© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4011.t1 |
| Gene name | |
| Location | scaffold_07:528625..530218 |
| Strand | - |
| Gene length (bp) | 1593 |
| Transcript length (bp) | 1170 |
| Coding sequence length (bp) | 1170 |
| Protein length (aa) | 390 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05653 | Mg_trans_NIPA | Magnesium transporter NIPA | 1.7E-103 | 4 | 293 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015095 | magnesium ion transmembrane transporter activity | Yes |
| GO:0015693 | magnesium ion transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0030001 | metal ion transport | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| 2 | 71 | 93 | 22 |
| 3 | 100 | 122 | 22 |
| 4 | 137 | 159 | 22 |
| 5 | 172 | 194 | 22 |
| 6 | 207 | 229 | 22 |
| 7 | 242 | 264 | 22 |
| 8 | 269 | 291 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4011.t1 MLPDKYVGLILAIVSTMAIGTSFVITKKGLMHASERHGFEGEGFSYLKSPVWWGGIVTLALGEVANFAAYAFAPA ILVTPLGALSVLIGAVLSSYFLNEILGVLGKLGCALCLLGSVVIVLHAPPDKQVETVDEILGYAVQPGFLLYCVA VAIFSTLMIYRVAPVYGKKNPLVYISICSTVGSVSVMSVKAFGIAVKLTIGGNNQFVHASTYVFAIVTGFCILTQ MNYFNKALNSFSTSIVNPLYYVTFTTATLCASFILFKGFNTTDAVNTISLLCGFLIIFTGVYLLNLSRHDPDGHS MVNSKLDEDGVPTDGMTSFQTRRSMQSRRSESSAYFNGTSDREGLIHAYDVENGIGMNNLTEESNGEPGPTFPRT DTQTALHTKRNSQL* |
| Coding | >Pro_DTO377G3_2|g4011.t1 ATGCTTCCAGATAAATATGTCGGGCTTATTTTAGCCATTGTATCGACCATGGCCATCGGCACCAGTTTTGTGATC ACCAAAAAGGGCTTGATGCACGCCTCCGAACGACATGGATTTGAGGGCGAAGGTTTCTCATATTTGAAGAGTCCC GTGTGGTGGGGTGGTATAGTGACACTGGCTCTTGGCGAAGTCGCAAACTTCGCTGCCTACGCTTTTGCGCCTGCC ATCCTGGTTACGCCCTTGGGTGCGCTGAGTGTTCTCATCGGTGCGGTCTTGAGTTCGTACTTCCTCAACGAGATA CTTGGTGTATTAGGAAAACTAGGCTGTGCGCTGTGCTTGCTGGGATCGGTCGTCATCGTTCTCCATGCGCCTCCA GACAAGCAGGTGGAGACCGTCGATGAGATTCTTGGATATGCGGTCCAGCCAGGATTCCTTCTTTACTGTGTCGCA GTTGCGATCTTCTCGACTCTGATGATCTACCGGGTTGCGCCGGTCTATGGCAAGAAGAACCCGCTCGTCTACATC TCGATTTGCTCCACTGTTGGATCGGTCTCGGTCATGTCAGTCAAGGCCTTTGGCATTGCAGTGAAATTGACCATT GGCGGCAACAACCAATTTGTCCACGCGTCCACCTACGTCTTTGCCATTGTAACCGGATTTTGCATTCTGACGCAG ATGAACTACTTCAACAAGGCATTGAACTCTTTCTCGACTTCGATCGTGAACCCACTTTATTATGTCACCTTCACA ACCGCGACTCTCTGTGCCTCGTTTATTCTCTTCAAGGGATTCAACACCACTGACGCCGTCAACACCATATCTTTA CTCTGTGGATTCCTCATCATCTTCACCGGCGTGTACCTCCTGAACCTCTCACGACATGACCCGGATGGACACAGC ATGGTGAATTCAAAACTTGACGAGGATGGAGTGCCAACAGACGGTATGACGAGTTTCCAGACCCGTCGCTCAATG CAGTCCCGCCGAAGCGAGTCGAGTGCATATTTCAATGGCACCAGCGACCGCGAAGGCCTCATACACGCATACGAT GTGGAGAACGGGATCGGCATGAACAACTTGACCGAAGAAAGTAATGGGGAGCCAGGCCCGACTTTCCCGCGGACG GATACGCAGACTGCACTGCACACGAAGCGGAACAGTCAGCTCTGA |
| Transcript | >Pro_DTO377G3_2|g4011.t1 ATGCTTCCAGATAAATATGTCGGGCTTATTTTAGCCATTGTATCGACCATGGCCATCGGCACCAGTTTTGTGATC ACCAAAAAGGGCTTGATGCACGCCTCCGAACGACATGGATTTGAGGGCGAAGGTTTCTCATATTTGAAGAGTCCC GTGTGGTGGGGTGGTATAGTGACACTGGCTCTTGGCGAAGTCGCAAACTTCGCTGCCTACGCTTTTGCGCCTGCC ATCCTGGTTACGCCCTTGGGTGCGCTGAGTGTTCTCATCGGTGCGGTCTTGAGTTCGTACTTCCTCAACGAGATA CTTGGTGTATTAGGAAAACTAGGCTGTGCGCTGTGCTTGCTGGGATCGGTCGTCATCGTTCTCCATGCGCCTCCA GACAAGCAGGTGGAGACCGTCGATGAGATTCTTGGATATGCGGTCCAGCCAGGATTCCTTCTTTACTGTGTCGCA GTTGCGATCTTCTCGACTCTGATGATCTACCGGGTTGCGCCGGTCTATGGCAAGAAGAACCCGCTCGTCTACATC TCGATTTGCTCCACTGTTGGATCGGTCTCGGTCATGTCAGTCAAGGCCTTTGGCATTGCAGTGAAATTGACCATT GGCGGCAACAACCAATTTGTCCACGCGTCCACCTACGTCTTTGCCATTGTAACCGGATTTTGCATTCTGACGCAG ATGAACTACTTCAACAAGGCATTGAACTCTTTCTCGACTTCGATCGTGAACCCACTTTATTATGTCACCTTCACA ACCGCGACTCTCTGTGCCTCGTTTATTCTCTTCAAGGGATTCAACACCACTGACGCCGTCAACACCATATCTTTA CTCTGTGGATTCCTCATCATCTTCACCGGCGTGTACCTCCTGAACCTCTCACGACATGACCCGGATGGACACAGC ATGGTGAATTCAAAACTTGACGAGGATGGAGTGCCAACAGACGGTATGACGAGTTTCCAGACCCGTCGCTCAATG CAGTCCCGCCGAAGCGAGTCGAGTGCATATTTCAATGGCACCAGCGACCGCGAAGGCCTCATACACGCATACGAT GTGGAGAACGGGATCGGCATGAACAACTTGACCGAAGAAAGTAATGGGGAGCCAGGCCCGACTTTCCCGCGGACG GATACGCAGACTGCACTGCACACGAAGCGGAACAGTCAGCTCTGA |
| Gene | >Pro_DTO377G3_2|g4011.t1 ATGCTTCCAGATAAGTACGTCGCTTCCACCCGCCGAATTGGCCCACGACGGCAAGCTTGTCAGTTCTAACATGGT TGCGCGCTGCGCCATTATAGATATGTCGGGCTTATTTTAGCCATTGTATCGACCATGGCCATCGGCACCAGTTTT GTGATCACCAAAAAGGTTGGTGTGCCCATCCTCCAGAAACGGACGCTTCGATCCCGAGTGCGCGAGACAAACACC GCGGCGATTCGGTCCAAAGCGATCATCATCGGAGCGGAGTCGCTAATGCGTCTGAATACAGGGCTTGATGCACGC CTCCGAACGACATGGATTTGAGGGCGAAGGTTTCTCATATTTGAAGAGTCCCGTGTGGTGGGGTGGTATAGTGAC ACGTACGGAAACCAATCGTCAGATTCGACAATTCGCCAGATGCTAACGGGTTCATAGTGGCTCTTGGCGAAGTCG CAAACTTCGCTGCCTACGCTTTTGCGCCTGCCATCCTGGTTACGCCCTTGGGTGCGCTGAGTGTTCTCATCGGGT AGGGATCTCTTCAACATCGTGCATTCGCCTCATAGCTGACATGACACAACACAGTGCGGTCTTGAGTTCGTACTT CCTCAACGAGATACTTGGTGTATTAGGAAAACTAGGCTGTGCGCTGTGCTTGCTGGGATCGGTCGTCATCGTTCT CCATGCGCCTCCAGACAAGCAGGTGGAGACCGTCGATGAGATTCTTGGATATGCGGTCCAGCCAGGTACGAAGAC TTGATCGGTGTCGCCCAAAAACTACCGCTGACTTTGCGACTAGGATTCCTTCTTTACTGTGTCGCAGTTGCGATC TTCTCGACTCTGATGATCTACCGGGTTGCGCCGGTCTATGGCAAGAAGAACCCGCTCGTCTACATCTCGATTTGC TCCACTGTTGGATCGGTCTCGGTCATGTCAGTCAAGGCCTTTGGCATTGCAGTGAAATTGACCATTGGCGGCAAC AACCAATTTGTCCACGCGTCCACCTACGTCTTTGCCATTGTAACCGGATTTTGCATTCTGACGCAGATGAACTAC TTCAACAAGGCATTGAACTCTTTCTCGACTTCGATGTGAGTGCAGACATCAAGTAATATGGAGATGCGAGGCTAA CATGATTCTTCAAACAGCGTGAACCCACTTTATTATGTCACCTTCACAACCGCGACTCTCTGTGCCTCGTTTATT CTCTTCAAGGGATTCAACACCACTGACGCCGTCAACACCATATCTTTACTCTGTGGATTCCTCATCATCTTCACC GGCGTGTACCTCCTGAACCTCTCACGACATGACCCGGATGGACACAGCATGGTGAATTCAAAACTTGACGAGGAT GGAGTGCCAACAGACGGTATGACGAGTTTCCAGACCCGTCGCTCAATGCAGTCCCGCCGAAGCGAGTCGAGTGCA TATTTCAATGGCACCAGCGACCGCGAAGGCCTCATACACGCATACGATGTGGAGAACGGGATCGGCATGAACAAC TTGACCGAAGAAAGTAATGGGGAGCCAGGCCCGACTTTCCCGCGGACGGATACGCAGACTGCACTGCACACGAAG CGGAACAGTCAGCTCTGA |