© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3997.t1 |
| Gene name | |
| Location | scaffold_07:483719..485828 |
| Strand | + |
| Gene length (bp) | 2109 |
| Transcript length (bp) | 1905 |
| Coding sequence length (bp) | 1905 |
| Protein length (aa) | 635 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04185 | Phosphoesterase | Phosphoesterase family | 1.7E-72 | 28 | 400 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016788 | hydrolase activity, acting on ester bonds | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 24.63 | 13.50 | 35.77 |
| 5d_25C | Five days - 25 degrees Celsius | 43.04 | 25.99 | 60.10 |
| 7d_25C | Seven days - 25 degrees Celsius | 58.08 | 32.03 | 84.13 |
| 10d_25C | Ten days - 25 degrees Celsius | 30.48 | 17.03 | 43.92 |
| 7d_15C | Seven days - 15 degrees Celsius | 21.52 | 10.30 | 32.75 |
| 7d_30C | Seven days - 30 degrees Celsius | 36.37 | 20.33 | 52.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.017204 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.709594 | no |
| 3d_25C | 7d_30C | 0.132659 | no |
| 3d_25C | 10d_25C | 0.481923 | no |
| 5d_25C | 7d_25C | 0.227225 | no |
| 5d_25C | 7d_15C | 0.007091 | yes |
| 5d_25C | 7d_30C | 0.567211 | no |
| 5d_25C | 10d_25C | 0.167878 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.049382 | yes |
| 7d_25C | 10d_25C | 0.003197 | yes |
| 7d_15C | 7d_30C | 0.046354 | yes |
| 7d_15C | 10d_25C | 0.229193 | no |
| 7d_30C | 10d_25C | 0.570352 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3997.t1 MAFKLPASIAVAIALGTGLVSGGSLKDIEHVVIFMQENRSWDTYFGTMPGVRGFNDPNVQVNPDGNSVWNQLVEP AQSNKTKTLLPWYLGYQGGDWNDAIQCMSAGSNSYEENQQSLNYGLNNHWVTNNTPWSWGYLKRQDIPVQFAIAE GWTSGDMYQESQITATNPNRVTLVSGSINVPGSPQSKDQGGVYIDNNEVPGCDDNGINCYPLKWKTVYDFYEEAG VSWQLYQDTNNFDDNPLAWFDQFQTAPQNSSLAKKGMSFVGLDSFYQAAANGTLPEVSFIVGPAELSEHPPYMPK DGGWLQKKVVDAVTSSPKYNSTLLMISYDETGGFGDHVTPFHSPKDTPGEWMQDPLGMFTDIFTGPGFRVPFYMI SPWTRGNRVFTERADHNSQILFVEEWLTARGYENITTDQMVEWRRKHMSNLVNALDLHNPDYSLPSLPDAGTVDT NAKGEYTGTSNCQARYKQTRPDVPYGEQSNATDVNTLWFEEGFKEVVGYLTEGRYLTFEKNGAALTNPARGNSLV SSPASPQHNNKAQRWVIHYNNDEESQTFTVSSALDGRWVGPDGVLLPKSHSAKAAQVHFTFLGGGLGYTMQFVEK GQYIDIDKHGHLDTETRKTRPASGYQVFSVSFRN* |
| Coding | >Pro_DTO377G3_2|g3997.t1 ATGGCTTTCAAATTGCCGGCGTCTATCGCGGTCGCGATAGCCCTGGGAACGGGACTCGTGTCTGGTGGATCTCTA AAAGACATTGAACATGTCGTCATCTTCATGCAGGAGAATCGCTCGTGGGACACGTATTTCGGCACTATGCCTGGA GTCCGGGGATTCAATGATCCCAATGTCCAGGTCAACCCAGACGGAAACTCGGTCTGGAATCAATTAGTCGAGCCG GCCCAATCAAACAAGACCAAGACCTTGCTACCCTGGTATCTTGGATATCAAGGCGGCGACTGGAATGATGCAATT CAGTGCATGTCTGCGGGTAGCAACAGCTACGAGGAGAACCAGCAATCTCTCAACTATGGGTTGAACAATCACTGG GTGACAAACAACACACCCTGGAGCTGGGGGTATTTGAAGCGGCAAGATATTCCAGTTCAATTTGCTATTGCTGAA GGTTGGACATCGGGAGATATGTATCAGGAAAGCCAAATCACTGCCACAAATCCTAATCGGGTTACTTTGGTCAGC GGCTCCATCAACGTTCCTGGTAGTCCCCAGAGCAAGGACCAGGGAGGTGTTTATATTGACAATAATGAGGTACCA GGCTGTGATGACAACGGTATCAACTGCTACCCACTCAAGTGGAAGACAGTCTATGACTTTTATGAAGAGGCGGGA GTCTCTTGGCAACTCTACCAAGACACAAACAACTTTGACGACAACCCTCTGGCTTGGTTCGACCAATTTCAAACT GCCCCGCAAAACAGTTCTCTGGCTAAAAAGGGTATGTCGTTCGTGGGCCTTGATTCCTTCTACCAAGCTGCCGCC AACGGCACATTACCCGAGGTTAGTTTCATTGTCGGGCCGGCGGAGCTGTCAGAGCACCCGCCGTACATGCCAAAG GACGGAGGCTGGCTTCAGAAGAAGGTCGTCGATGCCGTCACCAGTAGCCCGAAGTACAACTCGACCCTTCTGATG ATCAGCTATGATGAGACTGGTGGCTTTGGCGACCATGTCACCCCCTTCCATTCTCCTAAGGATACCCCGGGAGAA TGGATGCAGGACCCCTTGGGTATGTTCACGGATATCTTCACAGGACCTGGTTTCCGGGTACCATTCTATATGATC TCCCCCTGGACTCGCGGAAACCGTGTGTTCACCGAGCGGGCAGATCACAACTCCCAGATTCTCTTCGTTGAGGAA TGGTTGACTGCACGGGGATACGAAAATATCACAACCGATCAGATGGTTGAATGGAGACGCAAGCACATGTCTAAT CTAGTCAACGCGCTTGATTTGCACAATCCAGACTACTCTCTCCCCAGTCTCCCTGATGCCGGGACCGTGGATACC AACGCCAAGGGCGAGTATACCGGTACATCTAACTGCCAGGCACGTTACAAGCAGACACGTCCGGATGTTCCCTAT GGAGAACAGAGCAACGCAACGGATGTCAATACCCTGTGGTTTGAAGAAGGTTTCAAAGAGGTGGTTGGCTACCTC ACCGAGGGCCGATACCTAACCTTTGAGAAGAATGGAGCAGCCCTCACGAATCCGGCCAGAGGCAACAGCCTTGTG TCCAGCCCTGCAAGCCCTCAGCACAACAATAAAGCGCAGCGTTGGGTGATCCACTACAACAATGACGAGGAAAGC CAGACATTTACCGTCTCCAGCGCACTGGATGGTCGATGGGTCGGCCCCGATGGTGTTCTGCTTCCCAAAAGCCAC AGCGCAAAGGCAGCCCAAGTGCATTTCACCTTCCTAGGTGGTGGCCTTGGCTATACCATGCAGTTTGTGGAGAAG GGGCAATACATCGATATTGACAAGCACGGACACTTGGATACTGAAACCCGCAAGACTAGACCTGCTAGTGGCTAC CAGGTCTTCAGCGTCTCTTTCCGTAATTAG |
| Transcript | >Pro_DTO377G3_2|g3997.t1 ATGGCTTTCAAATTGCCGGCGTCTATCGCGGTCGCGATAGCCCTGGGAACGGGACTCGTGTCTGGTGGATCTCTA AAAGACATTGAACATGTCGTCATCTTCATGCAGGAGAATCGCTCGTGGGACACGTATTTCGGCACTATGCCTGGA GTCCGGGGATTCAATGATCCCAATGTCCAGGTCAACCCAGACGGAAACTCGGTCTGGAATCAATTAGTCGAGCCG GCCCAATCAAACAAGACCAAGACCTTGCTACCCTGGTATCTTGGATATCAAGGCGGCGACTGGAATGATGCAATT CAGTGCATGTCTGCGGGTAGCAACAGCTACGAGGAGAACCAGCAATCTCTCAACTATGGGTTGAACAATCACTGG GTGACAAACAACACACCCTGGAGCTGGGGGTATTTGAAGCGGCAAGATATTCCAGTTCAATTTGCTATTGCTGAA GGTTGGACATCGGGAGATATGTATCAGGAAAGCCAAATCACTGCCACAAATCCTAATCGGGTTACTTTGGTCAGC GGCTCCATCAACGTTCCTGGTAGTCCCCAGAGCAAGGACCAGGGAGGTGTTTATATTGACAATAATGAGGTACCA GGCTGTGATGACAACGGTATCAACTGCTACCCACTCAAGTGGAAGACAGTCTATGACTTTTATGAAGAGGCGGGA GTCTCTTGGCAACTCTACCAAGACACAAACAACTTTGACGACAACCCTCTGGCTTGGTTCGACCAATTTCAAACT GCCCCGCAAAACAGTTCTCTGGCTAAAAAGGGTATGTCGTTCGTGGGCCTTGATTCCTTCTACCAAGCTGCCGCC AACGGCACATTACCCGAGGTTAGTTTCATTGTCGGGCCGGCGGAGCTGTCAGAGCACCCGCCGTACATGCCAAAG GACGGAGGCTGGCTTCAGAAGAAGGTCGTCGATGCCGTCACCAGTAGCCCGAAGTACAACTCGACCCTTCTGATG ATCAGCTATGATGAGACTGGTGGCTTTGGCGACCATGTCACCCCCTTCCATTCTCCTAAGGATACCCCGGGAGAA TGGATGCAGGACCCCTTGGGTATGTTCACGGATATCTTCACAGGACCTGGTTTCCGGGTACCATTCTATATGATC TCCCCCTGGACTCGCGGAAACCGTGTGTTCACCGAGCGGGCAGATCACAACTCCCAGATTCTCTTCGTTGAGGAA TGGTTGACTGCACGGGGATACGAAAATATCACAACCGATCAGATGGTTGAATGGAGACGCAAGCACATGTCTAAT CTAGTCAACGCGCTTGATTTGCACAATCCAGACTACTCTCTCCCCAGTCTCCCTGATGCCGGGACCGTGGATACC AACGCCAAGGGCGAGTATACCGGTACATCTAACTGCCAGGCACGTTACAAGCAGACACGTCCGGATGTTCCCTAT GGAGAACAGAGCAACGCAACGGATGTCAATACCCTGTGGTTTGAAGAAGGTTTCAAAGAGGTGGTTGGCTACCTC ACCGAGGGCCGATACCTAACCTTTGAGAAGAATGGAGCAGCCCTCACGAATCCGGCCAGAGGCAACAGCCTTGTG TCCAGCCCTGCAAGCCCTCAGCACAACAATAAAGCGCAGCGTTGGGTGATCCACTACAACAATGACGAGGAAAGC CAGACATTTACCGTCTCCAGCGCACTGGATGGTCGATGGGTCGGCCCCGATGGTGTTCTGCTTCCCAAAAGCCAC AGCGCAAAGGCAGCCCAAGTGCATTTCACCTTCCTAGGTGGTGGCCTTGGCTATACCATGCAGTTTGTGGAGAAG GGGCAATACATCGATATTGACAAGCACGGACACTTGGATACTGAAACCCGCAAGACTAGACCTGCTAGTGGCTAC CAGGTCTTCAGCGTCTCTTTCCGTAATTAG |
| Gene | >Pro_DTO377G3_2|g3997.t1 ATGGCTTTCAAATTGCCGGCGTCTATCGCGGTCGCGATAGCCCTGGGAACGGGACTCGTGTCTGGTGGATCTCTA AAAGACATTGAACATGTCGTCATCTTCATGCAGGAGAATCGCTCGTGGGACACGGCACGTTTTGCCTGCACTATG AAACATTGACATCGTGCTCACCAAATCGCAGTATTTCGGCACTATGCCTGGAGTCCGGGGATTCAATGATCCCAA TGTCCAGGTCAACCCAGACGGAAACTCGGTCTGGAATCAGTAAGTGCCGCCTCTAAGGGAGAAGTTAGTTCTAAC ATTCCTGGTCAGATTAGTCGAGCCGGCCCAATCAAACAAGACCAAGACCTTGCTACCCTGGTATCTTGGATATCA AGGCGGCGACTGGAATGATGCAATTCAGTGCATGTCTGCGGGTAGCAACAGCTACGAGGAGAACCAGCAATCTCT CAACTATGGGTTGAACAATCACTGGGTGACAAACAACACACCCTGGAGCTGGGGGTATTTGAAGCGGCAAGATAT TCCAGTTCAATTTGCTATTGCTGAAGGTTGGACATCGGGAGATATGTATCAGGTGCGTGGCAAGACTCGTTTTCA GAAATTGGTGACTAATTTACAAGCAGGAAAGCCAAATCACTGCCACAAATCCTAATCGGGTTACTTTGGTCAGCG GCTCCATCAACGTTCCTGGTAGTCCCCAGAGCAAGGACCAGGGAGGTGTTTATATTGACAATAATGAGGTACCAG GTATGTATCGTCGGCTCTCTCTTCTGTTAATATTTTTGATCTAACCAAATTATAGGCTGTGATGACAACGGTATC AACTGCTACCCACTCAAGTGGAAGACAGTCTATGACTTTTATGAAGAGGCGGGAGTCTCTTGGCAACTCTACCAA GACACAAACAACTTTGACGACAACCCTCTGGCTTGGTTCGACCAATTTCAAACTGCCCCGCAAAACAGTTCTCTG GCTAAAAAGGGTATGTCGTTCGTGGGCCTTGATTCCTTCTACCAAGCTGCCGCCAACGGCACATTACCCGAGGTT AGTTTCATTGTCGGGCCGGCGGAGCTGTCAGAGCACCCGCCGTACATGCCAAAGGACGGAGGCTGGCTTCAGAAG AAGGTCGTCGATGCCGTCACCAGTAGCCCGAAGTACAACTCGACCCTTCTGATGATCAGCTATGATGAGACTGGT GGCTTTGGCGACCATGTCACCCCCTTCCATTCTCCTAAGGATACCCCGGGAGAATGGATGCAGGACCCCTTGGGT ATGTTCACGGATATCTTCACAGGACCTGGTTTCCGGGTACCATTCTATATGATCTCCCCCTGGACTCGCGGAAAC CGTGTGTTCACCGAGCGGGCAGATCACAACTCCCAGATTCTCTTCGTTGAGGAATGGTTGACTGCACGGGGATAC GAAAATATCACAACCGATCAGATGGTTGAATGGAGACGCAAGCACATGTCTAATCTAGTCAACGCGCTTGATTTG CACAATCCAGACTACTCTCTCCCCAGTCTCCCTGATGCCGGGACCGTGGATACCAACGCCAAGGGCGAGTATACC GGTACATCTAACTGCCAGGCACGTTACAAGCAGACACGTCCGGATGTTCCCTATGGAGAACAGAGCAACGCAACG GATGTCAATACCCTGTGGTTTGAAGAAGGTTTCAAAGAGGTGGTTGGCTACCTCACCGAGGGCCGATACCTAACC TTTGAGAAGAATGGAGCAGCCCTCACGAATCCGGCCAGAGGCAACAGCCTTGTGTCCAGCCCTGCAAGCCCTCAG CACAACAATAAAGCGCAGCGTTGGGTGATCCACTACAACAATGACGAGGAAAGCCAGACATTTACCGTCTCCAGC GCACTGGATGGTCGATGGGTCGGCCCCGATGGTGTTCTGCTTCCCAAAAGCCACAGCGCAAAGGCAGCCCAAGTG CATTTCACCTTCCTAGGTGGTGGCCTTGGCTATACCATGCAGTTTGTGGAGAAGGGGCAATACATCGATATTGAC AAGCACGGACACTTGGATACTGAAACCCGCAAGACTAGACCTGCTAGTGGCTACCAGGTCTTCAGCGTCTCTTTC CGTAATTAG |