Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g395.t1
Gene name
Location	scaffold_01:1003802..1006070
Strand	-
Gene length (bp)	2268
Transcript length (bp)	2166
Coding sequence length (bp)	2166
Protein length (aa)	722

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF05970	PIF1	PIF1-like helicase	5.0E-51	228	432
PF05970	PIF1	PIF1-like helicase	5.3E-11	451	536
PF13604	AAA_30	AAA domain	1.1E-23	228	439
PF13245	AAA_19	AAA domain	2.9E-10	242	379

GO

GO Term	Description	Terminal node
GO:0000723	telomere maintenance	Yes
GO:0003678	DNA helicase activity	Yes
GO:0006281	DNA repair	Yes
GO:0004386	helicase activity	No
GO:0003824	catalytic activity	No
GO:0043170	macromolecule metabolic process	No
GO:0044260	cellular macromolecule metabolic process	No
GO:0016043	cellular component organization	No
GO:0071704	organic substance metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0140657	ATP-dependent activity	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0008150	biological_process	No
GO:0051276	chromosome organization	No
GO:0008094	ATP-dependent activity, acting on DNA	No
GO:0006259	DNA metabolic process	No
GO:0033554	cellular response to stress	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0140640	catalytic activity, acting on a nucleic acid	No
GO:0006974	cellular response to DNA damage stimulus	No
GO:0044238	primary metabolic process	No
GO:0009987	cellular process	No
GO:0140097	catalytic activity, acting on DNA	No
GO:0044237	cellular metabolic process	No
GO:0090304	nucleic acid metabolic process	No
GO:0051716	cellular response to stimulus	No
GO:0006996	organelle organization	No
GO:0050896	response to stimulus	No
GO:0008152	metabolic process	No
GO:0006950	response to stress	No
GO:0006807	nitrogen compound metabolic process	No
GO:0003674	molecular_function	No
GO:0046483	heterocycle metabolic process	No
GO:0071840	cellular component organization or biogenesis	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0032200	telomere organization	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 32	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	18.20	9.99	26.41
5d_25C	Five days - 25 degrees Celsius	13.44	6.89	19.99
7d_25C	Seven days - 25 degrees Celsius	15.85	8.32	23.38
10d_25C	Ten days - 25 degrees Celsius	9.24	4.24	14.23
7d_15C	Seven days - 15 degrees Celsius	12.99	6.53	19.44
7d_30C	Seven days - 30 degrees Celsius	10.76	5.19	16.33

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.275038	no
3d_25C	7d_25C	0.675388	no
3d_25C	7d_15C	0.226265	no
3d_25C	7d_30C	0.038585	yes
3d_25C	10d_25C	0.010411	yes
5d_25C	7d_25C	0.620675	no
5d_25C	7d_15C	0.939257	no
5d_25C	7d_30C	0.491897	no
5d_25C	10d_25C	0.205936	no
7d_25C	7d_15C	0.540350	no
7d_25C	7d_30C	0.174474	no
7d_25C	10d_25C	0.044995	yes
7d_15C	7d_30C	0.594299	no
7d_15C	10d_25C	0.281728	no
7d_30C	10d_25C	0.689848	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g395.t1 MFKKALQDHSGSGTKPLQQADLLHANSMAHSKPQLQSQSGGVKRKIEVAESSLGSLHNAVYFDENDFDDDLDLDE PYPLIMPSVAGTAISNKVTYPSLDTTLGIDRSVCGNENLTDVNYPDLPSISQEAEAPPSSMQLPWSSSPPSHFQP PAKKPRTLPWMKEEEEPREDKKKSFVTPKRSRPAEPWNKSESTIKAEQRELRQEYKKTQKSDINPKPENCSKVHN VFLSEEQQAVLKTVVERGKSMFFTGSAGTGKSVLMREIIAQLRYKYRKESDRIAVTASTGLAACNIGGVTLHSFA GIGLGKEPVPDLVKRIKKNPKARNRWLRTKVLVVDEVSMVDGDLFDKLEEIARRMRNNGRPFGGIQLVVTGDFFQ LPPVPDGGNREAKFAFAAASWTTCIQHTVLLTNIFRQRDPEFANMLNEMRLGKITPRTIEAFKRLSRPLDAKDQF EATELFPTRAEVDGANSARMGRLSGEIMRFNAVDSGAIQDPQQRARLLAGCIAPPMIQLKKGAQVMLIKNMEDSL VNGSIGKVVAFMSEDYFEVFRENDKNFTGDATTGSDEERAHQARKKLKPMGNQEGAASMARKWPLVSFLQPDGSE RQLLCQPETWKVELPNGEVQAQRQQVPLILAWALSIHKAQGQTLQRVKVDLGRVFEKGQAYVALSRAVSQEGLQV TRFEPRKVMVHPKVQEFYSKLTRGTEINKPKSSIALNPDDFEDEDF*
Coding	>Pro_DTO377G3_2\|g395.t1 ATGTTCAAGAAAGCCCTCCAAGACCACTCAGGCAGTGGCACGAAACCTCTTCAGCAAGCCGACTTATTGCATGCT AATTCAATGGCCCATTCGAAGCCACAATTACAATCACAATCCGGTGGTGTCAAACGAAAAATCGAAGTGGCCGAG TCCTCGCTGGGGTCCCTTCATAACGCGGTTTATTTCGATGAAAATGACTTCGATGATGATCTGGACCTCGATGAG CCCTATCCGCTGATTATGCCGAGTGTGGCTGGCACCGCCATCTCCAACAAAGTCACATATCCAAGCCTTGACACT ACATTGGGAATCGACCGGTCTGTTTGCGGCAACGAAAATCTAACAGATGTCAATTACCCCGATCTTCCATCCATA TCCCAAGAAGCAGAAGCTCCTCCCAGCAGCATGCAGTTACCTTGGTCGTCATCGCCGCCCTCTCATTTCCAACCG CCCGCGAAGAAACCTCGTACTCTTCCTTGGATGAAAGAAGAAGAGGAACCCCGCGAAGACAAGAAAAAGAGCTTT GTGACCCCCAAACGGTCGAGGCCTGCAGAACCATGGAACAAGTCCGAGAGCACCATCAAAGCGGAACAGAGAGAG TTGCGACAAGAATACAAGAAGACGCAAAAAAGCGACATAAACCCGAAACCAGAGAACTGTTCGAAGGTGCACAAT GTTTTCTTGAGTGAAGAGCAACAAGCTGTTCTTAAGACTGTTGTCGAGCGCGGAAAGAGCATGTTCTTCACTGGT TCTGCAGGAACAGGAAAATCGGTACTCATGAGGGAAATTATTGCGCAGCTGCGATATAAATATCGCAAAGAATCC GATCGAATTGCAGTCACAGCATCAACAGGTCTTGCGGCCTGCAATATCGGGGGTGTGACTCTCCACAGTTTTGCT GGGATAGGTCTAGGCAAAGAGCCAGTGCCCGACCTAGTGAAAAGGATCAAGAAAAACCCGAAAGCTCGAAATCGT TGGCTGCGTACCAAAGTCCTTGTCGTTGATGAAGTCTCCATGGTGGACGGGGATCTATTTGATAAACTCGAAGAG ATTGCCCGACGAATGCGCAACAATGGTCGTCCATTTGGAGGAATCCAGCTTGTTGTAACAGGCGACTTCTTTCAA TTACCTCCAGTCCCAGACGGAGGCAACCGGGAGGCAAAATTTGCGTTTGCAGCTGCTTCCTGGACCACTTGTATC CAACATACCGTTCTCTTAACCAACATCTTCCGTCAACGAGATCCGGAGTTTGCTAATATGCTGAATGAAATGCGA CTGGGTAAAATCACCCCTCGCACGATTGAGGCTTTTAAACGGCTCTCTCGGCCCCTTGATGCCAAAGACCAGTTC GAGGCAACGGAACTGTTCCCAACCCGCGCTGAAGTGGATGGTGCCAACTCTGCACGCATGGGAAGACTTTCTGGC GAGATTATGAGGTTCAACGCAGTGGATTCCGGAGCAATTCAGGACCCTCAGCAACGCGCGAGACTGCTGGCAGGC TGCATAGCCCCTCCTATGATCCAGCTGAAGAAGGGTGCCCAAGTGATGCTCATTAAGAATATGGAGGATTCGCTT GTCAATGGCTCTATTGGGAAAGTGGTAGCTTTCATGAGTGAAGATTACTTTGAGGTTTTCAGGGAAAACGACAAA AACTTTACCGGTGACGCGACGACTGGAAGCGATGAGGAGCGGGCTCACCAAGCTAGAAAAAAGCTGAAGCCTATG GGAAACCAAGAAGGCGCAGCTTCAATGGCCCGGAAATGGCCGCTTGTATCTTTCCTTCAGCCAGATGGGTCAGAA CGCCAGTTACTGTGTCAACCAGAGACGTGGAAGGTTGAGCTTCCCAACGGAGAAGTACAAGCCCAACGTCAACAA GTTCCGTTGATATTGGCGTGGGCCCTGTCCATACACAAGGCCCAAGGCCAGACTCTTCAACGTGTAAAAGTTGAT CTGGGTCGAGTGTTTGAAAAGGGCCAGGCTTATGTTGCACTAAGTCGAGCGGTGTCACAGGAGGGACTGCAGGTT ACTCGATTTGAGCCTCGGAAGGTGATGGTGCATCCGAAAGTGCAGGAATTCTACTCCAAACTCACCAGGGGCACA GAGATCAACAAGCCGAAGTCCTCAATTGCTTTGAACCCAGATGACTTTGAGGACGAAGACTTTTGA
Transcript	>Pro_DTO377G3_2\|g395.t1 ATGTTCAAGAAAGCCCTCCAAGACCACTCAGGCAGTGGCACGAAACCTCTTCAGCAAGCCGACTTATTGCATGCT AATTCAATGGCCCATTCGAAGCCACAATTACAATCACAATCCGGTGGTGTCAAACGAAAAATCGAAGTGGCCGAG TCCTCGCTGGGGTCCCTTCATAACGCGGTTTATTTCGATGAAAATGACTTCGATGATGATCTGGACCTCGATGAG CCCTATCCGCTGATTATGCCGAGTGTGGCTGGCACCGCCATCTCCAACAAAGTCACATATCCAAGCCTTGACACT ACATTGGGAATCGACCGGTCTGTTTGCGGCAACGAAAATCTAACAGATGTCAATTACCCCGATCTTCCATCCATA TCCCAAGAAGCAGAAGCTCCTCCCAGCAGCATGCAGTTACCTTGGTCGTCATCGCCGCCCTCTCATTTCCAACCG CCCGCGAAGAAACCTCGTACTCTTCCTTGGATGAAAGAAGAAGAGGAACCCCGCGAAGACAAGAAAAAGAGCTTT GTGACCCCCAAACGGTCGAGGCCTGCAGAACCATGGAACAAGTCCGAGAGCACCATCAAAGCGGAACAGAGAGAG TTGCGACAAGAATACAAGAAGACGCAAAAAAGCGACATAAACCCGAAACCAGAGAACTGTTCGAAGGTGCACAAT GTTTTCTTGAGTGAAGAGCAACAAGCTGTTCTTAAGACTGTTGTCGAGCGCGGAAAGAGCATGTTCTTCACTGGT TCTGCAGGAACAGGAAAATCGGTACTCATGAGGGAAATTATTGCGCAGCTGCGATATAAATATCGCAAAGAATCC GATCGAATTGCAGTCACAGCATCAACAGGTCTTGCGGCCTGCAATATCGGGGGTGTGACTCTCCACAGTTTTGCT GGGATAGGTCTAGGCAAAGAGCCAGTGCCCGACCTAGTGAAAAGGATCAAGAAAAACCCGAAAGCTCGAAATCGT TGGCTGCGTACCAAAGTCCTTGTCGTTGATGAAGTCTCCATGGTGGACGGGGATCTATTTGATAAACTCGAAGAG ATTGCCCGACGAATGCGCAACAATGGTCGTCCATTTGGAGGAATCCAGCTTGTTGTAACAGGCGACTTCTTTCAA TTACCTCCAGTCCCAGACGGAGGCAACCGGGAGGCAAAATTTGCGTTTGCAGCTGCTTCCTGGACCACTTGTATC CAACATACCGTTCTCTTAACCAACATCTTCCGTCAACGAGATCCGGAGTTTGCTAATATGCTGAATGAAATGCGA CTGGGTAAAATCACCCCTCGCACGATTGAGGCTTTTAAACGGCTCTCTCGGCCCCTTGATGCCAAAGACCAGTTC GAGGCAACGGAACTGTTCCCAACCCGCGCTGAAGTGGATGGTGCCAACTCTGCACGCATGGGAAGACTTTCTGGC GAGATTATGAGGTTCAACGCAGTGGATTCCGGAGCAATTCAGGACCCTCAGCAACGCGCGAGACTGCTGGCAGGC TGCATAGCCCCTCCTATGATCCAGCTGAAGAAGGGTGCCCAAGTGATGCTCATTAAGAATATGGAGGATTCGCTT GTCAATGGCTCTATTGGGAAAGTGGTAGCTTTCATGAGTGAAGATTACTTTGAGGTTTTCAGGGAAAACGACAAA AACTTTACCGGTGACGCGACGACTGGAAGCGATGAGGAGCGGGCTCACCAAGCTAGAAAAAAGCTGAAGCCTATG GGAAACCAAGAAGGCGCAGCTTCAATGGCCCGGAAATGGCCGCTTGTATCTTTCCTTCAGCCAGATGGGTCAGAA CGCCAGTTACTGTGTCAACCAGAGACGTGGAAGGTTGAGCTTCCCAACGGAGAAGTACAAGCCCAACGTCAACAA GTTCCGTTGATATTGGCGTGGGCCCTGTCCATACACAAGGCCCAAGGCCAGACTCTTCAACGTGTAAAAGTTGAT CTGGGTCGAGTGTTTGAAAAGGGCCAGGCTTATGTTGCACTAAGTCGAGCGGTGTCACAGGAGGGACTGCAGGTT ACTCGATTTGAGCCTCGGAAGGTGATGGTGCATCCGAAAGTGCAGGAATTCTACTCCAAACTCACCAGGGGCACA GAGATCAACAAGCCGAAGTCCTCAATTGCTTTGAACCCAGATGACTTTGAGGACGAAGACTTTTGA
Gene	>Pro_DTO377G3_2\|g395.t1 ATGTTCAAGAAAGCCCTCCAAGACCACTCAGGCAGTGGCACGAAACCTCTTCAGCAAGCCGACTTATTGCATGCT AATTCAATGGCCCATTCGAAGCCACAATTACAATCACAATCCGGTGGTGTCAAACGAAAAATCGAAGTGGCCGAG TCCTCGCTGGGGTCCCTTCATAACGCGGTTTATTTCGATGAAAATGACTTCGATGATGATCTGGACCTCGATGAG CCCTATCCGCTGATTATGCCGAGTGTGGCTGGCACCGCCATCTCCAACAAAGTCACATATCCAAGCCTTGACACT ACATTGGGAATCGACCGGTCTGTTTGCGGCAACGAAAATCTAACAGATGTCAATTACCCCGATCTTCCATCCATA TCCCAAGAAGCAGAAGCTCCTCCCAGCAGCATGCAGTTACCTTGGTCGTCATCGCCGCCCTCTCATTTCCAACCG CCCGCGAAGAAACCTCGTACTCTTCCTTGGATGAAAGAAGAAGAGGAACCCCGCGAAGACAAGAAAAAGAGCTTT GTGACCCCCAAACGGTCGAGGCCTGCAGAACCATGGAACAAGTCCGAGAGCACCATCAAAGCGGAACAGAGAGAG TTGCGACAAGAATACAAGAAGACGCAAAAAAGCGACATAAACCCGAAACCAGAGAACTGTTCGAAGGTGCACAAT GTTTTCTTGAGTGAAGAGCAACAAGCTGTTCTTAAGACTGTTGTCGAGCGCGGAAAGAGCATGTTCTTCACTGGT TCTGCAGGAACAGGAAAATCGGTACTCATGAGGGAAATTATTGCGCAGCTGCGATATAAATATCGCAAAGAATCC GATCGAATTGCAGTCACAGCATCAACAGGTCTTGCGGCCTGCAATATCGGGGGTGTGACTCTCCACAGTTTTGCT GGGATAGGTCTAGGCAAAGAGCCAGTGCCCGACCTAGTGAAAAGGGTTGGAGTCTCTCTCTATTCACCCAGGAAT TGCAGATGCTAACAACATTCAGATCAAGAAAAACCCGAAAGCTCGAAATCGTTGGCTGCGTACCAAAGTCCTTGT CGTTGATGAAGTCTCCATGGTGGACGGGGATCTATTTGATAAACTCGAAGAGATTGCCCGACGAATGCGCAACAA TGGTCGTCCATTTGGAGGAATCCAGCTTGTTGTAACAGGCGACTTCTTTCAATTACCTCCAGTCCCAGACGGAGG CAACCGGGAGGCAAAATTTGCGTTTGCAGCTGCTTCCTGGACCACTTGTATCCAACATACCGTTCTCTTAACCAA CATCTTCCGTCAACGAGATCCGGAGTTTGCTAATATGCTGAATGAAATGCGACTGGGTAAAATCACCCCTCGCAC GATTGAGGCTTTTAAACGGCTCTCTCGGCCCCTTGATGCCAAAGACCAGTTCGAGGCAACGGAACTGTAAGTTTT ACTATATACTTATACTGTGTCAAATCTGACTCTTGAATTAGGTTCCCAACCCGCGCTGAAGTGGATGGTGCCAAC TCTGCACGCATGGGAAGACTTTCTGGCGAGATTATGAGGTTCAACGCAGTGGATTCCGGAGCAATTCAGGACCCT CAGCAACGCGCGAGACTGCTGGCAGGCTGCATAGCCCCTCCTATGATCCAGCTGAAGAAGGGTGCCCAAGTGATG CTCATTAAGAATATGGAGGATTCGCTTGTCAATGGCTCTATTGGGAAAGTGGTAGCTTTCATGAGTGAAGATTAC TTTGAGGTTTTCAGGGAAAACGACAAAAACTTTACCGGTGACGCGACGACTGGAAGCGATGAGGAGCGGGCTCAC CAAGCTAGAAAAAAGCTGAAGCCTATGGGAAACCAAGAAGGCGCAGCTTCAATGGCCCGGAAATGGCCGCTTGTA TCTTTCCTTCAGCCAGATGGGTCAGAACGCCAGTTACTGTGTCAACCAGAGACGTGGAAGGTTGAGCTTCCCAAC GGAGAAGTACAAGCCCAACGTCAACAAGTTCCGTTGATATTGGCGTGGGCCCTGTCCATACACAAGGCCCAAGGC CAGACTCTTCAACGTGTAAAAGTTGATCTGGGTCGAGTGTTTGAAAAGGGCCAGGCTTATGTTGCACTAAGTCGA GCGGTGTCACAGGAGGGACTGCAGGTTACTCGATTTGAGCCTCGGAAGGTGATGGTGCATCCGAAAGTGCAGGAA TTCTACTCCAAACTCACCAGGGGCACAGAGATCAACAAGCCGAAGTCCTCAATTGCTTTGAACCCAGATGACTTT GAGGACGAAGACTTTTGA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences