© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g400.t1 |
| Gene name | |
| Location | scaffold_01:1019724..1021243 |
| Strand | - |
| Gene length (bp) | 1519 |
| Transcript length (bp) | 1371 |
| Coding sequence length (bp) | 1371 |
| Protein length (aa) | 457 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 9.1E-32 | 26 | 346 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 62 | 84 | 22 |
| 3 | 99 | 121 | 22 |
| 4 | 126 | 144 | 18 |
| 5 | 159 | 181 | 22 |
| 6 | 253 | 275 | 22 |
| 7 | 290 | 310 | 20 |
| 8 | 323 | 345 | 22 |
| 9 | 429 | 451 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.30 | 0.76 | 5.85 |
| 5d_25C | Five days - 25 degrees Celsius | 1.12 | 0.03 | 2.21 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.80 | 0.25 | 5.36 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.86 | 0.00 | 1.78 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.08 | 0.00 | 4.18 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.82 | 0.24 | 3.41 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.033923 | yes |
| 3d_25C | 7d_25C | 0.808752 | no |
| 3d_25C | 7d_15C | 0.416597 | no |
| 3d_25C | 7d_30C | 0.215305 | no |
| 3d_25C | 10d_25C | 0.022681 | yes |
| 5d_25C | 7d_25C | 0.096905 | no |
| 5d_25C | 7d_15C | 0.318807 | no |
| 5d_25C | 7d_30C | 0.412223 | no |
| 5d_25C | 10d_25C | 0.740967 | no |
| 7d_25C | 7d_15C | 0.673546 | no |
| 7d_25C | 7d_30C | 0.464861 | no |
| 7d_25C | 10d_25C | 0.043772 | yes |
| 7d_15C | 7d_30C | 0.860440 | no |
| 7d_15C | 10d_25C | 0.154446 | no |
| 7d_30C | 10d_25C | 0.208758 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g400.t1 MRDVHASSKPIGFRWRSSKWFILSTVAIALFAETFLYGFLVPMLPYMLRTRLHENQSRIQELTSLVLAVHGIVSV VSGPIIGHFADKTSNRKLPLLLSLVACMIGTGMVAGSTSLAVLFVGRVMQGIAGSSVWIVGLATVADTVGGDNMG KVEGLMMSFIYTGLIGGPSISGLLLELVGYWPTWSLPLLLLTVDFGARFIMIESRSVENSNCKRESTGSETHDTT SPLLAPENAQTPSTAGNFWHIILTDVRALTALFVAVSTTTVGTSFHATLPIHVQETFGWGPGKSGFLFSCLIMPT LFISPLAGWLRDRFGVRYPAMASAGFQAVILGLLGLAGTNILPWTGTQAGGGALYTGCILAIGAARPFTTNVGPV ELSAIVRAYQEDSPGIFGPEGGMSRVFSLDDVAASLGTVLGPIIGGSLKEHFGYTCMSLTWSVLYIILAILVMCF LGRNNR* |
| Coding | >Pro_DTO377G3_2|g400.t1 ATGAGGGATGTCCATGCCAGTAGTAAGCCTATAGGCTTCCGTTGGCGCTCTTCTAAATGGTTTATTCTCTCGACA GTCGCAATTGCCTTGTTCGCCGAAACATTCCTCTATGGCTTCCTTGTGCCTATGTTACCGTACATGCTTCGTACG CGACTACATGAGAATCAATCCAGGATCCAGGAACTCACGTCACTTGTTCTCGCCGTGCATGGAATCGTCTCGGTT GTTTCAGGTCCCATCATCGGCCACTTCGCTGATAAAACCTCGAATCGAAAGCTCCCACTACTACTATCGCTTGTC GCGTGTATGATCGGTACTGGCATGGTCGCTGGCTCAACCTCGCTTGCTGTTCTCTTCGTCGGTCGTGTGATGCAG GGCATTGCCGGATCCTCCGTATGGATTGTTGGCCTCGCGACCGTGGCTGATACCGTGGGTGGAGATAATATGGGC AAGGTTGAGGGCTTAATGATGTCCTTCATATATACTGGATTAATAGGCGGGCCATCCATTTCTGGTTTGCTCTTG GAACTTGTAGGCTATTGGCCGACGTGGTCATTGCCGCTCTTGCTTCTCACTGTAGATTTTGGCGCGCGTTTTATC ATGATCGAAAGCCGATCAGTGGAGAATTCTAATTGCAAGCGAGAATCGACAGGATCAGAAACGCATGACACTACC AGCCCGTTACTCGCTCCCGAGAACGCCCAAACTCCATCCACCGCAGGGAACTTCTGGCATATTATTCTCACTGAT GTTCGAGCGCTGACTGCATTGTTCGTTGCCGTGTCGACAACAACGGTTGGCACGAGCTTCCATGCTACCCTTCCC ATTCATGTGCAAGAAACATTCGGCTGGGGCCCCGGAAAAAGCGGGTTCTTGTTCTCTTGTCTCATTATGCCAACT CTGTTTATCAGTCCATTGGCTGGGTGGTTGCGTGATCGCTTCGGAGTCCGGTATCCTGCTATGGCTTCTGCGGGT TTTCAAGCGGTGATTCTTGGGCTATTGGGCCTAGCCGGTACCAACATTCTCCCTTGGACCGGTACTCAGGCCGGA GGTGGAGCGTTGTATACAGGCTGCATTCTCGCCATTGGTGCAGCGCGACCTTTTACCACGAATGTGGGCCCCGTC GAACTTTCCGCCATTGTGAGAGCTTATCAAGAGGATTCACCTGGTATCTTCGGACCTGAAGGGGGCATGTCGCGT GTTTTCTCTCTTGATGATGTTGCTGCATCGCTTGGGACAGTTCTGGGACCAATCATCGGTGGATCCCTCAAGGAA CACTTCGGTTATACTTGTATGAGCTTGACTTGGAGCGTTTTGTACATTATCCTTGCTATTCTTGTAATGTGCTTC CTAGGCAGAAACAACCGCTAG |
| Transcript | >Pro_DTO377G3_2|g400.t1 ATGAGGGATGTCCATGCCAGTAGTAAGCCTATAGGCTTCCGTTGGCGCTCTTCTAAATGGTTTATTCTCTCGACA GTCGCAATTGCCTTGTTCGCCGAAACATTCCTCTATGGCTTCCTTGTGCCTATGTTACCGTACATGCTTCGTACG CGACTACATGAGAATCAATCCAGGATCCAGGAACTCACGTCACTTGTTCTCGCCGTGCATGGAATCGTCTCGGTT GTTTCAGGTCCCATCATCGGCCACTTCGCTGATAAAACCTCGAATCGAAAGCTCCCACTACTACTATCGCTTGTC GCGTGTATGATCGGTACTGGCATGGTCGCTGGCTCAACCTCGCTTGCTGTTCTCTTCGTCGGTCGTGTGATGCAG GGCATTGCCGGATCCTCCGTATGGATTGTTGGCCTCGCGACCGTGGCTGATACCGTGGGTGGAGATAATATGGGC AAGGTTGAGGGCTTAATGATGTCCTTCATATATACTGGATTAATAGGCGGGCCATCCATTTCTGGTTTGCTCTTG GAACTTGTAGGCTATTGGCCGACGTGGTCATTGCCGCTCTTGCTTCTCACTGTAGATTTTGGCGCGCGTTTTATC ATGATCGAAAGCCGATCAGTGGAGAATTCTAATTGCAAGCGAGAATCGACAGGATCAGAAACGCATGACACTACC AGCCCGTTACTCGCTCCCGAGAACGCCCAAACTCCATCCACCGCAGGGAACTTCTGGCATATTATTCTCACTGAT GTTCGAGCGCTGACTGCATTGTTCGTTGCCGTGTCGACAACAACGGTTGGCACGAGCTTCCATGCTACCCTTCCC ATTCATGTGCAAGAAACATTCGGCTGGGGCCCCGGAAAAAGCGGGTTCTTGTTCTCTTGTCTCATTATGCCAACT CTGTTTATCAGTCCATTGGCTGGGTGGTTGCGTGATCGCTTCGGAGTCCGGTATCCTGCTATGGCTTCTGCGGGT TTTCAAGCGGTGATTCTTGGGCTATTGGGCCTAGCCGGTACCAACATTCTCCCTTGGACCGGTACTCAGGCCGGA GGTGGAGCGTTGTATACAGGCTGCATTCTCGCCATTGGTGCAGCGCGACCTTTTACCACGAATGTGGGCCCCGTC GAACTTTCCGCCATTGTGAGAGCTTATCAAGAGGATTCACCTGGTATCTTCGGACCTGAAGGGGGCATGTCGCGT GTTTTCTCTCTTGATGATGTTGCTGCATCGCTTGGGACAGTTCTGGGACCAATCATCGGTGGATCCCTCAAGGAA CACTTCGGTTATACTTGTATGAGCTTGACTTGGAGCGTTTTGTACATTATCCTTGCTATTCTTGTAATGTGCTTC CTAGGCAGAAACAACCGCTAG |
| Gene | >Pro_DTO377G3_2|g400.t1 ATGAGGGATGTCCATGCCAGTAGTAAGCCTATAGGCTTCCGTTGGCGCTCTTCTAAATGGTTTATTCTCTCGACA GTCGCAATTGCCTTGTTCGCCGGTTCGTGTACCCTGTGCCCTCTTGTTGAGCCAGTGGCTGACAGTGCATAGAAA CATTCCTCTATGGCTTCCTTGTGCCTATGTTACCGTACATGCTTCGTACGCGACTACATGAGAATCAATCCAGGA TCCAGGAACTCACGTCACTTGTTCTCGCCGTGCATGGAATCGTCTCGGTTGTTTCAGGTCCCATCATCGGCCACT TCGCTGATAAAACCTCGAATCGAAAGCTCCCACTACTACTATCGCTTGTCGCGTGTATGATCGGTACTGGCATGG TCGCTGGCTCAACCTCGCTTGCTGTTCTCTTCGTCGGTCGTGTGATGCAGGGCATTGCCGGATCCTCCGTATGGA TTGTTGGCCTCGCGACCGTGGCTGATACCGTGGGTGGAGATAATATGGGCAAGGTTGAGGGCTTAATGATGTCCT TCATATATACTGGATTAATAGGCGGGCCATCCATTTCTGGTTTGCTCTTGGAACTTGTAGGCTATTGGCCGACGT GGTCATTGCCGCTCTTGCTTCTCACTGTAGATTTTGGCGCGCGTTTTATCATGATCGAAAGCCGATCAGTGGAGA ATTCTAATTGCAAGCGAGAATCGACAGGATCAGAAACGCATGACACTACCAGCCCGTTACTCGCTCCCGAGAACG CCCAAACTCCATCCACCGCAGGGAACTTCTGGCATATTATTCTCACTGATGTTCGAGCGCTGACTGCATTGTTCG TTGCCGTGTCGACAACAACGGTTGGCACGAGCTTCCATGCTACCCTTCCCATTCATGTGCAAGAAACATTCGGCT GGGGCCCCGGAAAAAGCGGGTTCTTGTTCTCTTGTCTCATTATGCCAACTCTGTTTATCAGTCCATTGGCTGGGT GGTTGCGTGATCGCTTCGGAGTCCGGTATCCTGCTATGGCTTCTGCGGGTTTTCAAGCGGTGATTCTTGGGCTAT TGGGCCTAGCCGGTACCAACATTCTCCCTTGGACCGGTACTCAGGCCGGAGGTGGAGCGTTGTATACAGGCTGCA TTCTCGCCATTGGTGCAGCGCGACCTTTTACCACGAATGTGGGCCCCGTCGAACTTTCCGGTGAGTGCTGCCTTA TCCCGACTTTAGTATTTGCTATTGACTCTTGACAGCCATTGTGAGAGCTTATCAAGAGGATTCACCTGGTATCTT CGGACCTGAAGGGGGCATGTCGCGTGTTTTCTCTCTTGATGATGTTGCTGCATCGCTTGGGACAGTTCTGGGACC AATCATCGGTGGATCCCTCAAGGAACACTTCGGTTATACTTGTATGAGCTTGACTTGGAGTAAGTCATCCCTTCC AACACAAGTGGTGCATTTCTAATTCGACTTAGGCGTTTTGTACATTATCCTTGCTATTCTTGTAATGTGCTTCCT AGGCAGAAACAACCGCTAG |