© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4005.t1 |
| Gene name | |
| Location | scaffold_07:506955..508510 |
| Strand | - |
| Gene length (bp) | 1555 |
| Transcript length (bp) | 1338 |
| Coding sequence length (bp) | 1338 |
| Protein length (aa) | 446 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00005 | ABC_tran | ABC transporter | 2.9E-33 | 227 | 376 |
| PF00664 | ABC_membrane | ABC transporter transmembrane region | 3.5E-14 | 59 | 158 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0140359 | ABC-type transporter activity | Yes |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0051234 | establishment of localization | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0005575 | cellular_component | No |
| GO:0015399 | primary active transmembrane transporter activity | No |
| GO:0140657 | ATP-dependent activity | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0043167 | ion binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0005488 | binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0051179 | localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 29 | 51 | 22 |
| 2 | 115 | 137 | 22 |
| 3 | 144 | 166 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.12 | 0.0 | 0.36 |
| 5d_25C | Five days - 25 degrees Celsius | 0.06 | 0.0 | 0.22 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.12 | 0.0 | 0.35 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.04 | 0.0 | 0.20 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.07 | 0.0 | 0.27 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.10 | 0.0 | 0.35 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4005.t1 MFDKAKFSAGSLTSSLSTDATNLAGMSGVILGSIFIVSTTLIAGVAVSIAIGWKLGLSKAAYTASGTYACEASSA IKTVASLNLESHAQREYHNILEAQRQKSVVSTLKSSALYAASQSANFLCIALAFWYGGSLIIHEGYSMVQFFIAY AAIVVGAFSAGAIFSFAPDMSKSRQGAQDIKTLLDRPVNIDARQETGELLTNMEGSLELRNIYFRYPNRPERVVI SGLSLSIQPGQYTGLVGASGCGKSTIIALLERFFDPEAGQTLVDGKDISRLNLKSYRSHLALVIQEPTLYQGTIR ENITLGTNDEDGSEEKIIKACKDANIYDFISSLPDGFSTVIGARGGMLSGGQQQQIAIARALLRDPRILLLDEAT SALDSESEKVVQDALNAAAQGRTTVAVAHRISTVQKADCIYVLHEGNIVEQGTQLESMELGGRYFELVKL* |
| Coding | >Pro_DTO377G3_2|g4005.t1 ATGTTCGACAAAGCCAAGTTCTCAGCCGGTTCACTTACATCCTCGTTGTCCACGGATGCTACCAACCTTGCCGGA ATGAGTGGTGTGATTTTAGGCTCCATCTTCATTGTCTCAACGACTTTGATTGCTGGCGTGGCTGTATCGATTGCG ATAGGTTGGAAGCTGGGACTGTCGAAGGCGGCATATACAGCTTCAGGAACTTATGCATGTGAGGCAAGTTCTGCC ATCAAGACGGTTGCATCGCTAAATCTTGAAAGCCATGCACAGCGAGAGTATCACAACATATTGGAAGCTCAGCGA CAGAAATCGGTGGTTTCAACACTCAAGTCATCAGCGCTCTATGCAGCCTCACAGTCGGCCAATTTTCTATGTATC GCGCTGGCTTTCTGGTATGGAGGAAGTCTCATAATCCATGAAGGCTATTCTATGGTGCAGTTCTTCATCGCTTAT GCGGCTATCGTCGTAGGCGCATTCAGCGCCGGGGCTATTTTCTCCTTCGCGCCTGATATGAGCAAGTCTCGCCAG GGGGCCCAGGATATTAAAACGTTATTGGACCGGCCTGTCAATATTGACGCCCGCCAGGAAACCGGCGAGCTGTTA ACGAATATGGAAGGCAGCTTGGAGTTGCGAAATATTTATTTCCGATACCCCAACAGACCGGAGAGGGTGGTTATT AGCGGCTTGAGCTTGAGTATTCAACCGGGCCAATACACAGGTCTAGTGGGAGCGAGTGGATGTGGGAAGAGCACC ATCATTGCTTTGCTGGAGCGGTTCTTTGATCCTGAAGCGGGTCAAACATTGGTTGATGGGAAAGACATTTCTAGA TTGAATCTCAAGAGCTACAGGAGCCACCTTGCTCTGGTTATTCAAGAGCCGACGCTATACCAAGGAACCATTAGG GAGAATATCACCCTGGGAACCAACGACGAGGATGGTTCCGAGGAGAAAATCATCAAAGCATGCAAGGATGCCAAT ATCTACGACTTCATCTCATCTCTACCTGACGGCTTCTCGACGGTGATAGGAGCGAGGGGCGGCATGCTCTCTGGC GGACAGCAACAACAAATAGCCATTGCGCGAGCGCTTCTTCGTGATCCACGTATCCTCCTCCTAGATGAGGCGACT TCCGCGCTCGATTCGGAGTCTGAAAAGGTCGTCCAGGATGCACTGAATGCGGCGGCTCAAGGCCGAACGACGGTC GCCGTTGCGCATCGGATAAGCACGGTACAGAAGGCCGATTGTATTTACGTGTTGCATGAAGGTAACATTGTGGAA CAGGGGACGCAATTAGAGTCAATGGAGCTAGGGGGGAGATATTTTGAGTTGGTGAAGTTGTAG |
| Transcript | >Pro_DTO377G3_2|g4005.t1 ATGTTCGACAAAGCCAAGTTCTCAGCCGGTTCACTTACATCCTCGTTGTCCACGGATGCTACCAACCTTGCCGGA ATGAGTGGTGTGATTTTAGGCTCCATCTTCATTGTCTCAACGACTTTGATTGCTGGCGTGGCTGTATCGATTGCG ATAGGTTGGAAGCTGGGACTGTCGAAGGCGGCATATACAGCTTCAGGAACTTATGCATGTGAGGCAAGTTCTGCC ATCAAGACGGTTGCATCGCTAAATCTTGAAAGCCATGCACAGCGAGAGTATCACAACATATTGGAAGCTCAGCGA CAGAAATCGGTGGTTTCAACACTCAAGTCATCAGCGCTCTATGCAGCCTCACAGTCGGCCAATTTTCTATGTATC GCGCTGGCTTTCTGGTATGGAGGAAGTCTCATAATCCATGAAGGCTATTCTATGGTGCAGTTCTTCATCGCTTAT GCGGCTATCGTCGTAGGCGCATTCAGCGCCGGGGCTATTTTCTCCTTCGCGCCTGATATGAGCAAGTCTCGCCAG GGGGCCCAGGATATTAAAACGTTATTGGACCGGCCTGTCAATATTGACGCCCGCCAGGAAACCGGCGAGCTGTTA ACGAATATGGAAGGCAGCTTGGAGTTGCGAAATATTTATTTCCGATACCCCAACAGACCGGAGAGGGTGGTTATT AGCGGCTTGAGCTTGAGTATTCAACCGGGCCAATACACAGGTCTAGTGGGAGCGAGTGGATGTGGGAAGAGCACC ATCATTGCTTTGCTGGAGCGGTTCTTTGATCCTGAAGCGGGTCAAACATTGGTTGATGGGAAAGACATTTCTAGA TTGAATCTCAAGAGCTACAGGAGCCACCTTGCTCTGGTTATTCAAGAGCCGACGCTATACCAAGGAACCATTAGG GAGAATATCACCCTGGGAACCAACGACGAGGATGGTTCCGAGGAGAAAATCATCAAAGCATGCAAGGATGCCAAT ATCTACGACTTCATCTCATCTCTACCTGACGGCTTCTCGACGGTGATAGGAGCGAGGGGCGGCATGCTCTCTGGC GGACAGCAACAACAAATAGCCATTGCGCGAGCGCTTCTTCGTGATCCACGTATCCTCCTCCTAGATGAGGCGACT TCCGCGCTCGATTCGGAGTCTGAAAAGGTCGTCCAGGATGCACTGAATGCGGCGGCTCAAGGCCGAACGACGGTC GCCGTTGCGCATCGGATAAGCACGGTACAGAAGGCCGATTGTATTTACGTGTTGCATGAAGGTAACATTGTGGAA CAGGGGACGCAATTAGAGTCAATGGAGCTAGGGGGGAGATATTTTGAGTTGGTGAAGTTGTAG |
| Gene | >Pro_DTO377G3_2|g4005.t1 ATGTTCGACAAAGCCAAGTTCTCAGCCGGTTCACTTACATCCTCGTTGTCCACGGATGCTACCAACCTTGCCGGA ATGAGTGGTGTGATTTTAGGCTCCATCTTCATTGTCTCAACGACTTTGATTGCTGGCGTGGCTGTATCGATTGCG ATAGGTTGGAAGCTGGGACTGGTTTGTACCGCAACCATTCCAGTTGTTCTTACTTGTGGTCTCGTCCGACTCAAG ATCCTCGGGGAAATGGCTCGATAGTCGAAGGCGGCATATACAGCTTCAGGAACTTATGCATGTGAGGCAAGTTCT GCCATCAAGACGGTTGCATCGCTAAATCTTGAAAGCCATGCACAGCGAGAGTATCACAACATATTGGAAGCTCAG CGACAGAAATCGGTGGTTTCAACACTCAAGTCATCAGCGCTCTATGCAGCCTCACAGTCGGCCAATTTTCTATGT ATCGCGCTGGCTTTCTGGTATGGAGGAAGTCTCATAATCCATGAAGGCTATTCTATGGTGCAGTTCTTCATCGCT TATGCGGCTATCGTCGTAGGCGCATTCAGCGCCGGGGCTATTTTCTCCTTCGCGCCTGATATGAGCAAGTCTCGC CAGGGGGCCCAGGATATTAAAACGTTATTGGACCGGCCTGTCAATATTGACGCCCGCCAGGAAACCGGCGAGCTG TTAACGAATATGGAAGGCAGCTTGGAGTTGCGAAATATTTATTTCCGATACCCCAACAGACCGGAGAGGGTGGTT ATTAGCGGCTTGAGCTTGAGTATTCAACCGGGCCAATACACAGGTCTAGTGGGAGCGAGTGGATGTGGGAAGAGC ACCATCATTGCTTTGCTGGAGCGGTTCTTTGATCCTGAAGCGGGTCAAACATTGGTTGATGGGAAAGACATTTCT AGATTGAATCTCAAGAGCTACAGGAGCCACCTTGCTCTGGTTATTCAAGAGCCGACGCTATACCAAGGAACCATT AGGGAGAATATCACCCTGGGAACCAACGACGAGGATGGTTCCGAGGAGAAAATCATCAAAGCATGCAAGGATGCC AATATCTACGACTTCATCTCATCTCTACCGTAAGCCACCCCTTTCCCTTGCACCCTCCGGCTCTGCTTTTCTATT TCTGACCTAAAGTAAATATCTACTAACGCCCAGCTCAGTGACGGCTTCTCGACGGTGATAGGAGCGAGGGGCGGC ATGCTCTCTGGCGGACAGCAACAACAAATAGCCATTGCGCGAGCGCTTCTTCGTGATCCACGTATCCTCCTCCTA GATGAGGCGACTTCCGCGCTCGATTCGGAGTCTGAAAAGGTCGTCCAGGATGCACTGAATGCGGCGGCTCAAGGC CGAACGACGGTCGCCGTTGCGCATCGGATAAGCACGGTACAGAAGGCCGATTGTATTTACGGTAAGAAACAAATA TCGATTCTGTTTACAATGCAGAGACTAACTTACGCTTATAGTGTTGCATGAAGGTAACATTGTGGAACAGGGGAC GCAATTAGAGTCAATGGAGCTAGGGGGGAGATATTTTGAGTTGGTGAAGTTGTAG |