCAAAACCGCATGGTACATCGTGCCAACTATTTGGTTGCCA TGTGTTGCCTACGGAATAACAGTGGGGGCTATCGGGCTGGGTAACTCCGTCGTTGCTGCCTCCTACTTCACCGTT GGCGTGTGCCTCTGGACTCTGATCGAGTATCTGTTGCACCGATTCCTCTTCCACATTGACCACTATCTTCCGGAT AACCGTGTCGGTATTACCCTGCACTTCCTGCTCCACGGTATCCACCACTATCTCCCGATGGACAAGTATCGTCTC GTTATGCCACCGACACTATTCGTGGTACTAGCCGCTCCTTTCTGGAAGCTGGCACACGCAGTATTCTATTACAAC TGGTATGCGGCTACGTCGGTATTCTCCGGCGGCATCTTCGGGTATATTTGCTATGATCTCACCCATTATTTCCTG CACCACCGCAGTCTTCCTTCATACTACAAGGAGCTCAAGAAGTACCACCTTCAGCACCATTTTGCCGATTACGAG AATGGCTTTGGCGTGACCAGCCGATTCTGGGATCGAGTCTTTGGCACCGAGTTGGTGTCTCCCGCCCCGAAGGGC GTCAAGGCTCAGTGA |
| Gene | >Pro_DTO377G3_2|g4017.t1 ATGCCTGGGAGAGTTCTGCCAACGTTGACCTCCGCCGACGTCCAATCCCACAACACCGACAAGTCATGCTACATC ACCGTGGGGCGTAACGTTTACGATGTCACCGATTTCCTCGACGCGCACCCCGGTGGTGGCGATCTGATCCTGGAG TATGCCGGGCAGGATGTGACGGATATCCTGAAAGATGAGGTCTCCCACGAGCACAGCGACGCTGCCTATGAAATT TTGGATGAGTGCCACATTGGCTTTGTCTCCGATGTCTCGACACCTGGCAAAACCACGACAACCACGACCACTGTC ATCGAAACGGTGACCGAAACCGAGTCCGGACCCATTTACACAACTACTGGAATGTCTCGGGAGGAGGACCTGTCG ATAGACACCGACTATAGCCAGGACTACAAAACCCATAAGTTCCTGGACTTAAACAAGCCGCTTCTGCTGCAGCTG TGGTACAGCAACTTCTCCAAGGAGTTCTACTTGGAGCAGATTCATCGGCCTCGTCACTACCGGGGAGGGGAGTCC GCTCCTTTGTTCGGCAACTTCCTGGAGCCTCTCAGCAAAACCGCATGGTACATCGTGCCAACTATTTGGTTGCCA TGTGTTGCCTACGGAATAACAGTGGGGGCTATCGGGCTGGGTAACTCCGTCGTTGCTGCCTCCTACTTCACCGTT GGCGTGTGCCTCTGGACTCTGATCGAGTATCTGTTGCACCGATTCCTCTTCCACATTGACCACTATCTTCCGGAT AACCGTGTCGGTATTACCCTGCACTTCCTGCTCCACGGTATCCACCACTATCTCCCGATGGACAAGTATCGTCTC GTTATGCCACCGACACTATTCGTGGTACTAGCCGCTCCTTTCTGGAAGCTGGCACACGCAGTATTCTATTACAAC TGGTATGCGGCTACGTCGGTATTCTCCGGCGGCATCTTCGGGTATATTTGCTATGATCTCACCCATTATTTCCTG CACCACCGCAGGTAAGTTGAACTCCATCTTTGATACAATGAAACCATGCTAACATCCATATAGTCTTCCTTCATA CTACAAGGAGCTCAAGAAGTACCACCTTCAGCACCATTTTGCCGATTACGAGAATGGCTTTGGCGTGACCAGCCG ATTCTGGGATCGAGTCTTTGGCACCGAGTTGGTGTCTCCCGCCCCGAAGGGCGTCAAGGCTCAGTGA |